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Generate Instruction Files\n\nScans your project and generates AI instruction files based on detected technologies.\n\n```bash\nmagic-helix run [options]\n```\n\n**Options:**\n- `--dry-run` - Preview what would be generated without writing files\n- `--force` - Overwrite files and prune without prompting\n- `--skip-pruning` - Don't ask to remove old files\n- `--output-dir <path>` - Custom output directory (default: `.github/instructions`)\n- `--config <path>` - Path to custom config file\n- `--verbose` - Show detailed output\n- `--quiet` - Show minimal output\n- `--project <name>` - Target a specific project only\n\n**Examples:**\n```bash\n# Basic usage\nmagic-helix run\n\n# Dry run to see what would be generated\nmagic-helix run --dry-run\n\n# Generate for specific project only\nmagic-helix run --project my-app\n\n# Use custom output directory\nmagic-helix run --output-dir .ai/instructions\n\n# Quiet mode with force overwrite\nmagic-helix run --quiet --force\n```\n\n### `refresh` (alias: `resync`) - Update Instruction Files\n\nRescans your project and updates existing instruction files with new information.\n\n```bash\nmagic-helix refresh [options]\n```\n\n**Options:**\n- `--config <path>` - Path to custom config file\n- `--verbose` - Show detailed output\n- `--quiet` - Show minimal output\n- `--project <name>` - Target a specific project only\n\n**Examples:**\n```bash\n# Refresh all instruction files\nmagic-helix refresh\n\n# Refresh specific project\nmagic-helix refresh --project my-app\n```\n\n### `list` - Show Project Information\n\nLists detected projects, tags, and templates without generating files.\n\n```bash\nmagic-helix list\n```\n\n**Example Output:**\n```\n📦 my-app\n   Path: packages/my-app\n   Tags: framework-vue, style-tailwind, test-vitest, lang-typescript\n   Would generate: my-app.vue-core.md, my-app.style-tailwind.md, ...\n```\n\n### `validate` - Check Instruction Files\n\nValidates instruction files for common issues and integrity.\n\n```bash\nmagic-helix validate\n```\n\n**Checks performed:**\n- Frontmatter presence and structure\n- Required `applyTo` field\n- Content after frontmatter\n- Glob pattern validity\n\n### `clean` - Remove Generated Files\n\nRemoves all generated instruction files with confirmation.\n\n```bash\nmagic-helix clean\n```\n\n### `init` - Initialize Custom Configuration\n\nCreates a minimal configuration file for extending built-in rules.\n\n```bash\nmagic-helix init\n```\n\nCreates:\n- `magic-helix.config.json` - Configuration file (legacy: `ai-aligner.config.json` still supported)\n- `ai_templates/` - Directory for custom templates\n\n## ⚙️ Configuration\n\n### Built-in Detection\n\nMagicAgentHelix automatically detects:\n\n**Frameworks:**\n- Vue.js, React, Angular, NestJS\n\n**Styling:**\n- Tailwind CSS, PrimeVue, Material-UI, Quasar\n\n**Testing:**\n- Vitest, Jest, Cypress, Playwright\n\n**State Management:**\n- RxJS, Pinia, Redux, Zustand\n\n**Languages:**\n- TypeScript, JavaScript, Go, Python\n\n### Custom Configuration\n\nCreate `magic-helix.config.json` to extend or override:\n\n```json\n{\n  \"target\": \"github-copilot\",\n  \"templateDirectory\": \"ai_templates\",\n  \"outputDirectory\": \".github/instructions\",\n  \"dependencyTagMap\": {\n    \"my-internal-package\": \"domain-my-rules\"\n  },\n  \"configFileTagMap\": {\n    \"my-custom-config.json\": \"domain-my-rules\"\n  },\n  \"fileGlobTagMap\": {\n    \"src/specific-folder/**/*.ts\": \"domain-my-rules\"\n  },\n  \"tagTemplateMap\": {\n    \"domain-my-rules\": [\n      { \"template\": \"my-custom-rule.md\", \"suffix\": \"my-rule.md\" }\n    ]\n  }\n}\n```\n\n## 🎨 Custom Templates\n\n1. Run `magic-helix init` to create the template directory\n2. Add your custom `.md` files in `ai_templates/`\n3. Reference them in your config's `tagTemplateMap`\n\nTemplate format:\n```markdown\n# My Custom Rule\n\n- Follow this pattern\n- Use this convention\n- Avoid that anti-pattern\n```\n\n## 🔧 VS Code + GitHub Copilot Integration\n\nAdd to your `.vscode/settings.json`:\n\n```json\n{\n  \"github.copilot.advanced\": {\n    \"instructions\": \".github/instructions\"\n  }\n}\n```\n\nThis ensures Copilot always reads your instruction files. Restart VS Code after adding.\n\n## 📊 Generated File Format\n\nGenerated instruction files include frontmatter with precise file targeting:\n\n```markdown\n---\n# Auto-generated by ai-aligner for: my-app\n# Source Template: vue/vue-core.md\n# Generated: 2025-10-27T10:30:00.000Z\napplyTo: \"packages/my-app/src/**/*.{vue}\"\n---\n\n# Vue 3 Composition API Guidelines\n\n- Use `<script setup>` syntax\n- Prefer Composition API over Options API\n...\n```\n\n## 🚀 CI/CD Integration\n\n### GitHub Actions\n\n```yaml\nname: Update AI Instructions\n\non:\n  push:\n    branches: [main]\n\njobs:\n  update-instructions:\n    runs-on: ubuntu-latest\n    steps:\n      - uses: actions/checkout@v3\n      - uses: actions/setup-node@v3\n        with:\n          node-version: '20'\n      - run: npx @el-j/magic-agent-helix run --force\n      - uses: stefanzweifel/git-auto-commit-action@v4\n        with:\n          commit_message: \"chore: update AI instructions\"\n          file_pattern: \".github/instructions/*.md\"\n```\n\n## 📚 Examples\n\n### Monorepo with Multiple Frameworks\n\n```bash\n# List all detected projects\nmagic-helix list\n\n# Generate instructions for all projects\nmagic-helix run\n\n# Update just the frontend project\nmagic-helix refresh --project my-frontend\n```\n\n### Single Project\n\n```bash\n# Generate instructions\nmagic-helix run\n\n# Validate they're correct\nmagic-helix validate\n\n# Clean up if needed\nmagic-helix clean\n```\n\n## 🛠️ Troubleshooting\n\n### No files generated?\n\nRun `magic-helix list` to see if your project is detected and what tags are found.\n\n### Wrong file extensions in `applyTo`?\n\nThe CLI now automatically detects the right extensions based on your project's technologies.\n\n### Need to regenerate everything?\n\n```bash\nmagic-helix clean\nmagic-helix run\n```\n\n## 📖 More Information\n\nSee the [monorepo root README.md](../../README.md) for full development and testing instructions.\n\n## 📄 License\n\nMIT","readmeFilename":"README.md"}