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src=\"https://img.shields.io/badge/documentation-yes-brightgreen.svg\" />\n  </a>\n  <a href=\"https://github.com/biothings/smartapi-kg.js/graphs/commit-activity\" target=\"_blank\">\n    <img alt=\"Maintenance\" src=\"https://img.shields.io/badge/Maintained%3F-yes-green.svg\" />\n  </a>\n</p>\n\n[![Test](https://github.com/biothings/smartapi-kg.js/actions/workflows/test.yml/badge.svg)](https://github.com/biothings/smartapi-kg.js/actions/workflows/test.yml)\n> Generate a meta knowledge graph of how biomedical concepts are connected based on SmartAPI Specifications with built-in filtering capabilities\n\n### 🏠 [Homepage](https://github.com/biothings/smartapi-kg.js#readme)\n\n## Install\n\n```sh\nnpm i @biothings-explorer/smartapi-kg\n```\n\n## Usage\n\n- Import and Initialize\n\n    ```javascript\n    const kg = require(\"@biothings-explorer/smartapi-kg\")\n    //initiate a new knowledge graph class\n    let meta_kg = new kg.default()\n    ```\n\n- Load the Meta Knowledge Graph (meta-kg)\n\n  - Option 1: Load Meta-KG from SmartAPI specs with translator tag specified\n\n    ```javascript\n    //async load knowledge graph from SmartAPI\n    await meta_kg.constructMetaKG()\n    ```\n\n  - Option 2: Load Meta-KG from SmartAPI specs with translator tag as well as ReasonerStdAPI with /predicates endpoint\n\n    ```javascript\n    await meta_kg.constructMetaKG(includeReasoner=true);\n    ```\n  \n  - Option 3: Load Meta-KG from SmartAPI specs with tags equal to biothings\n\n    ```javascript\n    await meta_kg.constructMetaKG(includeReasoner = false, {tag: \"biothings\"});\n    ```\n\n  - Option 4: Load Meta-KG from SmartAPI specs with team name equal to Text Mining Provider\n\n    ```javascript\n    await meta_kg.constructMetaKG(includeReasoner = false, {teamName: \"Text Mining Provider\"});\n    ```\n\n  - Option 5: Load Meta-KG from SmartAPI specs with component equal to KP\n\n    ```javascript\n    await meta_kg.constructMetaKG(includeReasoner = false, {component: \"KP\"});\n    ```\n\n  - Option 6: Load Meta-KG for a specific SmartAPI spec with SmartAPI ID\n\n    ```javascript\n    await meta_kg.constructMetaKG(includeReasoner = false, {smartAPIID: \"5076f09382b38d56a77e376416b634ca\"});\n    ```\n\n  - Option 7: Load Meta-KG from a local copy of SmartAPI specs included in the package\n\n    ```javascript\n    //Alternatively, you can also sync load SmartAPI specs from a local copy within the package\n    meta_kg.constructMetaKGSync();\n    ```\n\n  - Option 8: Load Meta-KG from file path you specify\n\n    ```javascript\n      const path = require(\"path\");\n      // provide file path storing your SmartAPI file\n      const file_path = path.resolve(__dirname, '../data/smartapi_multiomics_kp_query.json');\n      let meta_kg = new MetaKG(file_path);\n      meta_kg.constructMetaKGSync();\n    ```\n  \n  - Option 9: Load Meta-KG with an api list\n    ```javascript\n    meta_kg.constructMetaKGSync(includeReasoner=true, {apiList: [\n      {\n        id: '09c8782d9f4027712e65b95424adba79',\n        name: 'MyVariant.info API'\n      },\n      {\n        id: '59dce17363dce279d389100834e43648',\n        name: 'MyGene.info API'\n      }\n    ]});\n    ```\n\n\n\n- Filter the Meta-KG for specific associations based on input, output, predicate, or api combinations.\n\n    ```javascript\n    //filter based on predicate\n    meta_kg.filter({predicate: 'treats'})\n    //filter based on predicate and input_id\n    meta_kg.filter({predicate: 'treats', input_id: 'CHEMBL.COMPOUND'})\n    //filter based on predicate and input_type\n    meta_kg.filter({predicate: ['treats', 'physically_interacts_with'], input_type: 'SmallMolecule'})\n    //filter based on input_type, output_type and api\n    meta_kg.filter({ api: \"Automat PHAROS API\", input_type: \"SmallMolecule\", output_type: \"Gene\" });\n\n    ```\n\n[Runkit Notebook Demo](https://runkit.com/kevinxin90/smartapi-kg-demo)\n\n## Run tests\n\n```sh\nnpm run test\n```\n\n## Author\n\n👤 **Jiwen Xin**\n\n* Website: http://github.com/kevinxin90\n* Github: [@kevinxin90](https://github.com/kevinxin90)\n\n## 🤝 Contributing\n\nContributions, issues and feature requests are welcome!<br />Feel free to check [issues page](https://github.com/biothings/smartapi-kg.js/issues).\n\n## Show your support\n\nGive a ⭐️ if this project helped you!\n\n## 📝 License\n\nCopyright © 2020 [Jiwen Xin](https://github.com/kevinxin90).<br />\nThis project is [ISC](https://github.com/biothings/smartapi-kg.js/blob/main/LICENSE) licensed.\n\n***\n_This README was generated with ❤️ by [readme-md-generator](https://github.com/kefranabg/readme-md-generator)_","readmeFilename":"README.md"}