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Taelman","email":"rubensworks@gmail.com"},"license":"MIT","homepage":"https://github.com/rubensworks/jbr.js#readme","keywords":["hook","Docker","jbr","benchmarking"],"repository":{"url":"git+https://github.com/rubensworks/jbr.js.git","type":"git","directory":"packages/hook-sparql-endpoint-comunica"},"description":"Comunica SPARQL endpoint hook handler for JBR","maintainers":[{"name":"rubensworks","email":"rubensworks@gmail.com"}],"readme":"# JBR Hook - SPARQL Endpoint Comunica\n\n[![Build status](https://github.com/rubensworks/jbr.js/workflows/CI/badge.svg)](https://github.com/rubensworks/jbr.js/actions?query=workflow%3ACI)\n[![Coverage Status](https://coveralls.io/repos/github/rubensworks/jbr.js/badge.svg?branch=master)](https://coveralls.io/github/rubensworks/jbr.js?branch=master)\n[![npm version](https://badge.fury.io/js/%40jbr-hook%2Fsparql-endpoint-comunica.svg)](https://www.npmjs.com/package/@jbr-hoopk/sparql-endpoint-comunica)\n\nA [jbr](https://github.com/rubensworks/jbr.js/tree/master/packages/jbr) hook type for a [Comunica](https://github.com/comunica/comunica)-based SPARQL endpoint.\n\n## Requirements\n\n* [Node.js](https://nodejs.org/en/) _(1.12 or higher)_\n* [Docker](https://www.docker.com/) _(required for starting a Comunica SPARQL endpoint inside a Docker container)_\n* An existing [jbr](https://github.com/rubensworks/jbr.js/tree/master/packages/jbr) experiment that requires a SPARQL endpoint hook.\n\n## Configure an experiment hook\n\nIf an experiment requires a hook for a SPARQL endpoint,\nthen you can install this Comunica-based SPARQL endpoint as follows.\n\n```bash\n$ jbr set-hook someHookSparqlEndpoint sparql-endpoint-comunica\n```\n\n## Output\n\nThe following output is generated after an experiment with this hook has run.\n\n`output/stats-sparql-endpoint-comunica.csv`: Per second of the experiment: CPU percentage, memory usage (bytes), memory percentage, received bytes, transmitted bytes.\n```csv\ncpu_percentage,memory,memory_percentage,received,transmitted\n9.915362228116711,10489856,0.5024267940030527,488,0\n9.863725050505051,17354752,0.8312308965993495,648,0\n9.64850952141058,19116032,0.915589944401502,738,0\n9.345685076142132,23072768,1.105103526208198,738,0\n10.029959365079364,26759168,1.2816689750964243,738,0\n10.25411566137566,30363648,1.45431074734269,738,0\n```\n\n`output/logs/sparql-endpoint-comunica.txt`: Logs of the Comunica SPARQL endpoint.\n\n## Configuration\n\nWhen installing this hook, your configuration file (`jbr-experiment.json`) will contain the following:\n\n```text\n...\n  \"someHookSparqlEndpoint\": {\n    \"@id\": \"urn:jrb:bb:hookSparqlEndpoint\",\n    \"@type\": \"HookSparqlEndpointComunica\",\n    \"dockerfileClient\": \"input/dockerfiles/Dockerfile-client\",\n    \"resourceConstraints\": {\n      \"@type\": \"DockerResourceConstraints\",\n      \"cpu_percentage\": 90\n    },\n    \"configClient\": \"input/config-client.json\",\n    \"additionalBinds\": [ ],\n    \"clientPort\": 3001,\n    \"clientLogLevel\": \"info\",\n    \"queryTimeout\": 300,\n    \"maxMemory\": 8192\n  }\n...\n```\n\nAny config changes require re-running the prepare step.\n\nMore background information on these config options can be found on https://comunica.dev/.\n\n### Configuration fields\n\n* `dockerfileClient`: Path to the Dockerfile of Comunica.\n* `resourceConstraints`: Resource constraints for the Docker container.\n* `configClient`: Path to the configuration file of a Comunica engine.\n* `clientPort`: HTTP port on which the SPARQL endpoint will be exposed.\n* `clientLogLevel`: Logging level for Comunica engine.\n* `queryTimeout`: Timeout in seconds for a single SPARQL query execution.\n* `maxMemory`: Maximum amount of Memory for the Comunica Node.js process in MB.\n* `additionalBinds`: The Local file bindings to the client dockerfile.\n\n\n## Querying local files\n\nBy default, the hook handler sparql-endpoint-comunica expects the dataset to be served through http. \nIf you want to use a local file as source for the comunica endpoint you can bind a local dataset to comunica docker container.\nTo do so, follow these steps:\n\nFirst, use [lerna-docker](https://github.com/rubensworks/lerna-docker) to create a docker image of [engines/query-sparql-file](https://github.com/comunica/comunica/tree/master/engines/query-sparql-file). For this use the dockerfile in [engines/query-sparql](https://github.com/comunica/comunica/blob/master/engines/query-sparql/Dockerfile).\nThen generate an experiment and add the sparql-endpoint-comunica hook like explained above.\nIn the generated experiment, you should change the client dockerfile:\n\n```text\nmy-experiment/\n  input/\n    dockerfiles\n      Dockerfile-client\n```\n\nChange the default docker image to your newly created docker image. For example:\n```\nFROM comunica/query-sparql:v2.5.0 -> FROM comunica/query-sparql-file:v2.5.0\n```\n\nFurthermore, change the config-client.json and context-client.json\n```text\nmy-experiment/\n  input/\n    config-client.json\n    context-client.json\n```\nIn the config-client.json change the import of \n```\nccqs:config/config-default.json\n```\nto\n```\nccqs:config/config-file.json\n``` \nThen in the context-client.json set sources to\n```\n\"sources\": [ \"/tmp/dataset.nt\" ]\n``` \nThis path should point to where you want your dataset to be available in the Docker image.\n\nFinally, we want to bind our dataset to the sources path we've specified above. This is done in the jbr-experiment.json\n```\n  my-experiment/\n    jbr-experiment.json\n```\nBy default the entry for the hookSparqlEndpoint should look like this\n```\n  \"hookSparqlEndpoint\": {\n    \"@id\": \"urn:jbr:testerdetest:hookSparqlEndpoint\",\n    \"@type\": \"HookSparqlEndpointComunica\",\n    \"dockerfileClient\": \"input/dockerfiles/Dockerfile-client\",\n    \"resourceConstraints\": {\n      \"@type\": \"StaticDockerResourceConstraints\",\n      \"cpu_percentage\": 100\n    },\n    \"configClient\": \"input/config-client.json\",\n    \"contextClient\": \"input/context-client.json\",\n    \"additionalBinds\": [],\n    \"clientPort\": 3001,\n    \"clientLogLevel\": \"info\",\n    \"queryTimeout\": 300,\n    \"maxMemory\": 8192\n  }\n```\nIn this, we set \n```\n  \"additionalBinds\": [\"/generated/dataset.nt:/tmp/dataset.nt\"] \n```\nThe first part before the ```:``` denotes where our dataset is found locally, while the second part shows where the dataset will be available in the Docker image.\n\n## License\n\njbr.js is written by [Ruben Taelman](http://www.rubensworks.net/).\n\nThis code is copyrighted by [Ghent University – imec](http://idlab.ugent.be/)\nand released under the [MIT license](http://opensource.org/licenses/MIT).\n","readmeFilename":"README.md"}