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files and images related to DICOM file format.","maintainers":[{"name":"paulhax","email":"gladsomebeast@gmail.com"},{"name":"thewtex","email":"matt@mmmccormick.com"}],"readme":"# @itk-wasm/dicom\n\n[![npm version](https://badge.fury.io/js/@itk-wasm%2Fdicom.svg)](https://www.npmjs.com/package/@itk-wasm/dicom)\n\n> Read files and images related to DICOM file format.\n\n[💻 **Live API Demo** ✨](https://insightsoftwareconsortium.github.io/ITK-Wasm/dicom/ts/app/\n ':include :type=iframe width=100% height=800px')\n\n[🕮 **Documentation** 📚](https://insightsoftwareconsortium.github.io/ITK-Wasm/dicom/ts/docs/)\n\n## Installation\n\n```sh\nnpm install @itk-wasm/dicom\n```\n\n## Usage\n\n### Browser interface\n\nImport:\n\n```js\nimport {\n  applyPresentationStateToImage,\n  readDicomEncapsulatedPdf,\n  structuredReportToHtml,\n  structuredReportToText,\n  readDicomTags,\n  readImageDicomFileSeries,\n  setPipelinesBaseUrl,\n  getPipelinesBaseUrl,\n} from \"@itk-wasm/dicom\"\n```\n\n#### applyPresentationStateToImage\n\n*Apply a presentation state to a given DICOM image and render output as bitmap, or dicom file.*\n\n```ts\nasync function applyPresentationStateToImage(\n  imageIn: File | BinaryFile,\n  presentationStateFile: File | BinaryFile,\n  options: ApplyPresentationStateToImageOptions = {}\n) : Promise<ApplyPresentationStateToImageResult>\n```\n\n|        Parameter        |         Type        | Description                           |\n| :---------------------: | :-----------------: | :------------------------------------ |\n|        `imageIn`        | *File | BinaryFile* | Input DICOM file                      |\n| `presentationStateFile` | *File | BinaryFile* | Process using presentation state file |\n\n**`ApplyPresentationStateToImageOptions` interface:**\n\n|           Property          |             Type            | Description                                                                                                                                           |\n| :-------------------------: | :-------------------------: | :---------------------------------------------------------------------------------------------------------------------------------------------------- |\n|        `colorOutput`        |          *boolean*          | output image as RGB (default: false)                                                                                                                  |\n|         `configFile`        |           *string*          | filename: string. Process using settings from configuration file                                                                                      |\n|           `frame`           |           *number*          | frame: integer. Process using image frame f (default: 1)                                                                                              |\n| `noPresentationStateOutput` |          *boolean*          | Do not get presentation state information in text stream.                                                                                             |\n|       `noBitmapOutput`      |          *boolean*          | Do not get resulting image as bitmap output stream.                                                                                                   |\n|         `webWorker`         | *null or Worker or boolean* | WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker. |\n|           `noCopy`          |          *boolean*          | When SharedArrayBuffer's are not available, do not copy inputs.                                                                                       |\n\n**`ApplyPresentationStateToImageResult` interface:**\n\n|           Property           |       Type       | Description                     |\n| :--------------------------: | :--------------: | :------------------------------ |\n| `presentationStateOutStream` | *JsonCompatible* | Output overlay information      |\n|         `outputImage`        |      *Image*     | Output image                    |\n|          `webWorker`         |     *Worker*     | WebWorker used for computation. |\n\n#### readDicomEncapsulatedPdf\n\n*Extract PDF file from DICOM encapsulated PDF.*\n\n```ts\nasync function readDicomEncapsulatedPdf(\n  dicomFile: File | BinaryFile,\n  options: ReadDicomEncapsulatedPdfOptions = {}\n) : Promise<ReadDicomEncapsulatedPdfResult>\n```\n\n|  Parameter  |         Type        | Description      |\n| :---------: | :-----------------: | :--------------- |\n| `dicomFile` | *File | BinaryFile* | Input DICOM file |\n\n**`ReadDicomEncapsulatedPdfOptions` interface:**\n\n|       Property      |             Type            | Description                                                                                                                                           |\n| :-----------------: | :-------------------------: | :---------------------------------------------------------------------------------------------------------------------------------------------------- |\n|    `readFileOnly`   |          *boolean*          | read file format only                                                                                                                                 |\n|    `readDataset`    |          *boolean*          | read data set without file meta information                                                                                                           |\n|    `readXferAuto`   |          *boolean*          | use TS recognition (default)                                                                                                                          |\n|   `readXferDetect`  |          *boolean*          | ignore TS specified in the file meta header                                                                                                           |\n|   `readXferLittle`  |          *boolean*          | read with explicit VR little endian TS                                                                                                                |\n|    `readXferBig`    |          *boolean*          | read with explicit VR big endian TS                                                                                                                   |\n|  `readXferImplicit` |          *boolean*          | read with implicit VR little endian TS                                                                                                                |\n|  `acceptOddLength`  |          *boolean*          | accept odd length attributes (default)                                                                                                                |\n|  `assumeEvenLength` |          *boolean*          | assume real length is one byte larger                                                                                                                 |\n|    `enableCp246`    |          *boolean*          | read undefined len UN as implicit VR (default)                                                                                                        |\n|    `disableCp246`   |          *boolean*          | read undefined len UN as explicit VR                                                                                                                  |\n|      `retainUn`     |          *boolean*          | retain elements as UN (default)                                                                                                                       |\n|     `convertUn`     |          *boolean*          | convert to real VR if known                                                                                                                           |\n|  `enableCorrection` |          *boolean*          | enable automatic data correction (default)                                                                                                            |\n| `disableCorrection` |          *boolean*          | disable automatic data correction                                                                                                                     |\n|     `webWorker`     | *null or Worker or boolean* | WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker. |\n|       `noCopy`      |          *boolean*          | When SharedArrayBuffer's are not available, do not copy inputs.                                                                                       |\n\n**`ReadDicomEncapsulatedPdfResult` interface:**\n\n|      Property     |     Type     | Description                     |\n| :---------------: | :----------: | :------------------------------ |\n| `pdfBinaryOutput` | *Uint8Array* | Output pdf file                 |\n|    `webWorker`    |   *Worker*   | WebWorker used for computation. |\n\n#### structuredReportToHtml\n\n*Render DICOM SR file and data set to HTML/XHTML*\n\n```ts\nasync function structuredReportToHtml(\n  dicomFile: File | BinaryFile,\n  options: StructuredReportToHtmlOptions = {}\n) : Promise<StructuredReportToHtmlResult>\n```\n\n|  Parameter  |         Type        | Description      |\n| :---------: | :-----------------: | :--------------- |\n| `dicomFile` | *File | BinaryFile* | Input DICOM file |\n\n**`StructuredReportToHtmlOptions` interface:**\n\n|        Property       |             Type            | Description                                                                                                                                           |\n| :-------------------: | :-------------------------: | :---------------------------------------------------------------------------------------------------------------------------------------------------- |\n|     `readFileOnly`    |          *boolean*          | read file format only                                                                                                                                 |\n|     `readDataset`     |          *boolean*          | read data set without file meta information                                                                                                           |\n|     `readXferAuto`    |          *boolean*          | use TS recognition (default)                                                                                                                          |\n|    `readXferDetect`   |          *boolean*          | ignore TS specified in the file meta header                                                                                                           |\n|    `readXferLittle`   |          *boolean*          | read with explicit VR little endian TS                                                                                                                |\n|     `readXferBig`     |          *boolean*          | read with explicit VR big endian TS                                                                                                                   |\n|   `readXferImplicit`  |          *boolean*          | read with implicit VR little endian TS                                                                                                                |\n|  `processingDetails`  |          *boolean*          | show currently processed content item                                                                                                                 |\n| `unknownRelationship` |          *boolean*          | accept unknown/missing relationship type                                                                                                              |\n|   `invalidItemValue`  |          *boolean*          | accept invalid content item value\n(e.g. violation of VR or VM definition)                                                                             |\n|  `ignoreConstraints`  |          *boolean*          | ignore relationship content constraints                                                                                                               |\n|   `ignoreItemErrors`  |          *boolean*          | do not abort on content item errors, just warn\n(e.g. missing value type specific attributes)                                                          |\n|   `skipInvalidItems`  |          *boolean*          | skip invalid content items (incl. sub-tree)                                                                                                           |\n|   `disableVrChecker`  |          *boolean*          | disable check for VR-conformant string values                                                                                                         |\n|    `charsetRequire`   |          *boolean*          | require declaration of ext. charset (default)                                                                                                         |\n|    `charsetAssume`    |           *string*          | [c]harset: string, assume charset c if no extended charset declared                                                                                   |\n|   `charsetCheckAll`   |          *boolean*          | check all data elements with string values\n(default: only PN, LO, LT, SH, ST, UC and UT)                                                              |\n|    `convertToUtf8`    |          *boolean*          | convert all element values that are affected\nby Specific Character Set (0008,0005) to UTF-8                                                           |\n|      `urlPrefix`      |           *string*          | URL: string. Append specificed URL prefix to hyperlinks of referenced composite objects in the document.                                              |\n|        `html32`       |          *boolean*          | use only HTML version 3.2 compatible features                                                                                                         |\n|        `html40`       |          *boolean*          | allow all HTML version 4.01 features (default)                                                                                                        |\n|       `xhtml11`       |          *boolean*          | comply with XHTML version 1.1 specification                                                                                                           |\n|   `addDocumentType`   |          *boolean*          | add reference to SGML document type definition                                                                                                        |\n|     `cssReference`    |           *string*          | URL: string. Add reference to specified CSS to document                                                                                               |\n|       `cssFile`       |  *string | File | TextFile* | [f]ilename: string. Embed content of specified CSS into document                                                                                      |\n|     `expandInline`    |          *boolean*          | expand short content items inline (default)                                                                                                           |\n|  `neverExpandInline`  |          *boolean*          | never expand content items inline                                                                                                                     |\n|  `alwaysExpandInline` |          *boolean*          | always expand content items inline                                                                                                                    |\n|    `renderFullData`   |          *boolean*          | render full data of content items                                                                                                                     |\n|  `sectionTitleInline` |          *boolean*          | render section titles inline, not separately                                                                                                          |\n|  `documentTypeTitle`  |          *boolean*          | use document type as document title (default)                                                                                                         |\n|   `patientInfoTitle`  |          *boolean*          | use patient information as document title                                                                                                             |\n|   `noDocumentHeader`  |          *boolean*          | do not render general document information                                                                                                            |\n|  `renderInlineCodes`  |          *boolean*          | render codes in continuous text blocks                                                                                                                |\n|   `conceptNameCodes`  |          *boolean*          | render code of concept names                                                                                                                          |\n|   `numericUnitCodes`  |          *boolean*          | render code of numeric measurement units                                                                                                              |\n|    `codeValueUnit`    |          *boolean*          | use code value as measurement unit (default)                                                                                                          |\n|   `codeMeaningUnit`   |          *boolean*          | use code meaning as measurement unit                                                                                                                  |\n|    `renderAllCodes`   |          *boolean*          | render all codes (implies +Ci, +Cn and +Cu)                                                                                                           |\n|  `codeDetailsTooltip` |          *boolean*          | render code details as a tooltip (implies +Cc)                                                                                                        |\n|      `webWorker`      | *null or Worker or boolean* | WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker. |\n|        `noCopy`       |          *boolean*          | When SharedArrayBuffer's are not available, do not copy inputs.                                                                                       |\n\n**`StructuredReportToHtmlResult` interface:**\n\n|   Property   |   Type   | Description                     |\n| :----------: | :------: | :------------------------------ |\n| `outputText` | *string* | Output text file                |\n|  `webWorker` | *Worker* | WebWorker used for computation. |\n\n#### structuredReportToText\n\n*Read a DICOM structured report file and generate a plain text representation*\n\n```ts\nasync function structuredReportToText(\n  dicomFile: File | BinaryFile,\n  options: StructuredReportToTextOptions = {}\n) : Promise<StructuredReportToTextResult>\n```\n\n|  Parameter  |         Type        | Description      |\n| :---------: | :-----------------: | :--------------- |\n| `dicomFile` | *File | BinaryFile* | Input DICOM file |\n\n**`StructuredReportToTextOptions` interface:**\n\n|        Property       |             Type            | Description                                                                                                                                           |\n| :-------------------: | :-------------------------: | :---------------------------------------------------------------------------------------------------------------------------------------------------- |\n| `unknownRelationship` |          *boolean*          | Accept unknown relationship type                                                                                                                      |\n|   `invalidItemValue`  |          *boolean*          | Accept invalid content item value                                                                                                                     |\n|  `ignoreConstraints`  |          *boolean*          | Ignore relationship constraints                                                                                                                       |\n|   `ignoreItemErrors`  |          *boolean*          | Ignore content item errors                                                                                                                            |\n|   `skipInvalidItems`  |          *boolean*          | Skip invalid content items                                                                                                                            |\n|   `noDocumentHeader`  |          *boolean*          | Print no document header                                                                                                                              |\n|  `numberNestedItems`  |          *boolean*          | Number nested items                                                                                                                                   |\n|  `shortenLongValues`  |          *boolean*          | Shorten long item values                                                                                                                              |\n|   `printInstanceUid`  |          *boolean*          | Print SOP Instance UID                                                                                                                                |\n|  `printSopclassShort` |          *boolean*          | Print short SOP class name                                                                                                                            |\n|  `printSopclassLong`  |          *boolean*          | Print SOP class name                                                                                                                                  |\n|   `printSopclassUid`  |          *boolean*          | Print long SOP class name                                                                                                                             |\n|    `printAllCodes`    |          *boolean*          | Print all codes                                                                                                                                       |\n|  `printInvalidCodes`  |          *boolean*          | Print invalid codes                                                                                                                                   |\n|   `printTemplateId`   |          *boolean*          | Print template identification                                                                                                                         |\n|   `indicateEnhanced`  |          *boolean*          | Indicate enhanced encoding mode                                                                                                                       |\n|      `printColor`     |          *boolean*          | Use ANSI escape codes                                                                                                                                 |\n|      `webWorker`      | *null or Worker or boolean* | WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker. |\n|        `noCopy`       |          *boolean*          | When SharedArrayBuffer's are not available, do not copy inputs.                                                                                       |\n\n**`StructuredReportToTextResult` interface:**\n\n|   Property   |   Type   | Description                     |\n| :----------: | :------: | :------------------------------ |\n| `outputText` | *string* | Output text file                |\n|  `webWorker` | *Worker* | WebWorker used for computation. |\n\n#### readDicomTags\n\n*Read the tags from a DICOM file*\n\n```ts\nasync function readDicomTags(\n  dicomFile: File | BinaryFile,\n  options: ReadDicomTagsOptions = {}\n) : Promise<ReadDicomTagsResult>\n```\n\n|  Parameter  |         Type        | Description       |\n| :---------: | :-----------------: | :---------------- |\n| `dicomFile` | *File | BinaryFile* | Input DICOM file. |\n\n**`ReadDicomTagsOptions` interface:**\n\n|   Property   |             Type            | Description                                                                                                                                           |\n| :----------: | :-------------------------: | :---------------------------------------------------------------------------------------------------------------------------------------------------- |\n| `tagsToRead` |       *JsonCompatible*      | A JSON object with a \"tags\" array of the tags to read. If not provided, all tags are read. Example tag: \"0008|103e\".                                  |\n|  `webWorker` | *null or Worker or boolean* | WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker. |\n|   `noCopy`   |          *boolean*          | When SharedArrayBuffer's are not available, do not copy inputs.                                                                                       |\n\n**`ReadDicomTagsResult` interface:**\n\n|   Property  |       Type       | Description                                                                                                |\n| :---------: | :--------------: | :--------------------------------------------------------------------------------------------------------- |\n|    `tags`   | *JsonCompatible* | Output tags in the file. JSON object an array of [tag, value] arrays. Values are encoded as UTF-8 strings. |\n| `webWorker` |     *Worker*     | WebWorker used for computation.                                                                            |\n\n#### readImageDicomFileSeries\n\n*Read a DICOM image series and return the associated image volume*\n\n```ts\nasync function readImageDicomFileSeries(\n  options: ReadImageDicomFileSeriesOptions = { inputImages: [] as BinaryFile[] | File[] | string[], }\n) : Promise<ReadImageDicomFileSeriesResult>\n```\n\n| Parameter | Type | Description |\n| :-------: | :--: | :---------- |\n\n**`ReadImageDicomFileSeriesOptions` interface:**\n\n|       Property       |                Type                | Description                                                                                                                                           |\n| :------------------: | :--------------------------------: | :---------------------------------------------------------------------------------------------------------------------------------------------------- |\n|     `inputImages`    | *string[] | File[] | BinaryFile[]* | File names in the series                                                                                                                              |\n| `singleSortedSeries` |              *boolean*             | The input files are a single sorted series                                                                                                            |\n|      `webWorker`     |     *null or Worker or boolean*    | WebWorker for computation. Set to null to create a new worker. Or, pass an existing worker. Or, set to `false` to run in the current thread / worker. |\n|       `noCopy`       |              *boolean*             | When SharedArrayBuffer's are not available, do not copy inputs.                                                                                       |\n\n**`ReadImageDicomFileSeriesResult` interface:**\n\n|      Property     |       Type       | Description                     |\n| :---------------: | :--------------: | :------------------------------ |\n|   `outputImage`   |      *Image*     | Output image volume             |\n| `sortedFilenames` | *JsonCompatible* | Output sorted filenames         |\n|    `webWorker`    |     *Worker*     | WebWorker used for computation. |\n\n#### setPipelinesBaseUrl\n\n*Set base URL for WebAssembly assets when vendored.*\n\n```ts\nfunction setPipelinesBaseUrl(\n  baseUrl: string | URL\n) : void\n```\n\n#### getPipelinesBaseUrl\n\n*Get base URL for WebAssembly assets when vendored.*\n\n```ts\nfunction getPipelinesBaseUrl() : string | URL\n```\n\n\n### Node interface\n\nImport:\n\n```js\nimport {\n  applyPresentationStateToImageNode,\n  readDicomEncapsulatedPdfNode,\n  structuredReportToHtmlNode,\n  structuredReportToTextNode,\n  readDicomTagsNode,\n  readImageDicomFileSeriesNode,\n} from \"@itk-wasm/dicom\"\n```\n\n#### applyPresentationStateToImageNode\n\n*Apply a presentation state to a given DICOM image and render output as bitmap, or dicom file.*\n\n```ts\nasync function applyPresentationStateToImageNode(\n  imageIn: string,\n  presentationStateFile: string,\n  options: ApplyPresentationStateToImageNodeOptions = {}\n) : Promise<ApplyPresentationStateToImageNodeResult>\n```\n\n|        Parameter        |   Type   | Description                           |\n| :---------------------: | :------: | :------------------------------------ |\n|        `imageIn`        | *string* | Input DICOM file                      |\n| `presentationStateFile` | *string* | Process using presentation state file |\n\n**`ApplyPresentationStateToImageNodeOptions` interface:**\n\n|           Property          |    Type   | Description                                                      |\n| :-------------------------: | :-------: | :--------------------------------------------------------------- |\n|        `colorOutput`        | *boolean* | output image as RGB (default: false)                             |\n|         `configFile`        |  *string* | filename: string. Process using settings from configuration file |\n|           `frame`           |  *number* | frame: integer. Process using image frame f (default: 1)         |\n| `noPresentationStateOutput` | *boolean* | Do not get presentation state information in text stream.        |\n|       `noBitmapOutput`      | *boolean* | Do not get resulting image as bitmap output stream.              |\n\n**`ApplyPresentationStateToImageNodeResult` interface:**\n\n|           Property           |       Type       | Description                |\n| :--------------------------: | :--------------: | :------------------------- |\n| `presentationStateOutStream` | *JsonCompatible* | Output overlay information |\n|         `outputImage`        |      *Image*     | Output image               |\n\n#### readDicomEncapsulatedPdfNode\n\n*Extract PDF file from DICOM encapsulated PDF.*\n\n```ts\nasync function readDicomEncapsulatedPdfNode(\n  dicomFile: string,\n  options: ReadDicomEncapsulatedPdfNodeOptions = {}\n) : Promise<ReadDicomEncapsulatedPdfNodeResult>\n```\n\n|  Parameter  |   Type   | Description      |\n| :---------: | :------: | :--------------- |\n| `dicomFile` | *string* | Input DICOM file |\n\n**`ReadDicomEncapsulatedPdfNodeOptions` interface:**\n\n|       Property      |    Type   | Description                                    |\n| :-----------------: | :-------: | :--------------------------------------------- |\n|    `readFileOnly`   | *boolean* | read file format only                          |\n|    `readDataset`    | *boolean* | read data set without file meta information    |\n|    `readXferAuto`   | *boolean* | use TS recognition (default)                   |\n|   `readXferDetect`  | *boolean* | ignore TS specified in the file meta header    |\n|   `readXferLittle`  | *boolean* | read with explicit VR little endian TS         |\n|    `readXferBig`    | *boolean* | read with explicit VR big endian TS            |\n|  `readXferImplicit` | *boolean* | read with implicit VR little endian TS         |\n|  `acceptOddLength`  | *boolean* | accept odd length attributes (default)         |\n|  `assumeEvenLength` | *boolean* | assume real length is one byte larger          |\n|    `enableCp246`    | *boolean* | read undefined len UN as implicit VR (default) |\n|    `disableCp246`   | *boolean* | read undefined len UN as explicit VR           |\n|      `retainUn`     | *boolean* | retain elements as UN (default)                |\n|     `convertUn`     | *boolean* | convert to real VR if known                    |\n|  `enableCorrection` | *boolean* | enable automatic data correction (default)     |\n| `disableCorrection` | *boolean* | disable automatic data correction              |\n\n**`ReadDicomEncapsulatedPdfNodeResult` interface:**\n\n|      Property     |     Type     | Description     |\n| :---------------: | :----------: | :-------------- |\n| `pdfBinaryOutput` | *Uint8Array* | Output pdf file |\n\n#### structuredReportToHtmlNode\n\n*Render DICOM SR file and data set to HTML/XHTML*\n\n```ts\nasync function structuredReportToHtmlNode(\n  dicomFile: string,\n  options: StructuredReportToHtmlNodeOptions = {}\n) : Promise<StructuredReportToHtmlNodeResult>\n```\n\n|  Parameter  |   Type   | Description      |\n| :---------: | :------: | :--------------- |\n| `dicomFile` | *string* | Input DICOM file |\n\n**`StructuredReportToHtmlNodeOptions` interface:**\n\n|        Property       |            Type            | Description                                                                                              |\n| :-------------------: | :------------------------: | :------------------------------------------------------------------------------------------------------- |\n|     `readFileOnly`    |          *boolean*         | read file format only                                                                                    |\n|     `readDataset`     |          *boolean*         | read data set without file meta information                                                              |\n|     `readXferAuto`    |          *boolean*         | use TS recognition (default)                                                                             |\n|    `readXferDetect`   |          *boolean*         | ignore TS specified in the file meta header                                                              |\n|    `readXferLittle`   |          *boolean*         | read with explicit VR little endian TS                                                                   |\n|     `readXferBig`     |          *boolean*         | read with explicit VR big endian TS                                                                      |\n|   `readXferImplicit`  |          *boolean*         | read with implicit VR little endian TS                                                                   |\n|  `processingDetails`  |          *boolean*         | show currently processed content item                                                                    |\n| `unknownRelationship` |          *boolean*         | accept unknown/missing relationship type                                                                 |\n|   `invalidItemValue`  |          *boolean*         | accept invalid content item value\n(e.g. violation of VR or VM definition)                                |\n|  `ignoreConstraints`  |          *boolean*         | ignore relationship content constraints                                                                  |\n|   `ignoreItemErrors`  |          *boolean*         | do not abort on content item errors, just warn\n(e.g. missing value type specific attributes)             |\n|   `skipInvalidItems`  |          *boolean*         | skip invalid content items (incl. sub-tree)                                                              |\n|   `disableVrChecker`  |          *boolean*         | disable check for VR-conformant string values                                                            |\n|    `charsetRequire`   |          *boolean*         | require declaration of ext. charset (default)                                                            |\n|    `charsetAssume`    |          *string*          | [c]harset: string, assume charset c if no extended charset declared                                      |\n|   `charsetCheckAll`   |          *boolean*         | check all data elements with string values\n(default: only PN, LO, LT, SH, ST, UC and UT)                 |\n|    `convertToUtf8`    |          *boolean*         | convert all element values that are affected\nby Specific Character Set (0008,0005) to UTF-8              |\n|      `urlPrefix`      |          *string*          | URL: string. Append specificed URL prefix to hyperlinks of referenced composite objects in the document. |\n|        `html32`       |          *boolean*         | use only HTML version 3.2 compatible features                                                            |\n|        `html40`       |          *boolean*         | allow all HTML version 4.01 features (default)                                                           |\n|       `xhtml11`       |          *boolean*         | comply with XHTML version 1.1 specification                                                              |\n|   `addDocumentType`   |          *boolean*         | add reference to SGML document type definition                                                           |\n|     `cssReference`    |          *string*          | URL: string. Add reference to specified CSS to document                                                  |\n|       `cssFile`       | *string | File | TextFile* | [f]ilename: string. Embed content of specified CSS into document                                         |\n|     `expandInline`    |          *boolean*         | expand short content items inline (default)                                                              |\n|  `neverExpandInline`  |          *boolean*         | never expand content items inline                                                                        |\n|  `alwaysExpandInline` |          *boolean*         | always expand content items inline                                                                       |\n|    `renderFullData`   |          *boolean*         | render full data of content items                                                                        |\n|  `sectionTitleInline` |          *boolean*         | render section titles inline, not separately                                                             |\n|  `documentTypeTitle`  |          *boolean*         | use document type as document title (default)                                                            |\n|   `patientInfoTitle`  |          *boolean*         | use patient information as document title                                                                |\n|   `noDocumentHeader`  |          *boolean*         | do not render general document information                                                               |\n|  `renderInlineCodes`  |          *boolean*         | render codes in continuous text blocks                                                                   |\n|   `conceptNameCodes`  |          *boolean*         | render code of concept names                                                                             |\n|   `numericUnitCodes`  |          *boolean*         | render code of numeric measurement units                                                                 |\n|    `codeValueUnit`    |          *boolean*         | use code value as measurement unit (default)                                                             |\n|   `codeMeaningUnit`   |          *boolean*         | use code meaning as measurement unit                                                                     |\n|    `renderAllCodes`   |          *boolean*         | render all codes (implies +Ci, +Cn and +Cu)                                                              |\n|  `codeDetailsTooltip` |          *boolean*         | render code details as a tooltip (implies +Cc)                                                           |\n\n**`StructuredReportToHtmlNodeResult` interface:**\n\n|   Property   |   Type   | Description      |\n| :----------: | :------: | :--------------- |\n| `outputText` | *string* | Output text file |\n\n#### structuredReportToTextNode\n\n*Read a DICOM structured report file and generate a plain text representation*\n\n```ts\nasync function structuredReportToTextNode(\n  dicomFile: string,\n  options: StructuredReportToTextNodeOptions = {}\n) : Promise<StructuredReportToTextNodeResult>\n```\n\n|  Parameter  |   Type   | Description      |\n| :---------: | :------: | :--------------- |\n| `dicomFile` | *string* | Input DICOM file |\n\n**`StructuredReportToTextNodeOptions` interface:**\n\n|        Property       |    Type   | Description                       |\n| :-------------------: | :-------: | :-------------------------------- |\n| `unknownRelationship` | *boolean* | Accept unknown relationship type  |\n|   `invalidItemValue`  | *boolean* | Accept invalid content item value |\n|  `ignoreConstraints`  | *boolean* | Ignore relationship constraints   |\n|   `ignoreItemErrors`  | *boolean* | Ignore content item errors        |\n|   `skipInvalidItems`  | *boolean* | Skip invalid content items        |\n|   `noDocumentHeader`  | *boolean* | Print no document header          |\n|  `numberNestedItems`  | *boolean* | Number nested items               |\n|  `shortenLongValues`  | *boolean* | Shorten long item values          |\n|   `printInstanceUid`  | *boolean* | Print SOP Instance UID            |\n|  `printSopclassShort` | *boolean* | Print short SOP class name        |\n|  `printSopclassLong`  | *boolean* | Print SOP class name              |\n|   `printSopclassUid`  | *boolean* | Print long SOP class name         |\n|    `printAllCodes`    | *boolean* | Print all codes                   |\n|  `printInvalidCodes`  | *boolean* | Print invalid codes               |\n|   `printTemplateId`   | *boolean* | Print template identification     |\n|   `indicateEnhanced`  | *boolean* | Indicate enhanced encoding mode   |\n|      `printColor`     | *boolean* | Use ANSI escape codes             |\n\n**`StructuredReportToTextNodeResult` interface:**\n\n|   Property   |   Type   | Description      |\n| :----------: | :------: | :--------------- |\n| `outputText` | *string* | Output text file |\n\n#### readDicomTagsNode\n\n*Read the tags from a DICOM file*\n\n```ts\nasync function readDicomTagsNode(\n  dicomFile: string,\n  options: ReadDicomTagsNodeOptions = {}\n) : Promise<ReadDicomTagsNodeResult>\n```\n\n|  Parameter  |   Type   | Description       |\n| :---------: | :------: | :---------------- |\n| `dicomFile` | *string* | Input DICOM file. |\n\n**`ReadDicomTagsNodeOptions` interface:**\n\n|   Property   |       Type       | Description                                                                                                          |\n| :----------: | :--------------: | :------------------------------------------------------------------------------------------------------------------- |\n| `tagsToRead` | *JsonCompatible* | A JSON object with a \"tags\" array of the tags to read. If not provided, all tags are read. Example tag: \"0008|103e\". |\n\n**`ReadDicomTagsNodeResult` interface:**\n\n| Property |       Type       | Description                                                                                                |\n| :------: | :--------------: | :--------------------------------------------------------------------------------------------------------- |\n|  `tags`  | *JsonCompatible* | Output tags in the file. JSON object an array of [tag, value] arrays. Values are encoded as UTF-8 strings. |\n\n#### readImageDicomFileSeriesNode\n\n*Read a DICOM image series and return the associated image volume*\n\n```ts\nasync function readImageDicomFileSeriesNode(\n  options: ReadImageDicomFileSeriesNodeOptions = { inputImages: [] as string[], }\n) : Promise<ReadImageDicomFileSeriesNodeResult>\n```\n\n| Parameter | Type | Description |\n| :-------: | :--: | :---------- |\n\n**`ReadImageDicomFileSeriesNodeOptions` interface:**\n\n|       Property       |                Type                | Description                                |\n| :------------------: | :--------------------------------: | :----------------------------------------- |\n|     `inputImages`    | *string[] | File[] | BinaryFile[]* | File names in the series                   |\n| `singleSortedSeries` |              *boolean*             | The input files are a single sorted series |\n\n**`ReadImageDicomFileSeriesNodeResult` interface:**\n\n|      Property     |       Type       | Description             |\n| :---------------: | :--------------: | :---------------------- |\n|   `outputImage`   |      *Image*     | Output image volume     |\n| `sortedFilenames` | *JsonCompatible* | Output sorted filenames |\n\n## Acknowledgments\n\n`@itk-wasm/dicom` stands on the shoulders of the following giants:\n\n- [ITK](https://docs.itk.org/)\n- [GDCM](https://sourceforge.net/projects/gdcm/)\n- [DCMTK](https://dicom.offis.de/dcmtk.php.en)\n- [DCMQI](https://github.com/QIICR/dcmqi)\n- [Plastimatch](https://plastimatch.org/)\n\nThe versions of libraries are the following:\n\n- [ITK](https://github.com/InsightSoftwareConsortium/ITK-Wasm/blob/main/itk_wasm_env.bash#L18-L19)\n- [GDCM (vendored in\n  ITK)](https://github.com/InsightSoftwareConsortium/ITK-Wasm/blob/main/itk_wasm_env.bash#L18-L19)\n- [DCMTK](https://github.com/InsightSoftwareConsortium/ITK-Wasm/blob/main/itk_wasm_env.bash#L15-L16)\n- [DCMQI](https://github.com/InsightSoftwareConsortium/ITK-Wasm/blob/main/packages/dicom/dcmtk/CMakeLists.txt#L16-L17)\n\nDevelopment of this library was supported by [NCI Imaging Data Commons](https://imaging.datacommons.cancer.gov/), and has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Task Order No. HHSN26110071 under Contract No. HHSN261201500003l.\n","readmeFilename":"README.md"}