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Enhanced git with workspace intelligence for entity-based organization","maintainers":[{"name":"marcelodevsquad","email":"marcelo@devsquad.email"}],"readme":"gut\n===\n\nGit Unified Tooling - Enhanced git with workspace intelligence for entity-based organization\n\n[![oclif](https://img.shields.io/badge/cli-oclif-brightgreen.svg)](https://oclif.io)\n[![Version](https://img.shields.io/npm/v/@devsquad/gut.svg)](https://npmjs.org/package/@devsquad/gut)\n[![Downloads/week](https://img.shields.io/npm/dw/@devsquad/gut.svg)](https://npmjs.org/package/@devsquad/gut)\n\n<!-- toc -->\n* [Untracked Entities](#untracked-entities)\n* [Commit all changes in focused entities only (default — unchanged)](#commit-all-changes-in-focused-entities-only-default--unchanged)\n* [Also commit in super-repo root + any unregistered nested repos](#also-commit-in-super-repo-root--any-unregistered-nested-repos)\n* [Usage](#usage)\n* [Commands](#commands)\n<!-- tocstop -->\n\n# Untracked Entities\n\n`gut status --all` surfaces dirty state for **any** `.git` repo inside the workspace tree, whether or not it's registered as an entity in `.gut/config.json`. This includes:\n\n- **The super-repo root itself** (the git repo containing `.gut/`)\n- **Nested repos** that exist on disk but have not been run through `gut entity add`\n\nDiscovery is always-on for reading (`gut status --all`). For writing, it's opt-in via a flag on `gut commit`:\n\n```sh\n# Commit all changes in focused entities only (default — unchanged)\ngut commit -a -m \"ship feature\"\n\n# Also commit in super-repo root + any unregistered nested repos\ngut commit -a -u -m \"ship feature and sync workspace\"\n```\n\nSafety guards on the `-u` path:\n\n- **Refuses to commit on** `main`, `master`, `live`, `prod`, `production`\n- **Skips** repos in an in-progress merge, rebase, or cherry-pick\n- **Skips** repos with detached `HEAD`\n- **Stages untracked files** (equivalent of `git add -A`) when `-a` is present, so newly-created files land in the commit\n\nEscape hatch: set `GUT_SKIP_DISCOVERY=1` to disable the walk entirely.\n\n# Usage\n<!-- usage -->\n```sh-session\n$ npm install -g @hyperdrive.bot/gut\n$ gut COMMAND\nrunning command...\n$ gut (--version)\n@hyperdrive.bot/gut/0.2.6-alpha.0 linux-x64 node-v22.22.3\n$ gut --help [COMMAND]\nUSAGE\n  $ gut COMMAND\n...\n```\n<!-- usagestop -->\n# Commands\n<!-- commands -->\n* [`gut add [PATH]`](#gut-add-path)\n* [`gut affected [ENTITY]`](#gut-affected-entity)\n* [`gut audit`](#gut-audit)\n* [`gut auth login`](#gut-auth-login)\n* [`gut auth logout`](#gut-auth-logout)\n* [`gut auth status`](#gut-auth-status)\n* [`gut back`](#gut-back)\n* [`gut checkout BRANCH`](#gut-checkout-branch)\n* [`gut claude init`](#gut-claude-init)\n* [`gut commit`](#gut-commit)\n* [`gut context`](#gut-context)\n* [`gut contexts`](#gut-contexts)\n* [`gut deps [ENTITY]`](#gut-deps-entity)\n* [`gut entity add NAME TYPE`](#gut-entity-add-name-type)\n* [`gut entity clone NAME`](#gut-entity-clone-name)\n* [`gut entity clone-all`](#gut-entity-clone-all)\n* [`gut entity list`](#gut-entity-list)\n* [`gut entity remove NAME`](#gut-entity-remove-name)\n* [`gut extract FOLDERPATH`](#gut-extract-folderpath)\n* [`gut focus [ENTITYNAME] [ENTITYTYPEORNAME]`](#gut-focus-entityname-entitytypeorname)\n* [`gut graph`](#gut-graph)\n* [`gut help [COMMAND]`](#gut-help-command)\n* [`gut init`](#gut-init)\n* [`gut insights`](#gut-insights)\n* [`gut patterns`](#gut-patterns)\n* [`gut pull`](#gut-pull)\n* [`gut push`](#gut-push)\n* [`gut quick-setup`](#gut-quick-setup)\n* [`gut recent`](#gut-recent)\n* [`gut related [ENTITY]`](#gut-related-entity)\n* [`gut repos`](#gut-repos)\n* [`gut stack`](#gut-stack)\n* [`gut status`](#gut-status)\n* [`gut sync`](#gut-sync)\n* [`gut ticket`](#gut-ticket)\n* [`gut ticket config`](#gut-ticket-config)\n* [`gut ticket focus TICKETID`](#gut-ticket-focus-ticketid)\n* [`gut ticket get TICKETID`](#gut-ticket-get-ticketid)\n* [`gut ticket hint [HINT] TICKETID`](#gut-ticket-hint-hint-ticketid)\n* [`gut ticket list`](#gut-ticket-list)\n* [`gut ticket sync TICKETID`](#gut-ticket-sync-ticketid)\n* [`gut ticket update TICKETID`](#gut-ticket-update-ticketid)\n* [`gut unfocus`](#gut-unfocus)\n* [`gut used-by [ENTITY]`](#gut-used-by-entity)\n* [`gut workspace ACTION`](#gut-workspace-action)\n* [`gut worktree create NAME`](#gut-worktree-create-name)\n* [`gut worktree gc`](#gut-worktree-gc)\n* [`gut worktree list`](#gut-worktree-list)\n* [`gut worktree prune`](#gut-worktree-prune)\n* [`gut worktree remove NAME`](#gut-worktree-remove-name)\n* [`gut worktree status [NAME]`](#gut-worktree-status-name)\n\n## `gut add [PATH]`\n\nStage changes in focused entities\n\n```\nUSAGE\n  $ gut add [PATH] [-A] [-p]\n\nARGUMENTS\n  PATH  [default: .] Path(s) to stage\n\nFLAGS\n  -A, --all    Stage all changes (equivalent to git add -A)\n  -p, --patch  Interactive staging\n\nDESCRIPTION\n  Stage changes in focused entities\n\nEXAMPLES\n  $ gut add\n\n  $ gut add .\n\n  $ gut add src/\n\n  $ gut add --all\n```\n\n## `gut affected [ENTITY]`\n\nDetect entities potentially affected by changes in current focus\n\n```\nUSAGE\n  $ gut affected [ENTITY] [--include-docs] [--include-tests] [-s <value>] [-v]\n\nARGUMENTS\n  ENTITY  Entity to analyze (uses current focus if not provided)\n\nFLAGS\n  -s, --since=<value>  [default: HEAD~1] Git reference to compare against\n  -v, --verbose        Show detailed analysis\n      --include-docs   Include documentation changes in analysis\n      --include-tests  Include test file changes in analysis\n\nDESCRIPTION\n  Detect entities potentially affected by changes in current focus\n\nEXAMPLES\n  $ gut affected\n\n  $ gut affected my-app\n\n  $ gut affected --since HEAD~5\n\n  $ gut affected --include-tests\n```\n\n## `gut audit`\n\nAccess and change audit across workspace\n\n```\nUSAGE\n  $ gut audit [-a] [--changes] [-c] [-e <value>] [--json] [-s]\n\nFLAGS\n  -a, --access          audit access patterns and permissions\n  -c, --compliance      focus on compliance audit\n  -e, --entity=<value>  audit specific entity\n  -s, --security        focus on security audit\n      --changes         audit recent changes and activity\n      --json            output as JSON\n\nDESCRIPTION\n  Access and change audit across workspace\n\nEXAMPLES\n  $ gut audit\n\n  $ gut audit --entity mindtools\n\n  $ gut audit --security\n\n  $ gut audit --compliance\n```\n\n## `gut auth login`\n\nAuthenticate with Gut using OAuth 2.0 PKCE flow\n\n```\nUSAGE\n  $ gut auth login [-d <value>] [-p <value>]\n\nFLAGS\n  -d, --domain=<value>  Tenant domain (e.g., acme.hyperdrive.bot)\n  -p, --port=<value>    [default: 8766] Local callback server port\n\nDESCRIPTION\n  Authenticate with Gut using OAuth 2.0 PKCE flow\n\nEXAMPLES\n  $ gut auth login\n\n  $ gut auth login --domain acme.hyperdrive.bot\n\n  $ gut auth login --port 9876\n```\n\n## `gut auth logout`\n\nRemove stored credentials and logout\n\n```\nUSAGE\n  $ gut auth logout\n\nDESCRIPTION\n  Remove stored credentials and logout\n\nEXAMPLES\n  $ gut auth logout\n```\n\n## `gut auth status`\n\nShow current authentication status\n\n```\nUSAGE\n  $ gut auth status [-v]\n\nFLAGS\n  -v, --verbose  Show detailed credential information\n\nDESCRIPTION\n  Show current authentication status\n\nEXAMPLES\n  $ gut auth status\n\n  $ gut auth status --verbose\n```\n\n## `gut back`\n\nNavigate back to the previous focus\n\n```\nUSAGE\n  $ gut back\n\nDESCRIPTION\n  Navigate back to the previous focus\n\nEXAMPLES\n  $ gut back\n```\n\n## `gut checkout BRANCH`\n\nCheckout or create branches in focused repositories\n\n```\nUSAGE\n  $ gut checkout BRANCH [-b] [-f] [--from <value>]\n\nARGUMENTS\n  BRANCH  Branch name to checkout or create\n\nFLAGS\n  -b, --create-branch  Create a new branch\n  -f, --force          Force checkout (discard local changes)\n      --from=<value>   Base branch to create from (use with -b)\n\nDESCRIPTION\n  Checkout or create branches in focused repositories\n\nEXAMPLES\n  $ gut checkout main\n\n  $ gut checkout -b feature/new-feature\n\n  $ gut checkout -b PRD-123 --from main\n```\n\n## `gut claude init`\n\nScaffold Claude Code configuration for gut\n\n```\nUSAGE\n  $ gut claude init [--dry-run] [-f]\n\nFLAGS\n  -f, --force    Overwrite existing gut section and command files\n      --dry-run  Preview changes without writing files\n\nDESCRIPTION\n  Scaffold Claude Code configuration for gut\n\nEXAMPLES\n  $ gut claude init\n\n  $ gut claude init --dry-run\n\n  $ gut claude init --force\n```\n\n## `gut commit`\n\nCommit changes in focused repositories\n\n```\nUSAGE\n  $ gut commit [-a] [--amend] [-u] [-m <value>]\n\nFLAGS\n  -a, --all                Stage all changes before committing\n  -m, --message=<value>    Commit message\n  -u, --include-untracked  Also commit in discovered .git repos not registered as entities (e.g. super-repo root, nested\n                           repos). Fails closed on main/master/live/prod.\n      --amend              Amend the previous commit\n\nDESCRIPTION\n  Commit changes in focused repositories\n\nEXAMPLES\n  $ gut commit -m \"Fix bug\"\n\n  $ gut commit --message \"Add feature\"\n\n  $ gut commit -a -u -m \"Ship WIP across workspace\"\n\n  $ gut commit\n```\n\n## `gut context`\n\nShow current focus context with entity details\n\n```\nUSAGE\n  $ gut context [--all] [--json]\n\nFLAGS\n  --all   Include all registered entities, not just focused ones (implies --json or adds to text output)\n  --json  Emit structured JSON for programmatic consumption (includes per-entity branch + hasUncommitted)\n\nDESCRIPTION\n  Show current focus context with entity details\n\nEXAMPLES\n  $ gut context\n\n  $ gut context --json\n\n  $ gut context --json --all\n```\n\n## `gut contexts`\n\nList all available contexts and focus history\n\n```\nUSAGE\n  $ gut contexts\n\nDESCRIPTION\n  List all available contexts and focus history\n\nEXAMPLES\n  $ gut contexts\n```\n\n## `gut deps [ENTITY]`\n\nShow dependencies of current focus or specified entity\n\n```\nUSAGE\n  $ gut deps [ENTITY]\n\nARGUMENTS\n  ENTITY  Entity name to analyze dependencies for\n\nDESCRIPTION\n  Show dependencies of current focus or specified entity\n\nEXAMPLES\n  $ gut deps\n\n  $ gut deps mindtools\n```\n\n## `gut entity add NAME TYPE`\n\nAdd a new entity to the workspace\n\n```\nUSAGE\n  $ gut entity add NAME TYPE -p <value> [-d <value>] [-r <value>] [--repo <value>]\n\nARGUMENTS\n  NAME  Entity name\n  TYPE  (client|prospect|company|initiative|system|delivery|module|service|tool) Entity type\n\nFLAGS\n  -d, --description=<value>  entity description\n  -p, --path=<value>         (required) path to entity\n  -r, --remote=<value>       git remote URL\n      --repo=<value>         repository name (for GitLab/GitHub)\n\nDESCRIPTION\n  Add a new entity to the workspace\n\nEXAMPLES\n  $ gut entity add delivery my-app --path ./apps/my-app\n\n  $ gut entity add module my-lib --path ./libs/my-lib --remote git@github.com:org/my-lib.git\n```\n\n## `gut entity clone NAME`\n\nClone a specific entity from its repository\n\n```\nUSAGE\n  $ gut entity clone NAME [-b <value>] [-d <value>] [-f] [-p <value>]\n\nARGUMENTS\n  NAME  Name of the entity to clone\n\nFLAGS\n  -b, --branch=<value>  Branch to clone (auto-detects workspace branch, falls back to master)\n  -d, --depth=<value>   Create a shallow clone with specified depth\n  -f, --force           Force clone even if directory exists\n  -p, --path=<value>    Custom path to clone to (relative to workspace)\n\nDESCRIPTION\n  Clone a specific entity from its repository\n\nEXAMPLES\n  $ gut entity clone my-app\n\n  $ gut entity clone my-app --branch develop\n\n  $ gut entity clone my-app --depth 1\n```\n\n## `gut entity clone-all`\n\nClone all configured entities from their repositories\n\n```\nUSAGE\n  $ gut entity clone-all [-b <value>] [-d <value>] [-f] [-p] [--skip-existing]\n\nFLAGS\n  -b, --branch=<value>  Branch to clone for all entities (auto-detects workspace branch, falls back to master)\n  -d, --depth=<value>   Create shallow clones with specified depth\n  -f, --force           Force clone even if directories exist\n  -p, --parallel        Clone entities in parallel\n      --skip-existing   Skip entities that already exist\n\nDESCRIPTION\n  Clone all configured entities from their repositories\n\nEXAMPLES\n  $ gut entity clone-all\n\n  $ gut entity clone-all --parallel\n\n  $ gut entity clone-all --branch develop\n\n  $ gut entity clone-all --skip-existing\n```\n\n## `gut entity list`\n\nList all configured entities\n\n```\nUSAGE\n  $ gut entity list [--json] [-t client|company|delivery|initiative|module|prospect|service|system|tool] [-v]\n\nFLAGS\n  -t, --type=<option>  filter by entity type\n                       <options: client|company|delivery|initiative|module|prospect|service|system|tool>\n  -v, --verbose        show detailed information\n      --json           output as JSON\n\nDESCRIPTION\n  List all configured entities\n\nEXAMPLES\n  $ gut entity list\n\n  $ gut entity list --type delivery\n\n  $ gut entity list --json\n```\n\n## `gut entity remove NAME`\n\nRemove an entity from the workspace configuration\n\n```\nUSAGE\n  $ gut entity remove NAME [-f]\n\nARGUMENTS\n  NAME  Entity name to remove\n\nFLAGS\n  -f, --force  skip confirmation prompt\n\nDESCRIPTION\n  Remove an entity from the workspace configuration\n\nEXAMPLES\n  $ gut entity remove my-app\n\n  $ gut entity remove my-app --force\n```\n\n## `gut extract FOLDERPATH`\n\nExtract a folder from the current repository into its own repository with full git history\n\n```\nUSAGE\n  $ gut extract FOLDERPATH [--dry-run] [-f] [--gitlab-token <value>] [--gitlab-url <value>] [--keep-temp]\n    [--project-path <value>] [--target-path <value>] [--temp-dir <value>]\n\nARGUMENTS\n  FOLDERPATH  Path to the folder to extract from the current repository\n\nFLAGS\n  -f, --force                 Force extraction even if target directory exists\n      --dry-run               Show what would be done without actually doing it\n      --gitlab-token=<value>  GitLab personal access token for creating projects\n      --gitlab-url=<value>    [default: https://gitlab.com] GitLab instance URL\n      --keep-temp             Keep temporary directory after extraction\n      --project-path=<value>  GitLab project path (group/project-name)\n      --target-path=<value>   [default: .] Target path in the new repository (default: same as source folder)\n      --temp-dir=<value>      Custom temporary directory path\n\nDESCRIPTION\n  Extract a folder from the current repository into its own repository with full git history\n\nEXAMPLES\n  $ gut extract packages/my-package --gitlab-token <token> --project-path my-group/my-package\n\n  $ gut extract src/components --gitlab-token <token> --project-path my-group/frontend/components --target-path .\n\n  $ gut extract libs/shared --gitlab-token <token> --project-path company/backend/libs/shared-utils\n```\n\n## `gut focus [ENTITYNAME] [ENTITYTYPEORNAME]`\n\nSet focus on one or more entities with optional type and mode\n\n```\nUSAGE\n  $ gut focus [ENTITYNAME...] [ENTITYTYPEORNAME...] [-c | -a | -m\n    delivery|strategy|audit|debug|research|proposal] [-d <value>] [-r]\n\nARGUMENTS\n  ENTITYNAME...        Entity name (when first arg is entity type)\n  ENTITYTYPEORNAME...  Entity type (client/prospect/company/initiative) or entity name\n\nFLAGS\n  -a, --add               add to current focus instead of replacing\n  -c, --clear             clear current focus\n  -d, --duration=<value>  focus duration (e.g., 2h, 90m)\n  -m, --mode=<option>     focus mode (delivery, strategy, audit, debug, research, proposal)\n                          <options: delivery|strategy|audit|debug|research|proposal>\n  -r, --remember          remember current focus before switching\n\nDESCRIPTION\n  Set focus on one or more entities with optional type and mode\n\nEXAMPLES\n  $ gut focus my-app\n\n  $ gut focus client mindtools\n\n  $ gut focus client mindtools --mode delivery\n\n  $ gut focus prospect jazida --mode research\n\n  $ gut focus my-app auth-service\n\n  $ gut focus --clear\n```\n\n## `gut graph`\n\nVisualize repository relationships and dependencies\n\n```\nUSAGE\n  $ gut graph [-d <value>] [--focus-only] [-f ascii|dot|json]\n\nFLAGS\n  -d, --depth=<value>    [default: 2] maximum depth of relationships to show\n  -f, --format=<option>  [default: ascii] output format\n                         <options: ascii|dot|json>\n      --focus-only       show only focused entities and their relationships\n\nDESCRIPTION\n  Visualize repository relationships and dependencies\n\nEXAMPLES\n  $ gut graph\n\n  $ gut graph --format ascii\n\n  $ gut graph --focus-only\n```\n\n## `gut help [COMMAND]`\n\nDisplay help for gut.\n\n```\nUSAGE\n  $ gut help [COMMAND...] [-n]\n\nARGUMENTS\n  COMMAND...  Command to show help for.\n\nFLAGS\n  -n, --nested-commands  Include all nested commands in the output.\n\nDESCRIPTION\n  Display help for gut.\n```\n\n_See code: [@oclif/plugin-help](https://github.com/oclif/plugin-help/blob/v6.2.32/src/commands/help.ts)_\n\n## `gut init`\n\nInitialize a gut workspace\n\n```\nUSAGE\n  $ gut init [-f] [-w <value>]\n\nFLAGS\n  -f, --force              force initialization even if already initialized\n  -w, --workspace=<value>  [default: /builds/JOkrpDV8M/0/dev_squad/repo/cli/gut] workspace root directory\n\nDESCRIPTION\n  Initialize a gut workspace\n\nEXAMPLES\n  $ gut init\n\n  $ gut init --force\n```\n\n## `gut insights`\n\nDisplay analytics and insights about the workspace\n\n```\nUSAGE\n  $ gut insights [-d] [-f table|json|summary] [--include-ignored]\n\nFLAGS\n  -d, --detailed         Show detailed statistics for each entity\n  -f, --format=<option>  [default: table] Output format\n                         <options: table|json|summary>\n      --include-ignored  Include gitignored files in statistics\n\nDESCRIPTION\n  Display analytics and insights about the workspace\n\nEXAMPLES\n  $ gut insights\n\n  $ gut insights --detailed\n\n  $ gut insights --format json\n```\n\n## `gut patterns`\n\nShow learned patterns for current context or entities\n\n```\nUSAGE\n  $ gut patterns [-e <value>] [--json] [-m delivery|strategy|audit|debug|research|proposal] [-t\n    client|prospect|company|initiative|system]\n\nFLAGS\n  -e, --entity=<value>  show patterns for specific entity\n  -m, --mode=<option>   show patterns for focus mode\n                        <options: delivery|strategy|audit|debug|research|proposal>\n  -t, --type=<option>   show patterns for entity type\n                        <options: client|prospect|company|initiative|system>\n      --json            output as JSON\n\nDESCRIPTION\n  Show learned patterns for current context or entities\n\nEXAMPLES\n  $ gut patterns\n\n  $ gut patterns --entity mindtools\n\n  $ gut patterns --type client\n\n  $ gut patterns --mode strategy\n```\n\n## `gut pull`\n\nPull changes from remote repositories\n\n```\nUSAGE\n  $ gut pull [--all] [--no-commit] [-r]\n\nFLAGS\n  -r, --rebase     Rebase instead of merge\n      --all        Fetch all remotes\n      --no-commit  Perform merge but do not commit\n\nDESCRIPTION\n  Pull changes from remote repositories\n\nEXAMPLES\n  $ gut pull\n\n  $ gut pull --rebase\n\n  $ gut pull --all\n```\n\n## `gut push`\n\nPush commits to remote repositories\n\n```\nUSAGE\n  $ gut push [-f] [-u] [--tags]\n\nFLAGS\n  -f, --force         Force push (use with caution)\n  -u, --set-upstream  Set upstream branch\n      --tags          Push tags\n\nDESCRIPTION\n  Push commits to remote repositories\n\nEXAMPLES\n  $ gut push\n\n  $ gut push --force\n\n  $ gut push --set-upstream\n```\n\n## `gut quick-setup`\n\nAutomated workspace setup based on common patterns\n\n```\nUSAGE\n  $ gut quick-setup [-a] [--clone-missing] [-p monorepo|microservices|fullstack|library] [--scan-depth <value>]\n\nFLAGS\n  -a, --auto                Auto-detect and configure without prompts\n  -p, --profile=<option>    Use specific setup profile\n                            <options: monorepo|microservices|fullstack|library>\n      --clone-missing       Clone missing repositories if found\n      --scan-depth=<value>  [default: 2] Directory depth to scan for entities\n\nDESCRIPTION\n  Automated workspace setup based on common patterns\n\nEXAMPLES\n  $ gut quick-setup\n\n  $ gut quick-setup --auto\n\n  $ gut quick-setup --profile monorepo\n\n  $ gut quick-setup --scan-depth 3\n```\n\n## `gut recent`\n\nShow recent focus history\n\n```\nUSAGE\n  $ gut recent [-l <value>]\n\nFLAGS\n  -l, --limit=<value>  [default: 5] Number of recent items to show\n\nDESCRIPTION\n  Show recent focus history\n\nEXAMPLES\n  $ gut recent\n\n  $ gut recent --limit 10\n```\n\n## `gut related [ENTITY]`\n\nFind entities related to a specific entity or current focus\n\n```\nUSAGE\n  $ gut related [ENTITY] [-d] [-t <value>] [--type all|dependencies|git|files]\n\nARGUMENTS\n  ENTITY  Entity name (uses current focus if not provided)\n\nFLAGS\n  -d, --detailed           Show detailed relation information\n  -t, --threshold=<value>  [default: 0.2] Minimum relation score (0-1)\n      --type=<option>      [default: all] Type of relation to check\n                           <options: all|dependencies|git|files>\n\nDESCRIPTION\n  Find entities related to a specific entity or current focus\n\nEXAMPLES\n  $ gut related my-app\n\n  $ gut related --threshold 0.3\n\n  $ gut related --type dependencies\n```\n\n## `gut repos`\n\nList accessible repositories in the workspace\n\n```\nUSAGE\n  $ gut repos [-a] [--json] [-s] [-t client|prospect|company|initiative|system|delivery|module|service|tool]\n\nFLAGS\n  -a, --accessible     show only accessible repositories (with valid paths)\n  -s, --status         show git status for each repository\n  -t, --type=<option>  filter by entity type\n                       <options: client|prospect|company|initiative|system|delivery|module|service|tool>\n      --json           output as JSON\n\nDESCRIPTION\n  List accessible repositories in the workspace\n\nEXAMPLES\n  $ gut repos\n\n  $ gut repos --type client\n\n  $ gut repos --status\n\n  $ gut repos --json\n```\n\n## `gut stack`\n\nShow and manage the focus stack\n\n```\nUSAGE\n  $ gut stack [-c]\n\nFLAGS\n  -c, --clear  clear the focus stack\n\nDESCRIPTION\n  Show and manage the focus stack\n\nEXAMPLES\n  $ gut stack\n\n  $ gut stack --clear\n```\n\n## `gut status`\n\nShow git status for focused entities\n\n```\nUSAGE\n  $ gut status [-a] [--json] [-v]\n\nFLAGS\n  -a, --all      show status for all entities\n  -v, --verbose  show detailed status\n      --json     output as JSON\n\nDESCRIPTION\n  Show git status for focused entities\n\nEXAMPLES\n  $ gut status\n\n  $ gut status --all\n\n  $ gut status --verbose\n```\n\n## `gut sync`\n\nSynchronize repositories with remote (fetch, merge/rebase, push)\n\n```\nUSAGE\n  $ gut sync [-f] [--no-push] [-r]\n\nFLAGS\n  -f, --force    Force push after sync\n  -r, --rebase   Use rebase instead of merge\n      --no-push  Skip the push step\n\nDESCRIPTION\n  Synchronize repositories with remote (fetch, merge/rebase, push)\n\nEXAMPLES\n  $ gut sync\n\n  $ gut sync --rebase\n\n  $ gut sync --force\n```\n\n## `gut ticket`\n\nManage gut tickets from the ADHB (Autonomous Development with Human Backstop) system\n\n```\nUSAGE\n  $ gut ticket [-h]\n\nFLAGS\n  -h, --help  Show CLI help.\n\nDESCRIPTION\n  Manage gut tickets from the ADHB (Autonomous Development with Human Backstop) system\n\nEXAMPLES\n  $ gut ticket list\n\n  $ gut ticket get PROJ-1234\n\n  $ gut ticket focus PROJ-1234\n\n  $ gut ticket hint PROJ-1234 \"Check the config file\"\n\n  $ gut ticket sync PROJ-1234\n\n  $ gut ticket update PROJ-1234 --status in_progress\n```\n\n## `gut ticket config`\n\nConfigure ticket source (JIRA, GitHub, etc.) for this tenant\n\n```\nUSAGE\n  $ gut ticket config [--secret-arn <value>] [-j] [--show] [--type jira|github|linear] [--url <value>]\n\nFLAGS\n  -j, --json                output as JSON\n      --secret-arn=<value>  AWS Secrets Manager ARN for credentials\n      --show                show current configuration\n      --type=<option>       source type\n                            <options: jira|github|linear>\n      --url=<value>         base URL (e.g., https://company.atlassian.net)\n\nDESCRIPTION\n  Configure ticket source (JIRA, GitHub, etc.) for this tenant\n\nEXAMPLES\n  $ gut ticket config --show\n\n  $ gut ticket config --type jira --url https://company.atlassian.net --secret-arn arn:aws:secretsmanager:...\n```\n\n## `gut ticket focus TICKETID`\n\nFocus on a ticket - downloads manifest and clones required entities\n\n```\nUSAGE\n  $ gut ticket focus TICKETID [-c] [-j] [-m] [-o <value>]\n\nARGUMENTS\n  TICKETID  ticket ID to focus on (e.g., PROJ-1234)\n\nFLAGS\n  -c, --checkout        checkout the ticket branch after cloning\n  -j, --json            output as JSON\n  -m, --manifest-only   only download manifest, do not clone entities\n  -o, --output=<value>  output directory for manifest (default: focus/)\n\nDESCRIPTION\n  Focus on a ticket - downloads manifest and clones required entities\n\nEXAMPLES\n  $ gut ticket focus PROJ-1234\n\n  $ gut ticket focus PROJ-1234 --checkout\n\n  $ gut ticket focus PROJ-1234 --manifest-only\n\n  $ gut ticket focus PROJ-1234 --output ./my-ticket\n```\n\n## `gut ticket get TICKETID`\n\nGet details for a gut ticket\n\n```\nUSAGE\n  $ gut ticket get TICKETID [-j]\n\nARGUMENTS\n  TICKETID  ticket ID (e.g., PROJ-1234)\n\nFLAGS\n  -j, --json  output as JSON\n\nDESCRIPTION\n  Get details for a gut ticket\n\nEXAMPLES\n  $ gut ticket get PROJ-1234\n\n  $ gut ticket get PROJ-1234 --json\n```\n\n## `gut ticket hint [HINT] TICKETID`\n\nAdd a hint to a blocked or needs_clarity ticket to help AI retry\n\n```\nUSAGE\n  $ gut ticket hint [HINT] TICKETID [-e] [-g <value>] [-j]\n\nARGUMENTS\n  HINT      hint text to add (if not provided, will prompt)\n  TICKETID  ticket ID to add hint to\n\nFLAGS\n  -e, --editor            open editor for hint text\n  -g, --given-by=<value>  [default: human] identifier of who is giving the hint\n  -j, --json              output as JSON\n\nDESCRIPTION\n  Add a hint to a blocked or needs_clarity ticket to help AI retry\n\nEXAMPLES\n  $ gut ticket hint PROJ-1234 \"The auth token is in the Authorization header\"\n\n  $ gut ticket hint PROJ-1234 --editor\n\n  $ gut ticket hint PROJ-1234\n```\n\n## `gut ticket list`\n\nList gut tickets\n\n```\nUSAGE\n  $ gut ticket list [-j] [-l <value>] [-s\n    enriching|needs_clarity|ready|in_progress|testing|in_review|blocked|ready_to_merge|deploying|validating|done]\n\nFLAGS\n  -j, --json             output as JSON\n  -l, --limit=<value>    [default: 20] maximum number of tickets to show\n  -s, --status=<option>  filter by status (enriching, needs_clarity, ready, in_progress, testing, in_review, blocked,\n                         ready_to_merge, deploying, validating, done)\n                         <options: enriching|needs_clarity|ready|in_progress|testing|in_review|blocked|ready_to_merge|de\n                         ploying|validating|done>\n\nDESCRIPTION\n  List gut tickets\n\nEXAMPLES\n  $ gut ticket list\n\n  $ gut ticket list --status ready\n\n  $ gut ticket list --status blocked --limit 10\n\n  $ gut ticket list --json\n```\n\n## `gut ticket sync TICKETID`\n\nSync ticket state with external source (JIRA, GitHub, etc.)\n\n```\nUSAGE\n  $ gut ticket sync TICKETID [-d push|pull] [-j] [--no-enrich]\n\nARGUMENTS\n  TICKETID  ticket ID to sync (e.g., PROJ-1234)\n\nFLAGS\n  -d, --direction=<option>  [default: push] sync direction (push: gut -> source, pull: source -> gut)\n                            <options: push|pull>\n  -j, --json                output as JSON\n      --no-enrich           skip enrichment queue when pulling new tickets\n\nDESCRIPTION\n  Sync ticket state with external source (JIRA, GitHub, etc.)\n\n  For pull direction:\n  - If ticket exists in gut: updates from source\n  - If ticket doesn't exist: creates it and queues enrichment\n\n  For push direction:\n  - Updates source system with gut ticket state\n\nEXAMPLES\n  $ gut ticket sync PROJ-1234\n\n  $ gut ticket sync PROJ-1234 --direction push\n\n  $ gut ticket sync PROJ-1234 --direction pull\n\n  $ gut ticket sync PROJ-1234 --direction pull --no-enrich\n```\n\n## `gut ticket update TICKETID`\n\nUpdate a ticket status or confidence\n\n```\nUSAGE\n  $ gut ticket update TICKETID [-c <value>] [-j] [-p\n    enrichment|planning|implementation|testing|review|merge|deployment|validation] [-s\n    enriching|needs_clarity|ready|in_progress|testing|in_review|blocked|ready_to_merge|deploying|validating|done]\n\nARGUMENTS\n  TICKETID  ticket ID to update\n\nFLAGS\n  -c, --confidence=<value>  new confidence score (0-100)\n  -j, --json                output as JSON\n  -p, --phase=<option>      new workflow phase\n                            <options: enrichment|planning|implementation|testing|review|merge|deployment|validation>\n  -s, --status=<option>     new ticket status (enriching, needs_clarity, ready, in_progress, testing, in_review,\n                            blocked, ready_to_merge, deploying, validating, done)\n                            <options: enriching|needs_clarity|ready|in_progress|testing|in_review|blocked|ready_to_merge\n                            |deploying|validating|done>\n\nDESCRIPTION\n  Update a ticket status or confidence\n\nEXAMPLES\n  $ gut ticket update PROJ-1234 --status in_progress\n\n  $ gut ticket update PROJ-1234 --status testing --confidence 85\n\n  $ gut ticket update PROJ-1234 --phase implementation\n```\n\n## `gut unfocus`\n\nClear the current focus\n\n```\nUSAGE\n  $ gut unfocus\n\nDESCRIPTION\n  Clear the current focus\n\nEXAMPLES\n  $ gut unfocus\n```\n\n## `gut used-by [ENTITY]`\n\nShow what entities depend on current focus or specified entity\n\n```\nUSAGE\n  $ gut used-by [ENTITY]\n\nARGUMENTS\n  ENTITY  Entity name to analyze usage for\n\nDESCRIPTION\n  Show what entities depend on current focus or specified entity\n\nEXAMPLES\n  $ gut used-by\n\n  $ gut used-by api\n```\n\n## `gut workspace ACTION`\n\nManage workspace structure and entity metadata\n\n```\nUSAGE\n  $ gut workspace ACTION [-t client|prospect|company|initiative|system] [-f]\n\nARGUMENTS\n  ACTION  (init|structure|generate-metadata) Action to perform (init, structure, generate-metadata)\n\nFLAGS\n  -f, --force                 force overwrite existing files\n  -t, --entity-type=<option>  entity type for metadata generation\n                              <options: client|prospect|company|initiative|system>\n\nDESCRIPTION\n  Manage workspace structure and entity metadata\n\nEXAMPLES\n  $ gut workspace init\n\n  $ gut workspace structure\n\n  $ gut workspace generate-metadata\n```\n\n## `gut worktree create NAME`\n\nCreate mirrored worktrees for super-repo and focused entities\n\n```\nUSAGE\n  $ gut worktree create NAME [--base-dir <value>] [--entity <value>...] [--from <value>] [--install]\n\nARGUMENTS\n  NAME  Branch name for the worktree\n\nFLAGS\n  --base-dir=<value>   [default: /root/.local/share/gut/worktrees] Root directory for worktrees (default:\n                       ~/.local/share/gut/worktrees, override via GUT_WORKTREE_DIR env var; explicit --base-dir wins)\n  --entity=<value>...  Entity to include, optionally pinned to a branch via \"name:branch\". Repeatable. Overrides current\n                       focus when provided.\n  --from=<value>       Base branch to create from (defaults to current branch)\n  --install            Run pnpm install after creation\n\nDESCRIPTION\n  Create mirrored worktrees for super-repo and focused entities\n\nEXAMPLES\n  $ gut worktree create workflow/deploy-batch\n\n  $ gut worktree create workflow/deploy-batch --from master --install\n\n  $ gut worktree create feature/story-42 --base-dir /home/user/worktrees\n\n  $ gut worktree create seo-lake --entity serverless-api:feature/seo-lake --entity sign\n\n  GUT_WORKTREE_DIR=/tmp/gut-worktrees gut worktree create feature/ci-run\n```\n\n## `gut worktree gc`\n\nRemove worktrees older than a given duration (garbage collection)\n\n```\nUSAGE\n  $ gut worktree gc -o <value> [-n] [-f]\n\nFLAGS\n  -f, --force               Remove even worktrees with uncommitted changes\n  -n, --dry-run             List candidates without removing anything\n  -o, --older-than=<value>  (required) Duration threshold (e.g. '7d', '24h', '30m', '90s')\n\nDESCRIPTION\n  Remove worktrees older than a given duration (garbage collection)\n\nEXAMPLES\n  $ gut worktree gc --older-than 7d\n\n  $ gut worktree gc --older-than 14d --force\n\n  $ gut worktree gc --older-than 7d --dry-run\n```\n\n## `gut worktree list`\n\nList all active worktrees with metadata and staleness detection\n\n```\nUSAGE\n  $ gut worktree list\n\nDESCRIPTION\n  List all active worktrees with metadata and staleness detection\n\nEXAMPLES\n  $ gut worktree list\n```\n\n## `gut worktree prune`\n\nRemove worktree records whose paths no longer exist on disk\n\n```\nUSAGE\n  $ gut worktree prune\n\nDESCRIPTION\n  Remove worktree records whose paths no longer exist on disk\n\nEXAMPLES\n  $ gut worktree prune\n```\n\n## `gut worktree remove NAME`\n\nRemove a worktree and all entity worktrees\n\n```\nUSAGE\n  $ gut worktree remove NAME [-f]\n\nARGUMENTS\n  NAME  Worktree name to remove\n\nFLAGS\n  -f, --force  Remove even with uncommitted changes\n\nDESCRIPTION\n  Remove a worktree and all entity worktrees\n\nEXAMPLES\n  $ gut worktree remove workflow/batch\n\n  $ gut worktree remove workflow/batch --force\n```\n\n## `gut worktree status [NAME]`\n\nShow per-entity git status for worktrees\n\n```\nUSAGE\n  $ gut worktree status [NAME]\n\nARGUMENTS\n  NAME  Worktree name (shows all if omitted)\n\nDESCRIPTION\n  Show per-entity git status for worktrees\n\nEXAMPLES\n  $ gut worktree status\n\n  $ gut worktree status workflow/deploy-batch\n```\n<!-- commandsstop -->\n","readmeFilename":"README.md"}