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Atlas"},"license":"MIT","homepage":"https://graphiteatlas.com","keywords":["mcp","model-context-protocol","graphite-atlas","knowledge-graph","claude"],"repository":{"type":"git","url":"git+https://github.com/graphiteatlas/mcp.git"},"description":"Model Context Protocol server for Graphite Atlas","maintainers":[{"name":"fuzeelogik","email":"fuzeelogik@gmail.com"}],"readme":"# Graphite Atlas MCP Server\n\nA [Model Context Protocol (MCP)](https://modelcontextprotocol.io) server that provides Claude and other AI assistants with access to your Graphite Atlas knowledge graphs.\n\n## Features\n\n- 🗺️ **Atlas Management** (5 tools): Create, read, update, and delete knowledge graphs\n- 📍 **Point Operations** (6 tools): Add and manage nodes (entities) in your graphs\n- 🔗 **Path Operations** (6 tools): Create and manage edges (relationships) between points\n- 👁️ **View Management** (10 tools): Organize points into views with folders and visibility controls\n- 📦 **Batch Operations** (1 tool): Create multiple points and paths in a single atomic call\n- 🧠 **Brain Dump** (2 tools): AI-powered graph generation from unstructured text\n- ✅ **Validation & Ontology** (4 tools): Validate types, find duplicates, and browse the ontology\n- 📊 **Analytics** (4 tools): PageRank, betweenness centrality, neighborhoods, isolated nodes\n- 🧮 **MAGE Algorithms** (7 tools): Community detection, shortest path, node similarity, and more\n- 📋 **Context Brief** (2 tools): Generate atlas summaries for use as LLM system prompts\n\n**47 tools** across 10 categories. The server includes built-in ontology context so Claude knows what Atlas is and how to use it without needing extra prompts.\n\n## Installation\n\n### From npm\n\n```bash\nnpm install -g @graphite-atlas/mcp-server\n```\n\n### From source\n\n```bash\ncd mcp\nnpm install\nnpm run build\n```\n\n## Install the plugin (MCP + skills)\n\nThis repo ships as a **Claude Code plugin** — the MCP server *plus* the modeling\nknow-how to use it well. Installing the plugin wires up the `graphite-atlas` MCP\nserver **and** installs four skills that keep the agent typing, attaching, and\nstructuring your Atlas correctly instead of flailing:\n\n- **atlas-modeling** — the preflight: `name` not `label`, look up types first,\n  `upload_and_attach_file` (never an empty placeholder Document), `batch_create`\n  for 5+, and search-before-create to avoid duplicates.\n- **atlas-ontology** — the point/path type vocabulary, the 6 default folders,\n  and the 1–2-word view/folder naming rule.\n- **atlas-audit** — the `audit_atlas` whole-atlas review workflow and its five\n  enrichment categories.\n- **atlas-patterns** — domain recipes for org charts, processes, legal entities,\n  and metrics.\n\n### Install from the marketplace\n\n```bash\n# Add this repo as a plugin marketplace, then install the plugin\nclaude plugin marketplace add graphiteatlas/mcp\nclaude plugin install graphite-atlas\n```\n\nFor local development you can point the marketplace at a checkout instead:\n\n```bash\nclaude plugin marketplace add /path/to/graphiteatlas/mcp\nclaude plugin install graphite-atlas\n```\n\nAfter install, set your token so the bundled MCP server can authenticate\n(see [Generate a JWT Token](#1-generate-a-jwt-token) below):\n\n```bash\nexport GRAPHITE_ACCESS_TOKEN=\"your_token_here\"\n# GRAPHITE_API_URL defaults to https://graphiteatlas.com\n```\n\nVerify: the four `atlas-*` skills appear in Claude Code and the `graphite-atlas`\nMCP server loads (its tools become available). The plugin's default MCP config\nis the working stdio path (`npx -y @graphite-atlas/mcp-server`).\n\n### Hosted / OAuth variant (once deployed)\n\nThe default config runs the MCP server locally over stdio and works today. Once\nthe hosted OAuth endpoint is live (atlas#1451 / #1825), you can instead point\nthe plugin at the hosted `/api/mcp` URL and authenticate via browser OAuth\n(no long-lived token). Swap the `mcpServers.graphite-atlas` entry in\n`.claude-plugin/plugin.json` from the stdio `command`/`args` form to an HTTP\nform pointing at the hosted URL:\n\n```json\n\"mcpServers\": {\n  \"graphite-atlas\": {\n    \"type\": \"http\",\n    \"url\": \"https://graphiteatlas.com/api/mcp\"\n  }\n}\n```\n\n> **Skill drift:** the skills are hand-authored from Atlas's source of truth\n> (`ontology.json`, the Navigator prompt, the tool descriptions). When the\n> ontology changes, the skills must be updated by hand until atlas#1608\n> (auto-generate skills from `ontology.json` on change) lands.\n\n## Quick Start\n\n### 1. Generate a JWT Token\n\nBefore using the MCP server, you need a JWT access token from Graphite Atlas:\n\n1. **Log in** to https://graphiteatlas.com\n2. **Navigate** to Profile → API Apps tab\n3. **Create** a new API app:\n   - Click \"New App\"\n   - Name: \"Claude MCP\"\n   - Description: \"MCP server for Claude integration\"\n   - Click \"Create App\"\n4. **Generate a JWT token**:\n   - Click \"Generate Token\" on your new app\n   - Token Name: \"Claude\"\n   - Environment: Production (or Development for testing)\n   - Scopes: Select \"*\" (Full Access) for easiest setup\n   - Expires In: 90 days (recommended)\n   - Click \"Generate Token\"\n5. **Copy your JWT token** — it will only be shown **once**!\n\n### 2. Configure Your Client\n\n#### Claude Code (CLI)\n\nAdd to `~/.claude/claude_code_config.json`:\n\n```json\n{\n  \"mcpServers\": {\n    \"graphite-atlas\": {\n      \"command\": \"npx\",\n      \"args\": [\"@graphite-atlas/mcp-server\"],\n      \"env\": {\n        \"GRAPHITE_ACCESS_TOKEN\": \"your_token_here\",\n        \"GRAPHITE_API_URL\": \"https://graphiteatlas.com\"\n      }\n    }\n  }\n}\n```\n\n#### Claude Desktop\n\n**macOS**: `~/Library/Application Support/Claude/claude_desktop_config.json`\n\n**Windows**: `%APPDATA%\\Claude\\claude_desktop_config.json`\n\n```json\n{\n  \"mcpServers\": {\n    \"graphite-atlas\": {\n      \"command\": \"npx\",\n      \"args\": [\"@graphite-atlas/mcp-server\"],\n      \"env\": {\n        \"GRAPHITE_ACCESS_TOKEN\": \"your_token_here\",\n        \"GRAPHITE_API_URL\": \"https://graphiteatlas.com\"\n      }\n    }\n  }\n}\n```\n\n### 3. Restart and Test\n\nRestart your client, then ask Claude:\n\n```\n\"List my atlases\"\n```\n\nClaude should use the `list_atlases` tool to fetch and display your knowledge graphs.\n\n## Available Tools\n\n### Atlas Management (5 tools)\n\n| Tool | Description |\n|------|-------------|\n| `list_atlases` | List all knowledge graphs |\n| `get_atlas` | Get details of a specific atlas |\n| `create_atlas` | Create a new knowledge graph |\n| `update_atlas` | Update atlas name or description |\n| `delete_atlas` | Delete an atlas permanently |\n\n### Point Operations (6 tools)\n\nPoints are nodes in the graph — people, processes, systems, outcomes, etc.\n\n| Tool | Description |\n|------|-------------|\n| `list_points` | List all points in an atlas |\n| `get_point` | Get a specific point by ID |\n| `create_point` | Create a new point (name, type, properties) |\n| `update_point` | Update a point's name, type, or properties |\n| `delete_point` | Delete a point |\n| `search_points` | Search points by name or type |\n\n**Valid point types**: Person, Position, Group, Organization, Vendor, Process, Step, Review, Decision, Approval, Handoff, Task, Sequence, StepGroup, And, Or, System, Artifact, API, Equipment, Skill, Transport, Outcome, Metric, Physical Site, Date, TimeRange, Temporal, AbsoluteDate, RelativeOffset\n\nUse `lookup_ontology` to browse types and their descriptions before creating.\n\n### Path Operations (6 tools)\n\nPaths are typed relationships between points.\n\n| Tool | Description |\n|------|-------------|\n| `list_paths` | List all paths in an atlas |\n| `get_path` | Get a specific path by ID |\n| `create_path` | Create a path between two points |\n| `update_path` | Update a path's type or properties |\n| `delete_path` | Delete a path |\n| `search_paths` | Search paths by type |\n\n**Valid path types**: has_role, reports_to, member_of, responsible_for, assigned_to, has_skill, has_subsidiary, operates_under, has_interest, performs, has_step, followed_by, followed_by_if, creates_output, from_person, to_person, handoff_of, needs_input, uses_resource, measured_by, impacts, located_in, happens_before, happens_after, simultaneous_with, has_deadline, part_of\n\nUse `lookup_ontology` with `paths_for_type` to see which paths are valid for a given point type.\n\n### View Management (10 tools)\n\nViews organize subsets of points into named collections with layout and visibility controls.\n\n| Tool | Description |\n|------|-------------|\n| `list_views` | List all views in an atlas |\n| `get_view` | Get view details |\n| `create_view` | Create a new view |\n| `update_view` | Update view settings |\n| `delete_view` | Delete a view |\n| `get_view_points` | Get points in a view with visibility state |\n| `add_points_to_view` | Add/show points in a view |\n| `remove_points_from_view` | Remove/hide MANY points from a view (takes an array) |\n| `remove_point_from_view` | *Deprecated* — use `remove_points_from_view` |\n| `get_view_hierarchy` | Get the folder tree for views |\n\n### Batch Operations (1 tool)\n\n| Tool | Description |\n|------|-------------|\n| `batch_create` | Create multiple points and paths in one atomic call |\n\nBatch create accepts point names (not IDs) for path source/target, resolving them automatically. Useful for building out an entire org structure or process map in one call.\n\n### Brain Dump (2 tools)\n\n| Tool | Description |\n|------|-------------|\n| `brain_dump` | Generate a knowledge graph from unstructured text using AI |\n| `get_brain_dump_status` | Check the status of a brain dump operation |\n\nPass meeting notes, transcripts, or any narrative text and the AI will extract structured points and paths.\n\n### Validation & Ontology (4 tools)\n\n| Tool | Description |\n|------|-------------|\n| `validate_points` | Validate point types against the ontology before creation |\n| `validate_paths` | Validate path types against the ontology before creation |\n| `find_similar_points` | Find existing points similar to a proposed name (duplicate detection) |\n| `lookup_ontology` | Browse valid types, categories, and path constraints |\n\n#### `lookup_ontology` Query Modes\n\n| Mode | Description |\n|------|-------------|\n| `point_types` | List all valid point types, optionally filtered by category |\n| `path_types` | List all valid path types with source/target constraints |\n| `paths_for_type` | Show all valid paths from/to a specific point type |\n| `search` | Case-insensitive search across type names and descriptions |\n\n### Analytics (4 tools)\n\n| Tool | Description |\n|------|-------------|\n| `get_page_rank` | Rank nodes by influence/authority |\n| `get_betweenness_centrality` | Find bridge nodes connecting communities |\n| `get_node_neighborhood` | Get a node's immediate connections |\n| `find_isolated_nodes` | Find disconnected nodes with no relationships |\n\n### MAGE Graph Algorithms (7 tools)\n\nAdvanced algorithms powered by Memgraph's MAGE library.\n\n| Tool | Description |\n|------|-------------|\n| `mage_pagerank` | PageRank with configurable damping factor |\n| `mage_betweenness_centrality` | Betweenness centrality (normalized) |\n| `mage_detect_communities` | Community detection via Leiden algorithm |\n| `mage_connected_components` | Find disconnected subgraphs |\n| `mage_node_similarity` | Jaccard similarity between nodes |\n| `mage_shortest_path` | BFS shortest path between two nodes |\n| `mage_degree_centrality` | Most connected nodes (in/out/both) |\n\n### Context Brief (2 tools)\n\nGenerate structured summaries of your atlas data for use as LLM system prompts or persistent project context.\n\n| Tool | Description |\n|------|-------------|\n| `get_atlas_brief` | Get a structured context brief — entity types, key nodes, query patterns, and suggested questions |\n| `generate_setup` | Generate CLAUDE.md content combining the atlas brief with MCP tool instructions |\n\n#### Working with Context Briefs\n\n**Start each session with a brief:**\n```\n\"Give me a brief for atlas <id>\"\n```\nClaude will call `get_atlas_brief` and have full context about your data before you ask any questions.\n\n**Generate a persistent CLAUDE.md:**\n```\n\"Generate setup content for atlas <id> and save it to CLAUDE.md\"\n```\nClaude will call `generate_setup` and write a `CLAUDE.md` file that combines the atlas brief with tool usage instructions. Future sessions will load this context automatically without needing to call `get_atlas_brief` each time.\n\n**MCP Resources:**\n\nThe server also exposes each atlas as an MCP resource at `atlas://<atlas_id>/brief`. Some MCP clients (e.g. Claude Code) can list and read these resources directly. Reading one returns the same brief markdown as `get_atlas_brief`.\n\n> **Note:** MCP resource descriptions appear in `list_resources` output but are not automatically injected into context. Call `get_atlas_brief` or paste the `generate_setup` output into `CLAUDE.md` for persistent context.\n\n## JWT Scopes\n\nWhen generating your JWT token, select the scopes you need:\n\n| Scope | Required For | Description |\n|-------|-------------|-------------|\n| `*` | All operations | Full access to all resources (recommended) |\n| `read:atlases` | List/get atlases | View your knowledge graphs |\n| `write:atlases` | Create/update atlases | Create and modify atlases |\n| `delete:atlases` | Delete atlases | Permanently delete atlases |\n| `read:points` | List/get points | View nodes in your graphs |\n| `write:points` | Create/update points | Add and modify nodes |\n| `delete:points` | Delete points | Remove nodes |\n| `read:paths` | List/get paths | View relationships |\n| `write:paths` | Create/update paths | Add and modify relationships |\n| `delete:paths` | Delete paths | Remove relationships |\n| `read:schema` | Get schemas | View atlas ontology schemas |\n| `use:llm` | Brain dump | AI-powered graph generation |\n| `use:embeddings` | Semantic search | AI-powered semantic search |\n\n**Recommended**: `*` (Full Access)\n\n## Hosted / Remote Usage (Streamable HTTP Transport)\n\n**If you just want a remote endpoint, one is already running:**\n\n```\nhttps://graphiteatlas.com/api/mcp\n```\n\nIt's served by the Atlas app, supports OAuth 2.1 (dynamic client registration, no token to paste) as well as `Authorization: Bearer <token>`, and needs nothing installed. This is the URL to give Claude.ai, Cursor, VS Code, and Microsoft Copilot Studio.\n\nStarting in v1.5.0 this package also ships the **streamable HTTP transport** itself, for self-hosting against your own Atlas instance or for local development.\n\n### Quick start (self-hosted)\n\n```bash\n# Start HTTP server on port 3000\nnode dist/index.js --http\n# or: MCP_TRANSPORT=http node dist/index.js\n# or: PORT=8080 node dist/index.js --http\n```\n\nThe MCP endpoint is `POST /mcp` (and `GET /mcp` for SSE). A `GET /health` readiness probe is also available.\n\n**Authentication:** every request must carry `Authorization: Bearer <your-token>`. A missing header returns HTTP 401.\n\n```bash\n# Quick test with curl\ncurl -i -X POST http://localhost:3000/mcp \\\n  -H \"Content-Type: application/json\" \\\n  -H \"Authorization: Bearer YOUR_TOKEN_HERE\" \\\n  -d '{\"jsonrpc\":\"2.0\",\"id\":1,\"method\":\"initialize\",\"params\":{\"protocolVersion\":\"2024-11-05\",\"capabilities\":{},\"clientInfo\":{\"name\":\"curl\",\"version\":\"0\"}}}'\n```\n\nSee **[docs/INTEGRATIONS.md](docs/INTEGRATIONS.md)** for full configuration snippets for Claude Desktop, Claude.ai / Managed Agents, Cursor, VS Code, and Copilot Studio, plus self-hosting guides (Vercel, Docker).\n\nEnd-user documentation lives at **[docs.graphiteatlas.com](https://docs.graphiteatlas.com/connect-claude)**.\n\n## Environment Variables\n\n| Variable | Description | Default |\n|----------|-------------|---------|\n| `GRAPHITE_ACCESS_TOKEN` | JWT access token (required for stdio transport) | - |\n| `GRAPHITE_API_URL` | Graphite Atlas API base URL | `https://graphiteatlas.com` |\n| `MCP_TRANSPORT` | Transport mode: `stdio` or `http` | `stdio` |\n| `PORT` | Port for HTTP transport | `3000` |\n\n## Development\n\n```bash\nnpm run build        # Compile TypeScript\nnpm run watch        # Watch mode\nnpm run dev          # Dev mode with tsx\nnpm run lint         # ESLint\nnpm run typecheck    # TypeScript type check\nnpm test             # Run tests\n```\n\n## Troubleshooting\n\n### \"GRAPHITE_ACCESS_TOKEN environment variable is required\"\n\nYou need to provide a valid JWT access token. See [Quick Start](#quick-start).\n\n### \"Failed to connect to Graphite Atlas API\"\n\nCheck that:\n1. Your access token is valid (not expired)\n2. The API URL is correct\n3. You have network connectivity\n\n### \"API Error (401): Unauthorized\"\n\nYour access token may be expired. Generate a new one from Profile → API Apps.\n\n### Tools not appearing in Claude\n\n1. Check client logs for errors\n2. Verify your config file syntax is valid JSON\n3. Restart your client after config changes\n\n## Security\n\n- **Never commit** your access token to version control\n- **Never share** your access token publicly\n- **Rotate tokens** regularly\n- **Use minimal scopes** required for your use case\n\n## License\n\nMIT\n\n## Support\n\n- **Documentation**: https://docs.graphiteatlas.com\n- **Issues**: https://github.com/graphiteatlas/mcp/issues\n\n---\n\nBuilt with ❤️ by the Graphite Atlas team\n","readmeFilename":"README.md"}