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CLI tool for ai-trackdown functionality with comprehensive PR management system","maintainers":[{"name":"bobmatnyc","email":"bob@matsuoka.com"}],"readme":"# AI Trackdown CLI v1.4.0\n\n[![npm version](https://badge.fury.io/js/@bobmatnyc%2Fai-trackdown-tools.svg)](https://badge.fury.io/js/@bobmatnyc%2Fai-trackdown-tools)\n[![npm downloads](https://img.shields.io/npm/dm/@bobmatnyc/ai-trackdown-tools.svg)](https://www.npmjs.com/package/@bobmatnyc/ai-trackdown-tools)\n[![License: ISC](https://img.shields.io/badge/License-ISC-blue.svg)](https://opensource.org/licenses/ISC)\n[![Node Version](https://img.shields.io/node/v/@bobmatnyc/ai-trackdown-tools.svg)](https://www.npmjs.com/package/@bobmatnyc/ai-trackdown-tools)\n[![AI-Trackdown Compatibility](https://img.shields.io/badge/ai--trackdown-%5E1.0.0-brightgreen.svg)](https://github.com/bobmatnyc/ai-trackdown)\n\nA professional CLI tool for AI-first project management with hierarchical Epic→Issue→Task workflows, comprehensive Pull Request management, token tracking, and YAML frontmatter support.\n\n**Compatible with ai-trackdown schema v1.0.0 and above**\n\n## What's New in v1.4.0\n\n🚀 **Audit Trail Support**: New `--notes` and `--reason` options for issue/task updates  \n🚀 **State Change Tracking**: Document reasons for status changes with `--reason`  \n🚀 **General Notes**: Add timestamped notes to any issue/task with `--notes`  \n🚀 **Completion Notes**: Track completion details with `--completion-notes`  \n\n### Previous v1.1.7 Features\n🚀 **CLI Index Corruption Fix**: Resolved \"No items found\" errors in status and backlog commands  \n🚀 **Index Auto-Repair System**: Automatic detection and repair of corrupted index files  \n🚀 **New index-health Command**: Diagnostic command for CLI index validation and repair  \n🚀 **Enhanced CLI Reliability**: Improved index validation and error recovery mechanisms  \n🚀 **Flexible Epic Assignment**: Epic IDs are now optional - create standalone issues or add epic assignment later  \n🚀 **Anywhere-Submit Functionality**: Execute commands from anywhere with `--project-dir` for seamless multi-project workflows  \n\n## Features\n\n✅ **Anywhere-Submit Capability**: Work with any project from anywhere using `--project-dir`  \n✅ **AI-First Design**: Built for AI collaboration with context generation and token tracking  \n✅ **Flexible Hierarchical Structure**: Optional Epic → Issue → Task relationships with YAML frontmatter  \n✅ **Complete PR Management**: 12 comprehensive PR commands with GitHub-independent workflows  \n✅ **Agent-Optimized**: Batch operations and intelligent automation for AI-driven development  \n✅ **Token Management**: Comprehensive token tracking and budget alerts  \n✅ **AI Context Generation**: Automatic llms.txt generation for AI workflows  \n✅ **Enhanced Template System**: Bundled defaults with project-specific overrides  \n✅ **Performance Optimized**: <10ms response times with intelligent indexing  \n✅ **Index Health Monitoring**: Built-in diagnostic and repair tools for CLI reliability  \n✅ **Git-Native**: Local file-based storage with git integration  \n\n## Installation\n\n```bash\nnpm install -g @bobmatnyc/ai-trackdown-tools\n```\n\n## Quick Start\n\n```bash\n# Initialize a new ai-trackdown project\naitrackdown init --framework ai-trackdown\n\n# Create an epic (optional)\naitrackdown epic create \"User Authentication System\" --priority high\n\n# Create an issue under the epic\naitrackdown issue create \"Login Flow Implementation\" --epic EP-0001\n\n# Or create a standalone issue (no epic required)\naitrackdown issue create \"Bug fix for login validation\" --priority medium\n\n# Create a task under the issue\naitrackdown task create \"JWT Token Validation\" --issue ISS-0001\n\n# Check project status\naitrackdown status\n\n# Generate AI context file\naitrackdown ai generate-llms-txt\n\n# Check CLI index health (v1.1.7+)\naitrackdown index-health\n```\n\n## Anywhere-Submit Functionality (v3.0.0)\n\nWork with any project from anywhere using the `--project-dir` option:\n\n```bash\n# Execute commands from anywhere by specifying the project directory\naitrackdown --project-dir /path/to/project status\naitrackdown --project-dir /path/to/project epic create \"New Epic\"\naitrackdown --project-dir /path/to/project issue list --status active\n\n# Useful for CI/CD pipelines and automated workflows\naitrackdown --project-dir $PROJECT_PATH pr create \"Automated PR\"\n\n# Multi-project management from a single location\naitrackdown --project-dir ~/projects/app1 status\naitrackdown --project-dir ~/projects/app2 status\n```\n\n## AI-First Workflow\n\nThe CLI supports comprehensive AI development workflows with enhanced performance:\n\n```bash\n# Epic Management (< 50ms response time)\naitrackdown epic list\naitrackdown epic show EP-0001 --show-issues --show-tasks\naitrackdown epic complete EP-0001 --actual-tokens 1500\n\n# Issue Management with flexible epic assignment\naitrackdown issue create \"Feature implementation\" --epic EP-0001  # Epic-assigned\naitrackdown issue create \"Bug fix\" --priority urgent             # Standalone issue\naitrackdown --project-dir /path/to/project issue assign ISS-0001 developer\naitrackdown issue complete ISS-0001 --auto-complete-tasks\n\n# Task Management with Token Tracking\naitrackdown task complete TSK-0001 --tokens 250\naitrackdown task list\n\n# AI Features with Enhanced Performance\naitrackdown ai track-tokens --report --format table\naitrackdown ai context --item-id EP-0001 --add \"requirements context\"\n\n# CLI Health and Diagnostics (v1.1.7+)\naitrackdown index-health --verbose\naitrackdown index-health --repair\n```\n\n## Audit Trail Support (v1.4.0+)\n\nTrack changes and maintain comprehensive audit trails with timestamped notes and state change reasons:\n\n```bash\n# Add general notes to any issue or task\naitrackdown issue update ISS-0001 --notes \"Discussed with team, approach approved\"\naitrackdown task update TSK-0001 --notes \"Found edge case, adding additional validation\"\n\n# Document reasons for state changes\naitrackdown issue update ISS-0001 --status active --reason \"Requirements finalized, starting implementation\"\naitrackdown issue update ISS-0001 --state ready_for_qa --reason \"All tests passing, code review completed\"\n\n# Combine notes and reasons in a single update\naitrackdown issue update ISS-0001 --status completed --reason \"All acceptance criteria met\" --notes \"Performance optimized, 50% faster than baseline\"\n\n# Add completion notes when finishing work\naitrackdown issue complete ISS-0001 --completion-notes \"Implemented with caching strategy, reduced API calls by 80%\"\naitrackdown task complete TSK-0001 --completion-notes \"Refactored for better maintainability\"\n\n# Close issues with comments\naitrackdown issue close ISS-0002 --comment \"Duplicate of ISS-0001, consolidating work\"\n```\n\nAll notes and reasons are appended to the issue/task content with timestamps, creating a permanent audit trail in the markdown files. This is perfect for:\n- Tracking decision rationale\n- Documenting progress and blockers\n- Creating accountability records\n- Supporting compliance requirements\n- Facilitating team communication\n\n## Pull Request Management\n\nComprehensive PR management with 12 powerful commands and enhanced performance:\n\n```bash\n# Create PR from completed tasks (epic-assigned or standalone issues)\naitrackdown --project-dir /path/to/project pr create \"Implement user authentication\" --issue ISS-0001 --from-tasks TSK-0001,TSK-0002\naitrackdown pr create \"Bug fix for standalone issue\" --issue ISS-0005 --priority urgent\n\n# List and filter PRs (< 100ms response time)\naitrackdown pr list --pr-status open --assignee @developer --priority high\naitrackdown pr list --format table --show-details\n\n# Review and approve PRs with enhanced templates\naitrackdown pr review PR-0001 --approve --comments \"LGTM! Great implementation\"\naitrackdown pr approve PR-0001 --auto-merge --merge-strategy squash\n\n# Batch operations for multiple PRs (< 1s for 10 PRs)\naitrackdown pr batch --operation approve --filter pr-status:open --filter assignee:@team\naitrackdown pr batch --operation merge --filter pr-status:approved --merge-strategy squash\n\n# Advanced PR management with anywhere-submit\naitrackdown --project-dir /path/to/project pr dependencies PR-0001 --add-dependency PR-0002\naitrackdown pr sync --github --repo owner/repo --update-status\naitrackdown pr archive --status merged --older-than 6months\n```\n\n### PR Features\n\n- **GitHub-Independent**: Complete PR lifecycle without external dependencies\n- **File-based Storage**: PRs stored as markdown files with YAML frontmatter\n- **Status-based Organization**: Automatic file movement (draft → open → review → approved → merged)\n- **Enhanced Template System**: Bundled templates with fallback mechanisms\n- **Batch Operations**: Efficient bulk operations for agent-driven workflows\n- **Review System**: Structured reviews with approval tracking\n- **Performance Optimized**: <100ms average response times with intelligent indexing\n- **Anywhere-Submit**: Execute PR commands from any location with --project-dir\n\n## Performance Improvements (v3.0.0)\n\n### Intelligent Indexing System\n- **90%+ Performance Improvement**: Operations that took 2-5 seconds now complete in <10ms\n- **Automatic Index Management**: `.ai-trackdown-index` file provides instant lookups\n- **Memory Efficient**: <5MB memory usage even for large projects (1000+ items)\n- **Real-time Updates**: Index automatically updates when files change\n\n### Performance Benchmarks\n- **Status Command**: <10ms (was 2-5 seconds)\n- **Epic List**: <50ms (was 3-8 seconds)\n- **PR Operations**: <100ms average response time\n- **Search Operations**: Instant hash-based lookups\n\n### Template System Enhancements\n- **Bundled Templates**: Default templates included with CLI installation\n- **Robust Fallbacks**: Automatic fallback to bundled templates when project templates missing\n- **Multiple Path Resolution**: Works across different build structures and deployment methods\n\n## Project Structure\n\nai-trackdown creates a hierarchical project structure:\n\n```\nproject/\n├── .ai-trackdown/\n│   ├── config.yaml              # Project configuration\n│   ├── templates/               # YAML frontmatter templates\n│   └── cache/                   # Local cache files\n├── tasks/                       # Unified directory structure (v3.0.0)\n│   ├── .ai-trackdown-index      # Performance indexing system (v3.0.0)\n│   ├── epics/\n│   │   └── EP-0001-feature-name.md  # Epic with YAML frontmatter\n│   ├── issues/\n│   │   └── ISS-0001-issue-name.md   # Issues linked to epics\n│   ├── tasks/\n│   │   └── TSK-0001-task-name.md    # Tasks linked to issues\n│   ├── prs/                     # Pull Request management (v2.0.0)\n│   │   ├── draft/               # Draft PRs\n│   │   ├── active/\n│   │   │   ├── open/            # Open PRs ready for review\n│   │   │   ├── review/          # PRs under review\n│   │   │   └── approved/        # Approved PRs ready to merge\n│   │   ├── merged/              # Successfully merged PRs\n│   │   ├── closed/              # Closed/rejected PRs\n│   │   ├── reviews/             # PR review files\n│   │   └── logs/                # Operation logs\n│   └── templates/               # Project-specific templates\n│       ├── pr-review-default.yaml   # Default PR review template\n│       ├── pr-review-quick.yaml     # Quick PR review template\n│       └── pr-review-security.yaml  # Security PR review template\n└── llms.txt                     # Generated AI context\n```\n\n## Flexible Epic Assignment (v1.1.2)\n\nAI Trackdown now supports flexible epic assignment, allowing teams to work with or without epic structure:\n\n### Choose Your Workflow\n\n**Option 1: Epic-First Workflow (Traditional)**\n```bash\n# Create epic first\naitrackdown epic create \"User Authentication System\" --priority high\n\n# Create issues under epic\naitrackdown issue create \"Login Flow Implementation\" --epic EP-0001\naitrackdown issue create \"JWT Token Validation\" --epic EP-0001\n```\n\n**Option 2: Issue-First Workflow (Flexible)**\n```bash\n# Create standalone issues\naitrackdown issue create \"Bug fix for login validation\" --priority medium\naitrackdown issue create \"Update user profile form\" --priority low\n\n# Optionally assign to epic later\naitrackdown issue update ISS-0001 --epic EP-0001\n```\n\n**Option 3: Mixed Workflow (Best of Both)**\n```bash\n# Some issues belong to epics\naitrackdown issue create \"Feature A implementation\" --epic EP-0001\n\n# Others stand alone\naitrackdown issue create \"Emergency hotfix\" --priority urgent\n\n# Convert standalone to epic-assigned later\naitrackdown issue update ISS-0003 --epic EP-0002\n```\n\n### Migration Benefits\n\n- **Backward Compatible**: Existing epic-assigned workflows unchanged\n- **No Breaking Changes**: All existing commands work exactly as before  \n- **Gradual Adoption**: Teams can migrate to flexible workflows over time\n- **Performance**: Optional epic validation improves parser performance\n- **Simplified CI/CD**: Automated issue creation without epic dependencies\n\n### When to Use Each Approach\n\n**Use Epic-First When:**\n- Managing large, structured features\n- Team prefers hierarchical planning\n- Epic-level reporting and tracking needed\n- Long-term project organization required\n\n**Use Issue-First When:**\n- Rapid development and iteration\n- Bug fixes and maintenance tasks\n- Small team or solo development\n- CI/CD automated issue creation\n\n## YAML Frontmatter\n\nAll items use structured YAML frontmatter for metadata:\n\n### Epic-Assigned Issue (Traditional Workflow)\n```yaml\n---\nissue_id: ISS-0001\nepic_id: EP-0001  # Optional - links to epic\ntitle: \"Login Flow Implementation\"\nstatus: active\npriority: high\nassignee: developer\nestimated_tokens: 800\n---\n\n# Issue Description\nImplement user login flow with JWT validation...\n```\n\n### Standalone Issue (Flexible Workflow)\n```yaml\n---\nissue_id: ISS-0002\ntitle: \"Independent bug fix\"\nstatus: planning\npriority: medium\nassignee: developer\n# epic_id is optional - can be added later if needed\n---\n\n# Issue Description\nFix validation error in user registration form...\n```\n\n### Epic Example\n```yaml\n---\nepic_id: EP-0001\ntitle: User Authentication System\nstatus: active\npriority: high\nassignee: developer\nestimated_tokens: 2000\nactual_tokens: 1500\nai_context: [authentication, security, user-management]\nrelated_issues: [ISS-0001, ISS-0002]\n---\n\n# Epic Description\nComprehensive user authentication system with JWT tokens...\n```\n\n## Migration from Legacy Systems\n\nConvert existing projects to ai-trackdown format:\n\n```bash\n# Migrate from old trackdown structure\naitrackdown migrate --from-trackdown ./old-project\n\n# Import from various formats\naitrackdown migrate --from-json project-data.json\naitrackdown migrate --from-csv tasks.csv\n```\n\n## Command Reference\n\n### Epic Commands\n- `epic create` - Create new epic with YAML frontmatter\n- `epic list` - List epics  \n- `epic show` - Show detailed epic with `--show-issues` and `--show-tasks` options\n- `epic update` - Update epic fields and metadata\n- `epic complete` - Mark epic complete with token tracking\n\n### Issue Commands  \n- `issue create` - Create issue with optional epic assignment (`--epic` is optional)\n- `issue assign` - Assign issue to team member\n- `issue update` - Update issue properties including epic assignment\n  - `--notes <text>` - Add timestamped notes to the issue\n  - `--reason <text>` - Document reason for state/status changes\n- `issue complete` - Complete issue with auto-task completion\n  - `--completion-notes <text>` - Add completion notes to the issue\n- `issue close` - Close issue (mark as completed)\n  - `--comment <text>` - Add closing comment\n- `issue list` - List issues (basic listing)\n- `issue show` - Show detailed issue information\n\n### Task Commands\n- `task create` - Create task linked to issue\n- `task complete` - Complete task with time/token tracking\n  - `--completion-notes <text>` - Add completion notes to the task\n- `task list` - List tasks (basic listing)\n- `task update` - Update task status and metadata\n  - `--notes <text>` - Add timestamped notes to the task\n  - `--reason <text>` - Document reason for state/status changes\n\n### Pull Request Commands (v2.0.0+)\n- `pr create` - Create PR from templates with auto-linking\n- `pr list` - List PRs with advanced filtering (`--pr-status`, `--assignee`, `--priority`, `--epic`, etc.)\n- `pr show` - Show detailed PR with relationships\n- `pr update` - Update PR properties and metadata\n- `pr review` - Create structured PR reviews\n- `pr approve` - Approve PR with optional auto-merge\n- `pr merge` - Merge PR with strategy selection\n- `pr close` - Close PR without merging\n- `pr batch` - Perform bulk operations on multiple PRs\n- `pr dependencies` - Manage PR dependencies\n- `pr sync` - Synchronize with external systems\n- `pr archive` - Archive old PRs with compression\n\n### AI Commands\n- `ai generate-llms-txt` - Generate AI context file\n- `ai track-tokens` - Track and report token usage\n- `ai context` - Manage AI context for items\n\n### Project Commands\n- `init` - Initialize new ai-trackdown project\n- `status` - Show project overview with metrics (< 10ms with indexing)\n- `export` - Export project data in various formats\n- `index-health` - Diagnostic command for CLI index validation and repair\n\n## Troubleshooting\n\n### CLI Index Issues (Resolved in v1.1.7)\n\n**Previous Issue**: \"No items found\" errors in status and backlog commands due to index corruption  \n**Resolution**: Automatic index validation and repair system with new index-health command\n\n**Previous Issue**: Index corruption causing CLI commands to fail  \n**Resolution**: Built-in health checks for index integrity with automatic recovery\n\n**Previous Issue**: Manual index rebuilding required when corruption detected  \n**Resolution**: Graceful handling of index corruption scenarios with auto-repair\n\n#### Using the index-health Command\n\n```bash\n# Basic health check\naitrackdown index-health\n\n# Detailed diagnostics with verbose output\naitrackdown index-health --verbose\n\n# Auto-repair detected issues\naitrackdown index-health --repair\n\n# Force complete index rebuild\naitrackdown index-health --rebuild-index\n```\n\n### Epic Assignment Issues (Resolved in v1.1.2)\n\n**Previous Issue**: \"epic_id is required\" parser errors when creating standalone issues\n**Resolution**: Epic IDs are now optional in all ticket formats\n\n**Previous Issue**: Parser validation failed when epic_id field was missing  \n**Resolution**: Updated TypeScript interfaces and parser to handle optional epic assignment\n\n**Previous Issue**: Could not create issues without epic assignment  \n**Resolution**: Issue creation now works with or without epic_id field\n\n### Common Migration Questions\n\n**Q: Will my existing epic-assigned issues still work?**  \nA: Yes, all existing workflows are fully backward compatible. No changes needed.\n\n**Q: Can I mix epic-assigned and standalone issues in the same project?**  \nA: Yes, you can use any combination. The parser handles both formats seamlessly.\n\n**Q: How do I convert a standalone issue to epic-assigned later?**  \nA: Use `aitrackdown issue update ISS-XXXX --epic EP-YYYY` to assign an epic to an existing issue.\n\n**Q: Do I need to update my templates?**  \nA: No, existing templates continue to work. Epic_id field is optional in all templates.\n\n**Q: Will this affect performance?**  \nA: Performance actually improves due to optional validation reducing parser overhead.\n\n### General Troubleshooting\n\nFor other issues, check:\n1. Verify ai-trackdown initialization: `aitrackdown status`\n2. Check CLI index health: `aitrackdown index-health` (v1.1.7+)\n3. Check project structure: Ensure `.ai-trackdown/` directory exists\n4. Template issues: CLI includes bundled fallback templates\n5. Performance: Index rebuilds automatically if corrupted or use `aitrackdown index-health --repair`\n\n## Recent Enhancements\n\n### Major Enhancements\n\n#### CLI Index Reliability (v1.1.7)\n- **Index Corruption Fix**: Resolved \"No items found\" errors in status and backlog commands\n- **Auto-Repair System**: Automatic detection and repair of corrupted index files  \n- **Health Monitoring**: New index-health command for diagnostic and repair operations\n- **Enhanced Error Recovery**: Graceful handling of index corruption scenarios\n- **Improved CLI Reliability**: Built-in health checks for index integrity\n- **Performance Consistency**: Ensures reliable CLI performance across all operations\n\n#### Flexible Epic Assignment (v1.1.2)\n- **Optional Epic IDs**: Create standalone issues without epic assignment requirement\n- **Backward Compatible**: All existing epic-assigned workflows continue unchanged\n- **Mixed Workflows**: Support both epic-assigned and standalone issues in same project\n- **Performance Improvement**: Optional validation reduces parser overhead\n- **CI/CD Friendly**: Automated issue creation without epic dependencies\n- **Gradual Migration**: Teams can adopt flexible workflows over time\n\n#### Anywhere-Submit Functionality\n- **Global Project Access**: Execute commands from any location using `--project-dir`\n- **CI/CD Integration**: Perfect for automated workflows and build systems\n- **Multi-Project Management**: Manage multiple projects from a single location\n\n#### Performance Revolution\n- **90%+ Speed Improvement**: Intelligent indexing system (.ai-trackdown-index)\n- **Sub-10ms Operations**: Status and listing commands complete in <10ms\n- **Memory Efficient**: <5MB memory usage for large projects\n- **Real-time Updates**: Index automatically maintains itself\n\n#### Enhanced Template System\n- **Bundled Templates**: Default templates included with CLI installation\n- **Robust Fallbacks**: Automatic fallback when project templates missing\n- **Multiple Path Resolution**: Works across different build structures\n- **Zero Configuration**: Works out-of-the-box without setup\n\n#### Directory Structure Improvements\n- **Unified Path Resolution**: Consistent path handling across all commands\n- **Configurable Root**: Use `--root-dir` or `--tasks-dir` for custom layouts\n- **Legacy Compatibility**: Seamless migration from older structures\n\n### Bug Fixes\n- Fixed template loading issues in different deployment scenarios\n- Resolved path resolution conflicts in distributed environments\n- Improved error handling and user feedback\n- Fixed CLI option parsing inconsistencies\n\n### Migration Notes\n- All existing projects continue to work without changes\n- New projects automatically get performance optimizations\n- Legacy projects benefit from performance improvements immediately\n- No breaking changes to existing command syntax\n\n","readmeFilename":"README.md"}