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\n \"Infected\n

\n\n

Infected MCP Server

\n\n

\n The Ultimate Unified Model Context Protocol Server for AI Agents\n

\n\n

\n \"npm\n \"License\"\n \"Last\n \"Stars\"\n

\n\n---\n\n## πŸš€ What is Infected?\n\n**Infected** is a powerful, modular, and extensible **Model Context Protocol (MCP) Server** that provides AI agents with universal access to shell commands, filesystem operations, persistent memory, sequential reasoning, HTTP fetching, and SSH capabilities β€” all through a unified, standardized interface.\n\nThink of Infected as the **\"operating system for AI agents\"** β€” a single server that transforms your AI assistant into a fully capable agent that can execute commands, manage files, remember conversations, think step-by-step, fetch web content, and connect to remote systems.\n\n### Why Choose Infected?\n\n| Feature | Benefit |\n|---------|---------|\n| **πŸš€ Unified Platform** | One server, endless capabilities β€” no need to manage multiple MCP servers |\n| **πŸ”Œ Modular Architecture** | Built-in modules + custom tools + plugins = infinite extensibility |\n| **πŸ›‘οΈ Enterprise Security** | LLM-powered command evaluation, permission controls, API key auth |\n| **⚑ High Performance** | Adaptive execution, caching, streaming output, background processing |\n| **πŸ”„ Hot Reloading** | Develop tools and plugins without restarting the server |\n| **🌐 Multi-Transport** | STDIO, HTTP, and SSE β€” works locally and over the network |\n| **πŸ“š Comprehensive Docs** | Full API reference, examples, and guides |\n\n---\n\n## ✨ Key Features\n\n### πŸ–₯️ Shell Execution\n- Execute shell commands with **foreground**, **background**, **detached**, or **adaptive** modes\n- Real-time output streaming\n- Command history with search and analytics\n- Process monitoring and management\n- Terminal sessions with PTY support\n\n### πŸ“ Filesystem Operations\n- Read, write, edit, copy, move, and delete files\n- Directory listing with sizes\n- Recursive tree navigation\n- Glob pattern search\n- Path security validation (sandboxed)\n- Atomic write operations\n\n### 🧠 Persistent Memory\n- Knowledge graph storage\n- Entity-relation-observation model\n- JSONL-based persistence\n- Search and query capabilities\n\n### πŸ’­ Sequential Thinking\n- Chain-of-thought reasoning\n- Thought revision tracking\n- Branch exploration\n- Progress notifications\n\n### 🌐 HTTP Fetch\n- REST API integration\n- Web scraping capabilities\n- Custom headers and body support\n\n### πŸ” SSH Terminal\n- Persistent PTY sessions\n- Command execution on remote systems\n- File upload/download\n- Session management\n\n---\n\n## πŸ“¦ What's Inside\n\nThe Infected ecosystem is comprised of several integrated components:\n\n```\nβ”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”\nβ”‚ Infected MCP Server β”‚\nβ”œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€\nβ”‚ β”‚\nβ”‚ β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β” β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β” β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β” β”‚\nβ”‚ β”‚ Shell β”‚ β”‚ Filesystem β”‚ β”‚ Memory β”‚ β”‚\nβ”‚ β”‚ Module β”‚ β”‚ Module β”‚ β”‚ Module β”‚ β”‚\nβ”‚ β”‚ 12 tools β”‚ β”‚ 14 tools β”‚ β”‚ 9 tools β”‚ β”‚\nβ”‚ β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜ β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜ β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜ β”‚\nβ”‚ β”‚\nβ”‚ β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β” β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β” β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β” β”‚\nβ”‚ β”‚Sequential β”‚ β”‚ Fetch β”‚ β”‚ SSH β”‚ β”‚\nβ”‚ β”‚ Thinking β”‚ β”‚ Module β”‚ β”‚ Module β”‚ β”‚\nβ”‚ β”‚ Module β”‚ β”‚ β”‚ β”‚ β”‚ β”‚\nβ”‚ β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜ β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜ β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜ β”‚\nβ”‚ β”‚\nβ”‚ β”Œβ”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β” β”‚\nβ”‚ β”‚ Security & Permissions Layer β”‚ β”‚\nβ”‚ β”‚ β€’ LLM-Powered Command Evaluation β”‚ β”‚\nβ”‚ β”‚ β€’ Permission Manager (Allow/Block Lists) β”‚ β”‚\nβ”‚ β”‚ β€’ API Key Authentication β”‚ β”‚\nβ”‚ β””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜ β”‚\nβ”‚ β”‚\nβ””β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”€β”˜\n```\n\n---\n\n## πŸ“š Documentation\n\nComprehensive documentation is available to help you get started and master Infected:\n\n| Document | Description |\n|----------|-------------|\n| πŸ“– **[README.md](README.md)** | Quick start and basic usage |\n| πŸ—οΈ **[STRUCTURE.md](docs/STRUCTURE.md)** | Complete project architecture and file organization |\n| πŸ› οΈ **[GUIDE.md](docs/GUIDE.md)** | Developer guide for creating tools and plugins |\n| βš™οΈ **[CONFIGURATION_EXAMPLES.md](docs/CONFIGURATION_EXAMPLES.md)** | Advanced configuration examples |\n| 🌐 **[API_ENDPOINTS.md](docs/API_ENDPOINTS.md)** | HTTP API reference |\n| πŸ”’ **[MCP_SERVER.md](docs/MCP_SERVER.md)** | MCP server implementation details |\n| πŸ–₯️ **[SHELL.md](docs/SHELL.md)** | Shell module deep dive |\n| ⚑ **[REALTIME-OUTPUT.md](docs/REALTIME-OUTPUT.md)** | Real-time output streaming guide |\n| πŸ“ **[FILESYSTEM.md](docs/FILESYSTEM.md)** | Filesystem module reference |\n| 🧠 **[MEMORY.md](docs/MEMORY.md)** | Memory module guide |\n| πŸ’­ **[SEQUENTALTHINKING.md](docs/SEQUENTALTHINKING.md)** | Sequential thinking module docs |\n| πŸ” **[SSH.md](docs/SSH.md)** | SSH module documentation |\n\n---\n\n## 🚦 Getting Started\n\n### Installation\n\n```bash\n# Install from npm\nnpm install @_nazmiforreal/infected\n\n# Or clone from source\ngit clone https://github.com/HYPER12755/infected.git\ncd infected\nnpm install\n```\n\n### Quick Start\n\n```bash\n# Configure environment\ncp .env.example .env\ncp infected.config.json.example infected.config.json\n\n# Run in development mode (with hot reload)\nnpm run dev\n\n# Build for production\nnpm run build\n\n# Start production server\nnpm start\n```\n\nThe server runs on `http://localhost:3001` by default.\n\n---\n\n## πŸ’» Usage Examples\n\n### Execute a Shell Command\n\n```bash\ncurl -X POST http://localhost:3001/mcp \\\n -H \"Content-Type: application/json\" \\\n -d '{\n \"method\": \"tools/call\",\n \"params\": {\n \"name\": \"shell_execute\",\n \"arguments\": {\n \"command\": \"ls -la\",\n \"execution_mode\": \"foreground\"\n }\n }\n }'\n```\n\n### Read a File\n\n```bash\ncurl -X POST http://localhost:3001/mcp \\\n -H \"Content-Type: application/json\" \\\n -d '{\n \"method\": \"tools/call\",\n \"params\": {\n \"name\": \"read_text_file\",\n \"arguments\": {\n \"path\": \"./config/app.json\"\n }\n }\n }'\n```\n\n### Store Knowledge in Memory\n\n```bash\ncurl -X POST http://localhost:3001/mcp \\\n -H \"Content-Type: application/json\" \\\n -d '{\n \"method\": \"tools/call\",\n \"params\": {\n \"name\": \"create_entities\",\n \"arguments\": {\n \"entities\": [\n { \"name\": \"ProjectX\", \"entityType\": \"project\", \"observations\": [\"AI-powered\"] }\n ]\n }\n }\n }'\n```\n\n---\n\n## πŸ”§ Extending Infected\n\n### Create Custom Tools\n\nTools are the building blocks of Infected. Create your own in the `tools/` directory:\n\n```typescript\n// tools/my-tool/index.ts\nimport { z } from 'zod';\nimport { IUnifiedTool } from '../../src/core/module-system/module-types.js';\n\nconst InputSchema = z.object({\n name: z.string().describe(\"Name to greet\"),\n loud: z.boolean().optional().describe(\"Yell?\"),\n});\n\nclass MyTool implements IUnifiedTool {\n manifest = {\n id: 'tool.my_tool',\n name: 'My Tool',\n version: '1.0.0',\n type: 'tool',\n entry: 'index.ts',\n description: 'A custom greeting tool',\n inputs: InputSchema,\n };\n\n async execute(args: z.infer) {\n const greeting = `Hello, ${args.name}!`;\n return { \n content: [{ type: 'text', text: args.loud ? greeting.toUpperCase() : greeting }],\n structuredContent: { message: greeting }\n };\n }\n}\n\nexport default MyTool;\n```\n\n### Build Plugins\n\nPlugins can register multiple tools and maintain state:\n\n```typescript\n// plugins/weather/index.ts\nimport { IUnifiedPlugin } from '../../src/core/module-system/module-types.js';\n\nclass WeatherPlugin implements IUnifiedPlugin {\n manifest = {\n id: 'plugin.weather',\n name: 'Weather',\n version: '1.0.0',\n type: 'plugin',\n entry: 'index.ts',\n description: 'Weather information plugin',\n };\n\n async onLoad(context) {\n context.moduleManager.registerToolExecution(\n 'tool.get_weather',\n async (args: { city: string }) => {\n // Implementation here\n return { temperature: 72, city: args.city };\n },\n 'get_weather',\n 'Get weather for a city',\n { city: z.string() },\n this.manifest.id\n );\n }\n}\n\nexport default WeatherPlugin;\n```\n\n---\n\n## πŸ—οΈ Project Architecture\n\n```\ninfected/\nβ”œβ”€β”€ src/\nβ”‚ β”œβ”€β”€ index.ts # CLI entry point\nβ”‚ β”œβ”€β”€ server.ts # InfectedServer class\nβ”‚ β”œβ”€β”€ cli/ # Command-line tools\nβ”‚ β”‚ β”œβ”€β”€ configure.ts # Interactive setup wizard\nβ”‚ β”‚ └── plugin-cli.ts # Plugin management\nβ”‚ β”œβ”€β”€ config/ # Configuration management\nβ”‚ β”‚ β”œβ”€β”€ index.ts # ConfigManager\nβ”‚ β”‚ └── schema.ts # Zod validation schemas\nβ”‚ β”œβ”€β”€ core/ # Core functionality (27 files)\nβ”‚ β”‚ β”œβ”€β”€ module-system/ # Dynamic module loading\nβ”‚ β”‚ β”œβ”€β”€ process-manager.ts # Command execution\nβ”‚ β”‚ β”œβ”€β”€ terminal-manager.ts# PTY sessions\nβ”‚ β”‚ β”œβ”€β”€ file-manager.ts # Output file management\nβ”‚ β”‚ └── ... # And more\nβ”‚ β”œβ”€β”€ modules/ # Built-in modules (6)\nβ”‚ β”‚ β”œβ”€β”€ shell/ # Shell execution\nβ”‚ β”‚ β”œβ”€β”€ filesystem/ # File operations\nβ”‚ β”‚ β”œβ”€β”€ memory/ # Knowledge graph\nβ”‚ β”‚ β”œβ”€β”€ sequentialthinking/ # Reasoning\nβ”‚ β”‚ β”œβ”€β”€ fetch/ # HTTP requests\nβ”‚ β”‚ └── ssh/ # SSH sessions\nβ”‚ β”œβ”€β”€ security/ # Security & permissions\nβ”‚ β”œβ”€β”€ transports/ # STDIO, HTTP, SSE\nβ”‚ β”œβ”€β”€ types/ # TypeScript definitions\nβ”‚ └── utils/ # Utility functions\nβ”œβ”€β”€ tools/ # Custom tools directory\nβ”œβ”€β”€ plugins/ # Plugins directory\nβ”œβ”€β”€ docs/ # Documentation\n└── dist/ # Compiled output\n```\n\n---\n\n## πŸ›‘οΈ Security Features\n\nInfected was built with security as a first-class concern:\n\n- **πŸ”‘ API Key Authentication** β€” Protect your server with single or multiple API keys\n- **πŸ›‘οΈ Permission System** β€” Allowlist/blocklist specific tools\n- **πŸ€– LLM-Powered Evaluation** β€” Use AI to analyze commands before execution\n- **πŸ“ Command Auditing** β€” Full logging of all operations\n- **🚫 Path Sandboxing** β€” Filesystem access restricted to allowed directories\n- **⏱️ Execution Timeouts** β€” Prevent runaway processes\n\n---\n\n## πŸ“¦ Available Modules & Tools\n\n### Built-in Modules\n\n| Module | Tools | Description |\n|--------|-------|-------------|\n| **Shell** | 12 | Command execution, process management, terminals, interactive sessions |\n| **Filesystem** | 14 | File operations, directory management, search |\n| **Memory** | 9 | Knowledge graph, entities, relations |\n| **SequentialThinking** | 1 | Chain-of-thought reasoning |\n| **Fetch** | 2 | HTTP requests, web scraping |\n| **SSH** | 7 | Remote execution, file transfer |\n\n---\n\n## 🀝 Contributing\n\nWe welcome contributions! Please see our contributing guidelines:\n\n1. Fork the repository\n2. Create a feature branch\n3. Make your changes\n4. Submit a pull request\n\n---\n\n## πŸ“„ License\n\nMIT License β€” see [LICENSE](LICENSE) for details.\n\n---\n\n## πŸ™ Acknowledgments\n\n- [Model Context Protocol SDK](https://github.com/modelcontextprotocol) β€” The foundation of Infected\n- All contributors and community members\n\n---\n\n

\n Built with ❀️ for AI Agents Everywhere\n

\n\n

\n GitHub β€’\n npm β€’\n Documentation\n

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