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These components are available on\nNPM and github\n\nclinicalhelper: <br />\nhttps://github.com/clinicalhelper/clinicalhelper<br />\nhttps://www.npmjs.com/package/@clinicalhelper/clinicalhelper\n\nclinicalhelperclient: <br />\nhttps://github.com/clinicalhelper/clinicalhelperclient<br />\nhttps://www.npmjs.com/package/@clinicalhelper/clinicalhelperclient\n\nThe Clinical Helper application has been tested and verified on the AWS HIPAA reference architecture.\n\nFor a quick tour of the Clinical Helper application click <a href=\"https://github.com/clinicalhelper/clinicalhelperclient/blob/master/public/docs/quicktour.pdf\" target=\"_blank\">here</a>.\nFor detailed information on simplenodeorm see <a href=\"https://github.com/simplenodeorm/simplenodeorm/blob/master/simplenodeorm.pdf\" target=\"_blank\">simplenodeorm.pdf</a>\n\nA typical Clinical Helper deployment architecture would consist of:\n\n1. Ubuntu 19 server\n2. Nodejs 13\n3. apache2 web server\n4. MySQL 8\n\nTo get started:\n-  Setup an Ubuntu 19 server with the applications listed above.\n-  Clone the clinicalhelper application to the desired location\n-  From the clinicalhelper directory run \"npm update\" to pull in the required dependencies\n-  Modify the appconfig.json file found in &lt;clinicalhelper-install-location&gt; and modify\n   the various path entries as required:\n```\n   {\n     \"testMode\" : false,\n     \"dbConfiguration\" : \"/<install-location>/clinicalhelper/dbconfig/dbconfig.json\",\n     \"defaultMaxJoinDepth\" : 4,\n     \"defaultDesignTableDepth\": 4,\n     \"createTablesIfRequired\" : false,\n     \"apiPort\" : 8888,\n     \"logFile\" : \"/<install-location>/clinicalhelper/logs/clinicalhelper.log\",\n     \"logLevel\" : \"info\",\n     \"maxRowsForGetAll\" : 1000,\n     \"authorizer\": \"auth/ClinicalHelperAuthorizer\",\n     \"chartjsurl\": \"https://cdnjs.cloudflare.com/ajax/libs/Chart.js/2.8.0/Chart.min.js\",\n     \"ormModuleRootPath\": \"orm\",\n     \"context\": \"clinicalhelper\",\n     \"queryDocumentRoot\" : \"/<install-location>/clinicalhelper/reports/docs/queries\",\n     \"reportDocumentRoot\" : \"/<install-location>/clinicalhelper/reports/docs/reports\",\n     \"reportDocumentGroupsDefinition\": \"/<install-location>/clinicalhelper/reports/docs/report-document-groups.json\",\n     \"queryDocumentGroupsDefinition\": \"/<install-location>/clinicalhelper/reports/docs/query-document-groups.json\",\n     \"formCacheTimeout\": 3660,\n     \"reportCacheTimeout\": 3660,\n     \"lookupListCacheTimeout\": 600,\n     \"reportHierarchyCacheTimeout\": 3660,\n     \"defaultCacheTimeout\": 60,\n     \"sessionCacheTimeout\": 3660,\n     \"websiteUrl\": \"<clinical-helper-client-url>,\n     \"redisCache\": false,\n     \"redisClusterPort\": 0,\n     \"redisClusterHost\": \"\",\n     \"aliases\" : {}\n   }\n   \n```\n   For more information on the appconfig.json settings see the simplenodeorm documentation <a href=\"https://github.com/simplenodeorm/simplenodeorm/blob/master/simplenodeorm.pdf\" target=\"_blank\">simplenodeorm.pdf</a>\n-  Update the dbconfig.json found at /&lt;install-location&gt;/clinicalhelper/dbconfig/dbconfig.json to setup the connection\n   pool:\n```\n   {\n   \t\"pools\": [\n   \t\t{\n   \t\t\t\"dbtype\": \"mysql\",\n   \t\t\t\"host\": \"localhost\",\n   \t\t\t\"user\": \"<my-user>\",\n   \t\t\t\"poolAlias\": \"<my-poolalias>\",\n   \t\t\t\"password\": \"<my-password>\",\n   \t\t\t\"database\": \"clinicalhelper\",\n   \t\t\t\"supportBigNumbers\": true,\n   \t\t\t\"waitForConnections\": true,\n   \t\t\t\"connectionLimit\": 20\n   \t\t}\n   \t]\n   }\n```\n   Utilities for generating the Clinical Helper database are found in /&lt;install-location&gt;/clinicalhelper/dbconfig<br />\n   <br />clinicalhelper.sql<br />\n   practice-update.sh\n   \n   Create an in input data initialization file with data as follows:\n```\n   SCHEMA_NAME=\"my-db-schemaname\"\n   DBUSER_NAME=\"my-db-username\"\n   PRACTICE_NAME=\"my-practice-name\"\n   SUPER_USER_ROOT_PASSWORD=\"application-super-user-password\"\n   SUPER_USER_PASSWORD=`echo -n \"$SUPER_USER_ROOT_PASSWORD\" | md5sum | sed 's/ .*$//'`\n   DBUSER_PASSWORD=\"my-database-password\"\n   PRACTICE_ADDRESS=\"my-practice-address\"\n   PRACTICE_CITY=\"my-practice-city\"\n   PRACTICE_STATE=\"my-practice-state-abbreviation\"\n   PRACTICE_ZIP=\"my-practice-zipcode\"\n   PRACTICE_PHONE=\"my-practice-phonenumber\"\n```\n   From a location that contains clinicalhelper.sql, practice-update.sh and the data file run the following from the\n   the command line:\n   \n   ./practice-update.sh init.data\n        \n   This will generate a file named init.sql that you can use to initialize the Clinical Helper schema.\n\n-  Test the clinicalhelper setup by running \"node ClinicalHelper.js\" from the\n   clinicalhelper directory. You should see output similar to the following:\n\n```\n   info: creating connection pools...\n   info:     <my-poolalias> connection pool created\n   info: loading api ORM definitions...\n   info: loading orm definitions...\n   info: orm definitions loaded\n   info: ORM definitions loaded \n   info: starting api server...\n   info: ClinicalHelper server started\n   info: api server is live on port 8888\n```\n-  Kill the currently running ClinicalHelper instance\n-  Install the pm2 process manager by  running \"npm install pm2 -g\"    \n-  From the clinicalhelper directory run \"pm2 start ClinicalHelper.js\"\n-  Run \"pm2 startup\" - this will output a command that you will need to copy and run\n   from the command line.\n-  Run \"pm2 save\" - Clinical Helper should now run on startup. \n    You can also run \"pm2 status\" and \"pm2 stop ClinicalHelper\"\n-  Configure apache2 to proxy requests to the clinicalhelper nodejs backend by adding something \n   the following to the appropriate apache2 conf file:\n\n```\n    <VirtualHost 10.0.0.3:443>\n        DocumentRoot /var/www/html\n        SSLEngine on\n        SSLCertificateFile /<clinicalhelper-install-location>/clinicalhelper/cert/server.crt\n        SSLCertificateKeyFile /<clinicalhelper-install-location>/clinicalhelper/cert/server.key\n       ProxyRequests off\n        ProxyPreserveHost on\n        ProxyVia Full\n        <Proxy *>\n            Require all granted\n        </Proxy>\n    \n        <Location /node>\n            ProxyPass http://localhost:8888\n            ProxyPassReverse  http://localhost:8888\n        </Location>\n        <Directory \"/var/www/html\">\n            Options Indexes FollowSymLinks\n            AllowOverride All\n            Require all granted\n        </Directory>\n    </VirtualHost>\n```\n-  Clone the clinicalhelperclient repository and modify the appconfig.json file\n    found at /&lt;clinicalhelperclient-install-location&gt;/src/appconfig.json\n-  Run \"npm update\" to pull in required dependencies    \n-  Modify the following entry in appconfig.json:\n    \"apiServerUrl\": \"http://&lt;your-host&gt;/node\",\n-  Run the npm run build command to build a production react build. Copy everything under the\n    generated /&lt;clinicalhelperclient-install-location&gt;/build folder to /var/www/html on the ubuntu server.\n-  Restart the apache2 service ensure you can pull up the clinicalhelper app by pulling up url\n   https://&lt;your-host&gt;?context=your-pool-alias\n-  You should be able to login with username=system and password=password-created-during-db-init   \n   \n\n","readmeFilename":"README.md","license":"ISC"}