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OR Apache-2.0","homepage":"https://github.com/bio-rs/bio-rs#readme","keywords":["bioinformatics","protein","tokenizer","wasm","rust"],"repository":{"type":"git","url":"git+https://github.com/bio-rs/bio-rs.git","directory":"crates/biors-wasm"},"description":"WebAssembly bindings for bio-rs biological sequence processing","maintainers":[{"name":"chanmin713","email":"chanmin713@snu.ac.kr"}],"readme":"# biors-wasm\n\nWebAssembly/JavaScript bindings for [bio-rs](https://github.com/bio-rs/bio-rs) core biological sequence processing.\n\n## Usage\n\n```javascript\nimport {\n  browserExecutionPolicy,\n  inspectBrowserFile,\n  validateBrowserFile,\n  parseFasta,\n  validateFasta,\n  tokenize,\n  tokenizeBrowserFile,\n  buildModelInputWithPolicy,\n  runWorkflow,\n} from \"@bio-rs/biors-wasm\";\n\nconst fastaText = \">seq1\\nACDE\\n>seq2\\nFGHI\\n\";\nconst bytes = new TextEncoder().encode(fastaText);\n\nconst parsed = parseFasta(bytes);\nconst validated = validateFasta(bytes, \"protein\");\nconst tokenized = tokenize(parsed, \"protein-20\");\nconst dnaTokens = tokenize(parseFasta(new TextEncoder().encode(\">dna\\nACGT\\n\")), \"dna-iupac\");\nconst modelInput = buildModelInputWithPolicy(tokenized.records, 8, 0, \"fixed_length\");\nconst workflow = runWorkflow({\n  fastaBytes: bytes,\n  maxLength: 8,\n  padding: \"fixed_length\",\n  padTokenId: 0,\n});\nconst dnaWorkflow = runWorkflow({\n  fastaBytes: new TextEncoder().encode(\">dna\\nACGT\\n\"),\n  kind: \"dna\",\n  profile: \"dna-iupac\",\n  maxLength: 8,\n});\n\nconst policy = browserExecutionPolicy();\nconst fileInput = {\n  name: \"protein.fasta\",\n  format: \"fasta\",\n  bytes,\n  kind: \"protein\",\n  profile: \"protein-20\",\n};\nconst inspected = inspectBrowserFile(fileInput);\nconst browserValidation = validateBrowserFile(fileInput);\nconst browserTokens = tokenizeBrowserFile(fileInput);\n```\n\nThe browser helpers are local-first by contract: they accept caller-owned\n`Uint8Array` input, enforce the documented size policy, do not call `fetch`, do\nnot upload input data, and do not persist records.\n\n## Development\n\n```bash\n# Check compilation\ncargo check -p biors-wasm --target wasm32-unknown-unknown\n\n# Build for bundlers\nwasm-pack build crates/biors-wasm --target bundler\n\n# Enable browser panic stack traces for local debugging\nwasm-pack build crates/biors-wasm --target bundler --features console_error_panic_hook\n\n# Run browser tests\nwasm-pack test --headless --chrome crates/biors-wasm\n```\n\n## License\n\nMIT OR Apache-2.0\n","readmeFilename":"README.md"}