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project aims to provide an application to visually navigate anatomical entities to  discover functional and physiological datasets from organ-specific neural circuitry.","maintainers":[{"name":"hsorby","email":"h.sorby@auckland.ac.nz"},{"name":"alan-wu","email":"alan.wu@auckland.ac.nz"},{"name":"agarny","email":"agarny@hellix.com"},{"name":"dbrnz","email":"d.brooks@auckland.ac.nz"},{"name":"akhuoa","email":"aung.kyaw.hein@auckland.ac.nz"}],"readme":"# mapintegratedvuer\n\nThis project aims to provide an application to visually navigate anatomical entities to  discover functional and physiological datasets\nfrom organ-specific neural circuitry.\n\n## Components in mapintegratedvuer\n\nMapintegratedvuer includes multiple components for visualising data, the list of viewers can be found below:\n\n### [Flatmapvuer](https://github.com/ABI-Software/flatmapvuer)\n\n### [Scaffoldvuer](https://github.com/ABI-Software/scaffoldvuer)\n\n### [Simulationvuer](https://github.com/ABI-Software/simulationvuer)\n\n### [Plotvuer](https://github.com/ABI-Software/plotvuer)\n\n### [Sidebar](https://github.com/ABI-Software/map-sidebar.git)\n\n\n## mapintegratedvuer on NPM\n\nmapintegratedvuer is available on npm and can be installed into your project with the following command:\n```bash\nnpm i @abi-software/mapintegratedvuer\n```\n\n## Project setup\n```\nnpm install\n```\n\n### Compiles and minifies for production\n```\nnpm run build-bundle\n```\n\n## How to use\nInstall the package in your vue app project with the following command \"npm i @abi-software/mapintegratedvuer\".\nImport the package in your script as followed:\n```javascript\nimport '@abi-software/mapintegratedvuer';\nimport '@abi-software/mapintegratedvuer/dist/mapintegratedvuer.css';\n```\n\nThe codes above register the MapContent component in the global scope.\nYou can now use the MapContent in your vue template as followed:\n```html\n<MapContent />\n```\n\n## Project setup from Github\n\nThe source code is available from Github, it can be found here: https://github.com/ABI-Software/mapintegratedvuer .\n\n### Clone the respositroy\n```bash\ngit clone https://github.com/ABI-Software/mapintegratedvuer\n```\n\n### Setup\n```bash\nnpm install\n```\n\n### Create an instance\n```bash\nnpm run serve\n```\n\n### Compiles and minifies for production\n```bash\nnpm run build-bundle\n```\n\n## Example\nThe following pagedemonstrates the mapintegratedapp in action: https://mapcore-demo.org/current/sparc-app/maps\n\n\n## Testing mapintegratedvuer dependencies in [sparc-app](https://github.com/nih-sparc/sparc-app/)\nWe will cover three options for updating nested dependencies.\n\n### 1. Copy build files from `npm run build-bundle`\nThis works by directly changing files in `node-modules/`, where node will look to resolve dependencies.\n\n```\ncd <your-dependency>\nnpm run build-bundle\ncp /dist <mapintegratedvuer-path>/node_modules/@<your-npmhandle>/<your-dependency>/dist\ncd <mapintegratedvuer-path>\nnpm run build-bundle\ncp /dist <sparc-app-path>/node_modules/@abi-software/mapintegratedvuer/dist\nyarn dev\n```\n*Note: this assumes assets in the static folders shipped with the npm package will remain unchanged*\n### 2. Use `yarn link`\nThis is a variant of option 1, where we use `yarn link` to create a symbolic link from mapintegratedvuer->spar-app\nIt reduces the number of copies to 1, but still requires 3 builds\n```\ncd <your-dependency>\nnpm run build-bundle\ncp /dist <mapintegratedvuer-path>/node_modules/@<your-npmhandle>/<your-dependency>/dist\ncd <mapintegratedvuer-path>\nnpm run build-bundle\nyarn link\ncd sparc-app\nyarn link @abi-software/mapintegratedvuer\nyarn dev\n```\n(npm link does not work without disabling es-lint, which we won't go into)\n\n### 3. Publish own version of mapintegratedvuer\nThis method is the most time consuming and has the downside of populating the npm package's version history with builds.\nSince it mimics the way `sparc-app` will use it, it's gauranteed to work.\n\n```\ncd <your-dependency>\nnpm run build-bundle\nnpm publish --tag alpha\ncd mapintegratedvuer\nnpm install @<your-npmhandle>/<your-dependency>@alpha\n```\n\nEdit mapintegratedvuer/package.json:\nChange `@abi-software/mapintegratedvuer` to `@<your-npm-handle>/mapintegratedvuer`\n\n```\ncd mapintegratedvuer\nnpm run build-bundle\nnpm publish --tag alpha\n```\n\nEdit sparc-app/pages/maps/index.vue\nChange `@abi-software/mapintegratedvuer` to `@<your-npm-handle>/mapintegratedvuer`\n\n```\ncd sparc-app\nyarn add @<your-npm-handle>/mapintegratedvuer@alpha\nyarn dev\n```\n\n## API Documentation\n\nThe API documentation is developed with `vitepress` and `vuese`. The API documentation pages are in the `docs` folder.\n\n### To run in local development mode\n```bash\nnpm run docs:watch\n```\nThis will start the documentation server with `vitepress` on port `:5173` and watch the `FlatmapVuer` and `MultiFlatmapVuer` components changes.\n\n\n## The HelpModeDialog\n\nThe `HelpModeDialog` is used to show help tooltips individually and one by one. This is available on Flatmap, MultiFlatmap, and Scaffold views.\nTo use `HelpModeDialog`, set `useHelpModeDialog` to `true`. The default value is `false`.\n\n```HTML\n<MapContent\n  ...\n  :useHelpModeDialog=\"true\"\n/>\n```\n","readmeFilename":"README.md"}