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search \"query\"\n```\n\nThis installs two commands:\n- `kg` - Command-line interface for the knowledge graph\n- `kg-mcp-server` - MCP server for AI assistant integration\n\n## Quick Start\n\n```bash\n# Configure your knowledge graph endpoint\nkg config set api.url https://kg.example.com/api\n\n# Login\nkg login\n\n# Check health\nkg health\n\n# Ingest a document\nkg ingest document.pdf\n\n# Search concepts\nkg search \"machine learning\"\n```\n\n## CLI Commands\n\n| Command | Description |\n|---------|-------------|\n| `kg health` | Check API server health |\n| `kg login` | Authenticate with username and password |\n| `kg logout` | End authentication session |\n| `kg oauth` | Manage OAuth clients |\n| `kg config` | Manage CLI configuration |\n| `kg mcp-config` | Manage MCP file access allowlist |\n| `kg ingest <file>` | Ingest documents into the knowledge graph |\n| `kg search <query>` | Search and explore the knowledge graph |\n| `kg concept` | Create, list, show, and delete concepts |\n| `kg edge` | Manage edges (relationships) between concepts |\n| `kg batch` | Batch graph operations (atomic import) |\n| `kg document` | Search and retrieve documents |\n| `kg source` | Manage source documents |\n| `kg ontology` | Manage ontologies (knowledge domains) |\n| `kg vocabulary` | Vocabulary management and consolidation |\n| `kg database` | Database operations and information |\n| `kg jobs` | Manage ingestion jobs |\n| `kg admin` | System administration (backup, RBAC, AI config) |\n| `kg polarity` | Polarity axis analysis between concept poles |\n| `kg projection` | Manage embedding projections for visualization |\n| `kg artifact` | Manage stored computation results |\n| `kg group` | Manage groups and membership |\n| `kg query-def` | Manage saved query definitions |\n| `kg program` | Manage graph programs (GraphProgram DSL) |\n| `kg storage` | Storage diagnostics and inspection |\n| `kg ls` | List resources (Unix-style shortcut) |\n| `kg cat` | Display resource details (Unix-style shortcut) |\n| `kg stat` | Show status or statistics (Unix-style shortcut) |\n| `kg rm` | Remove or delete resources (Unix-style shortcut) |\n\nRun `kg --help` or `kg <command> --help` for detailed usage.\n\n## MCP Server\n\nThe MCP server allows AI assistants (like Claude) to interact with your knowledge graph.\n\n### Claude Desktop Configuration\n\nAdd to `~/Library/Application Support/Claude/claude_desktop_config.json` (macOS) or `~/.config/Claude/claude_desktop_config.json` (Linux):\n\n```json\n{\n  \"mcpServers\": {\n    \"knowledge-graph\": {\n      \"command\": \"npx\",\n      \"args\": [\"-p\", \"@aaronsb/kg-cli\", \"kg-mcp-server\"],\n      \"env\": {\n        \"KG_API_URL\": \"https://kg.example.com/api\",\n        \"KG_API_TOKEN\": \"your-token-here\"\n      }\n    }\n  }\n}\n```\n\nOr if installed globally/user-local (simpler):\n```json\n{\n  \"mcpServers\": {\n    \"knowledge-graph\": {\n      \"command\": \"kg-mcp-server\",\n      \"env\": {\n        \"KG_API_URL\": \"https://kg.example.com/api\",\n        \"KG_API_TOKEN\": \"your-token-here\"\n      }\n    }\n  }\n}\n```\n\n### Available MCP Tools\n\n| Tool | Description |\n|------|-------------|\n| `search` | Search concepts, source passages, or documents by semantic similarity |\n| `concept` | Get concept details, find related concepts, or discover connection paths |\n| `ontology` | Manage ontologies: list, info, files, scores, annealing |\n| `job` | Manage ingestion jobs: status, list, approve, cancel, cleanup |\n| `ingest` | Ingest content: submit text, inspect/ingest files, ingest directories |\n| `source` | Retrieve original source content (text or image) for a source node |\n| `epistemic_status` | Vocabulary epistemic status classification for relationship types |\n| `analyze_polarity_axis` | Analyze semantic dimensions between two concept poles |\n| `artifact` | Manage saved artifacts (persisted search results, projections, analyses) |\n| `document` | Work with documents: list, show content, get extracted concepts |\n| `graph` | Create, edit, delete, and list concepts and edges directly |\n| `program` | Compose and execute GraphProgram queries (set-algebraic DSL) |\n\n## Configuration\n\nConfiguration is stored in `~/.config/kg/config.json`:\n\n```json\n{\n  \"api\": {\n    \"url\": \"https://kg.example.com/api\"\n  },\n  \"auth\": {\n    \"token\": \"...\"\n  }\n}\n```\n\nOr use environment variables:\n- `KG_API_URL` - API endpoint\n- `KG_API_TOKEN` - Authentication token\n\n## Requirements\n\n- Node.js 18+\n- A running Knowledge Graph System instance\n\n## Shell Alias (optional)\n\nIf using npx, add an alias to your shell profile:\n```bash\nalias kg='npx @aaronsb/kg-cli'\n```\n\n## Links\n\n- [Knowledge Graph System](https://github.com/aaronsb/knowledge-graph-system)\n- [Documentation](https://github.com/aaronsb/knowledge-graph-system/tree/main/docs)\n- [Issues](https://github.com/aaronsb/knowledge-graph-system/issues)\n\n## License\n\nMIT\n","readmeFilename":"README.md"}