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Load a workbook, run its cells in dependency order, and verify results — all from the terminal or programmatically.\n\n> **Scope:** This is the headless v1 — a CLI and runtime. Code cells evaluate **MathTS expressions** (via the sandboxed expression engine), not arbitrary TypeScript. A desktop GUI is a separate, later project that builds on this runtime.\n\n## Installation\n\n```bash\nnpm install @danielsimonjr/mathts-workbook\n```\n\n## CLI\n\n```bash\n# Run a workbook: executes cells in dependency order and prints per-cell results.\n# Exits non-zero if any cell errors or any test assertion fails.\nmtsw run example.mtsw\nmtsw run example.mtsw -v        # also print the execution event stream\nmtsw run example.mtsw --json    # machine-readable envelope on stdout\nmtsw run example.mtsw -c gauss  # run one cell + its transitive deps (stateless)\nmtsw run example.mtsw --timeout 5000   # run in a worker; killed (exit 1) if it exceeds 5s\n\n# Describe the structured document model (cells, outputs, dependency graph).\nmtsw describe example.mtsw --json\n\n# Validate structure: ids, dependency references, and cycles.\nmtsw validate example.mtsw [--json]\n\n# Print the dependency graph (human only; use `describe --json` for structured data).\nmtsw graph example.mtsw                 # text adjacency\nmtsw graph example.mtsw -f mermaid      # Mermaid `graph TD`\n\n# Engine introspection (for tooling / GUIs).\nmtsw capabilities --json                # version, supported cell types, feature flags\nmtsw templates --json                   # available `new` templates\n\n# Scaffold a new workbook (<name>.mtsw) from a template.\nmtsw new my-notebook                    # basic template; refuses to overwrite\nmtsw new my-notebook -t basic --force   # overwrite an existing file\n\n# Strip cell outputs (for git): prints to stdout, or -w to rewrite in place.\nmtsw strip example.mtsw\nmtsw strip example.mtsw -w\n\n# Run and persist outputs back into the file (opt-in; never writes without --write).\nmtsw run example.mtsw --write\n\n# Edit cells (atomic, in-place; --json returns the updated doc, --dry-run previews).\nmtsw cell add example.mtsw --type code --id gauss --content \"n*(n+1)/2\" --depends-on n\nmtsw cell add example.mtsw --type code --id big --content-file body.txt   # or - for stdin\nmtsw cell edit example.mtsw gauss --content \"n*(n-1)/2\"\nmtsw cell move example.mtsw gauss --before n          # --before/--after <id> | --at <index>\nmtsw cell rename example.mtsw n count                 # rewrites dependents' depends_on\nmtsw cell rm example.mtsw n                           # refuses if cells depend on it\nmtsw cell rm example.mtsw n --force                   # removes + detaches dependents\n\n# Introspection + metadata.\nmtsw functions --json                  # functions/constants cells can call (autocomplete)\nmtsw meta get example.mtsw             # show workbook metadata\nmtsw meta set example.mtsw --title \"My Notebook\" --author Ada --tags physics,demo\n\n# Scaffold a workbook (templates: basic | empty | chart; -o writes to any path).\nmtsw new notebook                        # notebook.mtsw in the CWD (basic template)\nmtsw new draft --empty -o docs/draft.mtsw    # blank workbook at an explicit path\nmtsw new demo -t chart                       # a line-chart example workbook\n\n# Build a whole .mtsw from a JSON/YAML document (the inverse of `describe --json`).\necho '{\"cells\":[{\"id\":\"a\",\"type\":\"code\",\"content\":\"6 * 7\"}]}' | mtsw import -o out.mtsw\nmtsw import doc.json --json               # validates (ids/deps/cycles); stdout if no -o\n\n# Render to a self-contained HTML document (runs first, then renders).\nmtsw export example.mtsw -o example.html     # one offline file; stdout if no -o\nmtsw export example.mtsw --no-run            # render cached outputs without executing\nmtsw export example.mtsw --json              # envelope: { data: { path, bytes } }\n\n# Other export formats: --format tex|pdf|json|ipynb (html is the default).\nmtsw export example.mtsw --format ipynb -o example.ipynb   # Jupyter notebook (nbformat v4)\n\n# Persistent session for a GUI/tooling: JSON-RPC 2.0 over stdio (NDJSON).\nmtsw serve\n#   -> {\"jsonrpc\":\"2.0\",\"id\":1,\"method\":\"open\",\"params\":{\"path\":\"example.mtsw\"}}\n#   <- {\"jsonrpc\":\"2.0\",\"id\":1,\"result\":{...describe doc...}}\n#   -> {\"jsonrpc\":\"2.0\",\"id\":2,\"method\":\"run\"}              # streams cell/event notifications\n#   methods: open/describe/validate/graph/run/cell.*/meta.*/save/capabilities/functions/shutdown\n```\n\n**`export` (self-contained HTML).** `mtsw export <file> --format html` renders a\nnotebook to a single offline `.html` with **no external requests**: markdown prose,\n**equations typeset as MathML** (rendered natively by modern browsers — Chromium ≥109,\nFirefox, Safari), code cells with their embedded outputs, ✓/✗ test badges, and (as of\nthe chart slice) inline SVG plots. All rendering is MathTS-native — the generators\n(`toMathML`/`toHTML`/`toCSS`, plus `markdownToHtml`) live in the `expression` package\nalongside the node `.toTex()`/`.toHTML()` serializers, with **zero external\ndependencies**. Equation cells contain MathTS expression syntax (e.g.\n`c = 1 / sqrt(eps0 * mu0)`), not raw LaTeX; they are display-only and rendered via\n`toMathML`. By default `export` runs the workbook first (use `--no-run` for cached\noutputs); a whole-run failure such as a dependency cycle fails loudly rather than\nemitting a misleading document.\n\n**`export --format ipynb` (Jupyter notebook).** Renders the same run report to a\nstructurally conformant **nbformat v4** JSON document: `markdown` cells map to\nnotebook markdown cells; every other cell type (`code`, `equation`, `test`, `data`,\n`visualization`) maps to a notebook code cell, with a computed result becoming an\n`execute_result` output (`data['text/plain']`), an error becoming an `error` output,\nand a chart becoming a `display_data` output (inline SVG). Shares the same\nrun-then-render pipeline as `--format html`/`tex` (including `--no-run`, `--json`,\n`-o`).\n\n**`run --timeout <ms>` (kill-able worker-thread run).** By default, cell execution runs\nin-process with no time budget — a runaway cell (e.g. an unbounded computation) hangs\nthe process. `--timeout` runs the whole workbook in a `worker_threads` Worker and\nforcibly terminates it if it exceeds the budget, exiting 1 with a clear\n`workbook execution exceeded <ms>ms and was terminated` message; termination kills the\nworker outright, so it interrupts even a synchronous, CPU-bound runaway. It always runs\nthe entire workbook to completion-or-termination, so it's incompatible with `-c`/`-v`.\nThe same primitive is available programmatically as `runWorkbookWithTimeout(source, {\ntimeoutMs })` (throws `WorkbookTimeoutError` on timeout); cell outputs come back\npre-formatted to strings (via `formatResult`), since engine class instances (Complex,\nmatrices, …) don't survive the worker's `postMessage`.\n\n**`serve` (persistent session).** One long-lived process holds the workbook in memory with a per-cell result cache and a **stale set**: a `cell.*` edit marks that cell and its transitive dependents stale, and a `run` re-executes **only** the stale cells (reusing cached outputs for the rest) — the incremental latency win a GUI needs. Requests are processed strictly in order; `run` streams `cell/event` notifications (flushed before that run's response in v1, not mid-run). Edits stay in memory until `save`. Single-document per process; concurrent writers are last-write-wins.\n\n**Editing notes.** Cell edits are validity-preserving: an op that would create a duplicate/invalid id, a missing dependency, or a **dependency cycle** is rejected and the file is left byte-for-byte unchanged. Editing a cell clears its (now-stale) persisted output; `--at N` is the cell's final 0-based index; `--force` detaches dependents (clearing their outputs) but does not rewrite cell _content_, so a dependent that still references the removed id by name will error at run. Concurrent editors are last-write-wins (an optimistic-lock guard arrives with the `serve` session).\n\nDiagnostics and errors are written to stderr; results (including `--json`) go to stdout, so the exit code can be used in scripts independently of the output.\n\n**Machine contract (`--json`).** Every `--json` command emits one envelope on stdout:\n`{ schemaVersion: {major,minor}, command, ok, data, problems }`. The envelope is\nemitted even on failure (and is cycle/BigInt-safe, so it never crashes on\npathological data); the exit code mirrors `ok` for shells, but tooling/GUIs\nshould read `ok` and treat a missing/unparseable envelope as the only transport\nerror. Compatibility rule: ignore unknown fields when `major` matches; refuse on\na `major` mismatch. `run --cell <id>` is stateless (it recomputes the target's\ntransitive deps each call; `run --cell --write` persists only the executed\ncells). This is the contract a GUI binds to; a persistent `serve` mode (streaming\nevents, incremental re-execution) is planned.\n\n**Saving / round-trip.** `serializeWorkbook` (and the write commands above) round-trips a workbook through the parser: structure is preserved exactly, and persisted `output` values round-trip best-effort (plain numbers/strings/arrays/objects exactly; exotic types to their plain shape). All writes are **atomic** (temp file + rename). Note that any write path is parse→serialize and therefore **drops YAML comments and re-orders keys** — a CST-preserving in-place rewrite is a future enhancement.\n\n## Programmatic API\n\n```typescript\nimport { parseWorkbook, createExecutor, formatResult } from '@danielsimonjr/mathts-workbook';\n\nconst content = `\nversion: \"1.0\"\nmetadata:\n  title: \"My Workbook\"\nruntime:\n  engine: mathts\n  execution: reactive\ncells:\n  - code: \"n * (n + 1) / 2\"\n    id: gaussSum\n    depends_on: [n]\n  - code: \"10\"\n    id: n\n  - test: \"gaussSum == 55\"\n    id: checkGauss\n    depends_on: [gaussSum]\n`;\n\nconst result = parseWorkbook(content);\nif (result.success && result.workbook) {\n  const report = await createExecutor(result.workbook).runReport();\n  for (const cell of report.cells) {\n    console.log(cell.id, cell.status, formatResult(cell.output));\n  }\n  console.log('ok:', report.ok);\n}\n```\n\n`runReport()` is continue-on-error and returns a structured `RunResult` (it never throws on a cell failure, and refuses a workbook with a dependency cycle). The older `runAll()` remains available as an event-stream API that throws on the first cell error.\n\n## Workbook format (.mtsw)\n\n```yaml\nversion: '1.0'\nmetadata:\n  title: 'Example'\n  author: 'Your Name'\n\nruntime:\n  engine: mathts\n  execution: reactive # reactive | sequential | manual\n\ncells:\n  - markdown: |\n      # Introduction\n    id: intro\n\n  - code: '{ pi: 3.14159, e: 2.71828 }'\n    id: constants\n\n  - test: 'constants.pi > 3.14'\n    id: checkPi\n    depends_on: [constants]\n```\n\nEach cell is a YAML mapping with **exactly one** type key (`code`, `markdown`, `data`, `test`, …) whose value is the cell content, plus:\n\n- **`id`** (required) — must be a valid identifier (`[A-Za-z_][A-Za-z0-9_]*`); ids are how cells are referenced.\n- **`depends_on`** (optional) — a list of cell ids this cell depends on.\n\n### Dependencies & scope\n\nA dependency's result is injected into a cell's evaluation scope as a variable named by the dependency's id. To expose several values, return an object literal and read it with property access:\n\n```yaml\ncells:\n  - code: '{ n: 2, m: 3 }'\n    id: pair\n  - code: 'pair.n + pair.m' # -> 5\n    id: total\n    depends_on: [pair]\n```\n\nScope is **direct-only (non-transitive)**: a cell sees only the cells in its own `depends_on`, not their dependencies. To use a transitive value, list it explicitly.\n\n### Test cells\n\nA `test` cell's expression must evaluate to a **boolean**: `true` passes, `false` fails, and a non-boolean result is reported as an error (use an explicit comparison). A failing test makes `mtsw run` exit non-zero — workbooks can verify themselves.\n\n## Cell types (v1)\n\n| Type                                               | Status | Description                                            |\n| -------------------------------------------------- | ------ | ------------------------------------------------------ |\n| `markdown`                                         | ✅     | Documentation (passed through verbatim)                |\n| `code`                                             | ✅     | MathTS expression script; last value is the result     |\n| `data`                                             | ✅     | Structured YAML, parsed (hardened) into a value        |\n| `test`                                             | ✅     | Boolean assertion (`true` = pass)                      |\n| `tensor` / `equation` / `visualization` / `export` | ⏳     | Reserved; not executed in v1 (reported as unsupported) |\n\n## Execution modes\n\n- **reactive** — emits stale events for dependents when a cell re-runs\n- **sequential** — top-to-bottom (dependency) order\n- **manual** — explicit trigger only\n\n## Security\n\nCode and test cells execute only through the MathTS sandboxed expression engine — no `eval`, `Function`, or `vm`. YAML (both the document and `data`-cell payloads) is parsed with a hardened core-schema configuration and a prototype-pollution guard.\n\n## License\n\nMIT\n","readmeFilename":"README.md"}