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Pienaar"},"license":"MIT","homepage":"https://github.com/FNNDSC/mise/tree/main/packages/salsa#readme","keywords":["chris","fnndsc","vfs","logic"],"repository":{"url":"git+https://github.com/FNNDSC/mise.git","type":"git","directory":"packages/salsa"},"description":"Shared Application Logic and Service Assets for ChRIS","maintainers":[{"name":"jbernal0019","email":"jbernal0019@yahoo.es"},{"name":"jennydaman","email":"npm@sl.jennin.xyz"},{"name":"debio","email":"rudolph.pienaar@gmail.com"}],"readme":"```\n ____ _\n/ ___| __ _| |___ __ _\n\\___ \\ / _` | / __|/ _` |\n ___) | (_| | \\__ \\ (_| |\n|____/ \\__,_|_|___/\\__,_|\n```\n\n**Salsa Abstracts Logic Service Assets**\n\n`salsa` is the logic layer of the ChRIS interface ecosystem. It encapsulates high-level business intents and operational logic, serving as the bridge between user-facing interfaces (`chell`, `chili`) and the underlying infrastructure (`cumin` and `chrisapi`).\n\n## Installation\n\n```bash\nnpm install @fnndsc/salsa\n```\n\nRequires Node.js ≥ 20.12. Ships with TypeScript type definitions. Depends on [`@fnndsc/cumin`](https://github.com/FNNDSC/cumin).\n\n## Usage\n\n```typescript\nimport { files_listAll, fileContent_get, vfsDispatcher } from \"@fnndsc/salsa\";\n\n// Salsa returns pure data / typed objects — no CLI dependencies\nconst listing = await files_listAll({ limit: 1000, offset: 0 }, \"files\", \"/home/chris\");\nconst content = await fileContent_get(\"/home/chris/uploads/notes.txt\");\n```\n\nSee [Key Modules](#key-modules) for the full intent catalogue.\n\n## Purpose\n\n- **Consolidate Business Logic**: Centralises intents such as \"list directory\", \"upload file\", \"register plugin\", \"fetch feed note\". All frontends share identical behaviour.\n- **Frontend Agnostic**: No CLI-specific dependencies (`commander`, `process.stdout`). Returns pure data or typed objects.\n- **Virtual Filesystem**: Owns the VFS dispatcher that maps ChRIS API resources onto Unix-style paths — see [VFS](#virtual-filesystem-vfs) below.\n\n## Architecture: The Sandwich Model\n\n```text\n[ ChELL (REPL) ] [ Chili (CLI) ] [ Web App ] [ Mobile App ]\n | | | |\n +-----------------+---------------+ |\n | |\n v v\n [ Salsa (Logic / Intents) ] <-- YOU ARE HERE\n |\n v\n [ Cumin (State / Infrastructure) ]\n |\n v\n [ @fnndsc/chrisapi (Client) ]\n```\n\n## Key Modules\n\n### Filesystem\n\n| Function | Description |\n|----------|-------------|\n| `vfsDispatcher` | Routes `list`/`read` calls to the correct VFS provider by path prefix |\n| `files_list` | List a directory (paginated) |\n| `files_listAll` | Full directory listing (all pages) |\n| `fileContent_get` | Read remote file content |\n| `files_uploadPath` | Upload a local file or directory tree to ChRIS |\n| `files_touch` | Create an empty file |\n| `files_mkdir` | Create a directory |\n| `files_rm` | Delete a file or directory |\n| `files_cp` / `files_mv` | Copy / move |\n\n### Plugins & Store\n\n| Function | Description |\n|----------|-------------|\n| `plugins_list` / `plugins_listAll` | Fetch plugin list |\n| `plugin_checkExists` | Check if a plugin is already registered |\n| `plugin_registerWithAdmin` | Register a plugin via the admin endpoint |\n| `plugin_assignToComputeResources` | Assign plugin to compute environments |\n| `plugins_searchPeers` | Search peer ChRIS stores (e.g. cube.chrisproject.org) |\n| `plugin_importFromStore` | Import a plugin from peer store data |\n| `plugin_searchPeersByImage` | Resolve a Docker image to a peer-store plugin |\n\n### Feeds & Sub-resources\n\n| Function | Description |\n|----------|-------------|\n| `feeds_list` / `feeds_listAll` | Fetch feeds |\n| `feedNote_get` / `feedNote_update` | Read or update the singleton note on a feed |\n| `feedComments_list` | List comments on a feed |\n| `feedComment_create` / `feedComment_update` / `feedComment_delete` | Comment CRUD |\n\n### Pipelines & Workflows\n\n| Function | Description |\n|----------|-------------|\n| `pipelines_list` | List registered pipelines |\n| `workflow_create` | Instantiate a pipeline as a workflow on a feed |\n\n### Jobs (Plugin Instance Operations)\n\n| Function | Description |\n|----------|-------------|\n| `job_cancel(id)` | Cancel a running/scheduled instance (`PUT {status: cancelled}`) |\n| `job_delete(id)` | Delete a terminal instance record |\n| `job_statusFetch(id)` | Live-fetch current status from API (bypasses cache) |\n| `job_logFetch(id)` | Fetch stdout/stderr log for an instance |\n| `procCache_refresh([feedID])` | Rebuild the `/proc` job cache, optionally scoped to one feed |\n\n## Virtual Filesystem (VFS)\n\n`vfsDispatcher` translates a ChRIS path into a provider call. Each provider handles a path prefix and maps API resources onto filesystem semantics:\n\n| Path prefix | Provider | Backed by |\n|-------------|----------|-----------|\n| `/home//` | `HomeVfsProvider` | ChRIS user-file API |\n| `/home//feeds/` | `FeedVfsProvider` | Feed resources |\n| `/bin` | `BinVfsProvider` | Registered plugins (virtual executables) |\n| `/usr/bin` | `UsrBinVfsProvider` | Built-in shell commands (`whoami`, `whereami`) |\n| `/etc` | `EtcVfsProvider` | Config files (`compute.yaml`, `group`, `passwd`, `cube`) |\n| `/net/pacs/queries/` | `PacsVfsProvider` | PACS query results |\n| `/proc/jobs/` | `ProcVfsProvider` | Job monitoring DAG (backed by `ProcCache` in cumin) |\n| `*.chrislink` | resolved by dispatcher | Symlinks to other ChRIS paths |\n\nProviders implement a common interface: `list(path)` → `Result` and `read(path)` → `Result`.\n\n### `/proc/jobs/` — Job Monitoring\n\n`ProcVfsProvider` mirrors the computation DAG of every visible feed. Each plugin instance is a directory; virtual files inside expose live status, params, and log:\n\n```\n/proc/jobs/feed_123/\n├── status ← aggregate: running | finishedSuccessfully | finishedWithError\n├── title\n└── pl-dircopy_456/ ← type=job in VFSItem; ls -l shows colour-coded status\n ├── status ← live API fetch if non-terminal\n ├── params ← complete effective key=value run parameters, cached permanently\n ├── log ← never cached; decoded from CUBE's `raw` response\n └── pl-fshack_789/\n └── …\n```\n\nThe cache (`ProcCache` in cumin) holds flat topology maps for O(1) lookup and O(depth) path reconstruction. The daemon restores this normalized graph from an identity-scoped local checkpoint, validates visible feeds, then reconciles only new, changed, and active feeds; `proc refresh` explicitly runs the paginated global CUBE sweep. Terminal status persists; active status remains live. Freshness is visit-driven: revisiting a feed merges the nodes created or finished since the last visit (`min_end_date` from a per-feed cursor) and re-sweeps the active ones, a settled feed is re-checked at most once per ten minutes, and a `/proc/jobs` visit picks up feeds newer than the highest known id (walking the whole index once the roster is ten minutes old). `params` reads the complete `PluginInstance.parameters` collection, rather than instance-detail metadata. Logs remain uncached: ChELL decodes CUBE's base64/zlib-compressed `PluginInstance.raw` response and reads `compute.logs`; it never fetches from a spoke.\n\n## Development\n\n### Build\n\n```bash\nnpm run build\n```\n\n### Test\n\n```bash\nnpm run test\n```\n\n## License\n\nMIT — part of the [ChRIS Project](https://chrisproject.org).\n\n---\n_-30-_\n","readmeFilename":"README.md"}