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the a live demo and documentation at: https://abi-software.github.io/flatmapvuer/","maintainers":[{"name":"hsorby","email":"h.sorby@auckland.ac.nz"},{"name":"alan-wu","email":"alan.wu@auckland.ac.nz"},{"name":"agarny","email":"agarny@hellix.com"},{"name":"dbrnz","email":"d.brooks@auckland.ac.nz"},{"name":"akhuoa","email":"aung.kyaw.hein@auckland.ac.nz"}],"readme":"# FlatmapVuer\n\nView the a live demo and documentation at: https://abi-software.github.io/flatmapvuer/\n\nThis project aims to wrap the flatmap viewer project into a vue component.\nThere are currently two components available. FlatmapVuer and MultiFlatmapVuer. FlatmapVuer is used for displaying a single flatmap whereas MultiFlatmapVuer takes in an array of flatmaps and provide a chooser for selecting the flatmap on display.\n\nThis project is now built with Vue3 frameworks, Vue 2 version of Flatmapvuer is no longer maintained.\n\n## Flatmapvuer on NPM\n\nFlatmapvuer is available on npm and can be installed into your project with the following command:\n```bash\nnpm i @abi-software/flatmapvuer\n```\n\n## How to use\nInstall the package \"npm i @abi-software/flatmapvuer\" to your vue app.\nInclude the package in your script.\n```javascript\nimport {FlatmapVuer, MultiFlatmapVuer} from '@abi-software/flatmapvuer';\nimport '@abi-software/flatmapvuer/dist/style.css';\n```\nLocal registration in vue component:\n```javascript\nexport default {\n  ...\n  components: {\n    FlatmapVuer,\n    MultiFlatmapVuer\n  }\n  ...\n}\n```\n\nThe line above registers both the FlatmapVuer and MultiFlatmapVuer component into the global scope.\nYou can now use the FlatmapVuer in your vue template as followed:\n```html\n<FlatmapVuer entry=\"NCBITaxon:9606\" uuid=\"uuid-to-set\" v-on:resource-selected=\"FlatmapSelected\"  v-on:ready=\"FlatmapReady\"/>\n```\n\n**entry** is the variable/string with the NCBI Taxonomy term. Some of the available taxon including: NCBITaxon:9606 (Human), NCBITaxon:9685 (Cat), NCBITaxon:9823 (Pig), NCBITaxon:10090 (Mouse) and NCBITaxon:10114 (Rat). This will always get the latest version of a map with the matching taxon.\n\n**uuid** is the unique id of a specific map. This will be used instead of **entry** when specified.\n\n**ready** is the custom event when the map has been loaded successfully.\n**resource-selected** is the custom event triggered when a part of the flatmap is selected, the returned argument **resource** provides information of the selected resource. Information of location is provided with supported maps in the **feature -> location** property.\n\nMarkers must be added to make a label selectable and it can be done through the **addMarker** method on the mapImp member of the FlatmapVuer component.\n\nPlease see the following sample codes for details.\n\n```javascript\n  methods: {\n    FlatmapSelected: function(resource) {\n     console.log(resource);\n    },\n    FlatmapReady: function(flatmapComponent) {\n      labels = flatmapComponent.getLabels(); //return list of labels\n      //The following line adds a marker on the map. UBERON:0000948\n      //is the UBERON id representing the heart.\n      flatmapComponent.mapImp.addMarker(\"UBERON:0000948\", \"simulation\");\n    }\n  }\n```\n\nYou can also use MultiFlatmapVuer to provide a selection of flatmaps.\n```html\n<MultiFlatmapVuer :availableSpecies=\"availableSpecies\"\n  @resource-selected=\"FlatmapSelected\"\n  @ready=\"FlatmapReady\" :initial=\"initial\"/>\n```\n**availableSpecies** is the object containing information of available species for the users. See below for an example:\n```javascript\n  availableSpecies : {\n    \"Human\":{taxo: \"NCBITaxon:9606\", iconClass:\"icon-mapicon_human\"},\n    \"Rat\":{taxo: \"NCBITaxon:10114\", iconClass:\"icon-mapicon_rat\"},\n    \"Mouse\":{taxo: \"NCBITaxon:10090\", iconClass:\"icon-mapicon_mouse\"},\n    \"Pig\":{taxo: \"NCBITaxon:9823\", iconClass:\"icon-mapicon_pig\"},\n    \"Cat\":{taxo: \"NCBITaxon:9685\", iconClass:\"icon-mapicon_cat\"},\n  }\n```\nThe keys of the codes above provide the labels on the chooser, **taxo** should be one of the available taxon id from the list and **iconClass** specifies the user provided icons to use.\n\n**initial** specifies the start up species when the component is first mounted, it should be one of the keys on the provided available species.\n\n\n## Project setup from Github\n\nThe source code is available from Github, it can be found here: https://github.com/ABI-Software/flatmapvuer .\n\n### Clone the respositroy\n```bash\ngit clone https://github.com/ABI-Software/flatmapvuer.git\n```\n\n### Setup\n```bash\nnpm install\n```\n\n### Compiles and minifies for production\n```bash\nnpm run build-bundle\n```\n\n### Run the sample application\n```bash\nnpm run serve\n```\n\n\n## Documentation\n\nThe documentation is developed with `vitepress` and `vuese`. Documentation pages are in the `docs` folder.\n\n### To run in local development mode\n```bash\nnpm run docs:watch\n```\nThis will start the documentation server with `vitepress` on port `:5173` and watch the `FlatmapVuer` and `MultiFlatmapVuer` components changes.\n","readmeFilename":"README.md"}