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transformer for Manuscripts applications","maintainers":[{"name":"maci","email":"mpiipari@atypon.com"}],"readme":"# @manuscripts/manuscript-transform\n\nProseMirror transformer for Manuscripts applications.\n\nIt provides a way to import/export [Manuscript JSON Schema](https://gitlab.com/mpapp-public/manuscripts-json-schema) formatted data from and to other formats such as (JATS XML, STS XML, HTML, [ProseMirror Model](https://prosemirror.net/docs/guide/#doc))\n\n# Components\n\n**Decoder**: converts Manuscript JSON Schema to ProseMirror Model. \n\n**Encoder**: converts ProseMirror Model to Manuscript JSON Schema. \n\n**ManuscriptNode**: a Manuscript definition of a ProseMirror Node which hold a ProseMirror fragment containing zero or more child nodes, for example a section node or a figure node.\n\n**ManuscriptFragment**:  a Manuscript definition of a ProseMirror Fragment represents a node's collection of child nodes.\n\n**ManuscriptMark**:  a Manuscript definition of a ProseMirror mark which is a piece of information that can be attached to a node, such as it being emphasized, in code font, or a link\n\n**JATSExporter**: converts Manuscript JSON Schema to JATS XML via ProseMirror Model. \n\n**JATSImporter** converts JATS XML to Manuscript JSON Schema via ProseMirror Model. \n\n# Usage\n\n### Manuscript JSON Schema to ProseMirror Model \n\n```typescript\nimport { Decoder, ContainedModel } from '@manuscripts/manuscript-transform'\n\n\n// Data from Manuscript JSON Schema file\nconst data: ContainedModel[]\nconst modelMap = new Map<string, ContainedModel>(\n  data.map((model) => [model._id, model])\n)\nconst decoder = new Decoder(modelMap)\n// manuscriptID =>  The ID for the manuscript data can be found in MPManuscript Model\nconst manuscriptNode = decoder.createArticleNode(manuscriptID)\n```    \n\n### ProseMirror Model to Manuscript JSON Schema\n\n```typescript\nimport { encode } from '@manuscripts/manuscript-transform'\n\nconst manuscriptNode: ManuscriptNode\nconst result = encode(manuscriptNode)\n```\n\n### Manuscript JSON Schema to JATS XML\n\n```typescript\nimport {\n  ContainedModel,\n  JATSExporter,\n  JATSExporterOptions,\n  ManuscriptFragment,\n} from '@manuscripts/manuscript-transform'\n\n// Data from Manuscript JSON Schema file\nconst data: ContainedModel[]\nconst modelMap = new Map<string, ContainedModel>(\n  data.map((model) => [model._id, model])\n)\nconst decoder = new Decoder(modelMap)\n// manuscriptID =>  The ID for the manuscript data can be found in MPManuscript Model\nconst manuscriptNode = decoder.createArticleNode(manuscriptID)\n\nconst options: JATSExporterOptions   \nconst result = new JATSExporter().serializeToJATS(manuscriptNode.content, modelMap, manuscriptID, options)\n```\n\n#### JATSExporterOptions\n\n**version**: JATS output version, supported versions ('1.1' , '1.2d1' , '1.2')\\\n**doi**: DOI of the article\\\n**id**: article id\\\n**frontMatterOnly**: to export article front only\n\n### JATS XML to Manuscript JSON Schema\n\n```typescript\nimport { parseJATSArticle } from '@manuscripts/manuscript-transform'\n\n// JATS XML document\nconst doc: Document\nconst result = await parseJATSArticle(doc)\n```\n\n## ProseMirror Schema \n\nAs mentioned in ProseMirror [documentation](https://prosemirror.net/docs/ref/#model.Document_Schema) the schema defined as \n>Every ProseMirror document conforms to a schema, which describes the set of nodes and marks that it is made out of, \nalong with the relations between those, such as which node may occur as a child node of which other nodes. \n\nYou can find the definition of the schema in **/schema** folder where it is constructed form a set of nodes and marks\n\n### ProseMirror Node \n\n>This class represents a node in the tree that makes up a ProseMirror document. So a document is an instance of Node, with children that are also instances of Node.\n\nPlease check [Node class](https://prosemirror.net/docs/ref/#model.Node) documentation to know more about its attributes and methods\n\nLet's take **figure** node as an example\n\n```typescript\nexport const figure: NodeSpec = {\n    content: 'figcaption* paragraph* attribution*',\n   // ...\n   // ...\n```\n\nThe content attribute here describe the children of this node, a figure can have captions, paragraphs and attributions and each \nof these nodes can also have their own content \n\n```typescript\n export const figure: NodeSpec = {\n // ...\n // ...\n  attrs: {\n    id: { default: '' },\n    originalURL: { default: undefined },\n ```   \n     \nattrs describe the attributes that can this figure node have for example an ID or a URL        \n  \n```typescript\ntoDOM: (node) => {}\n```\n\n this function defines the default way of the figure node to be serialized to DOM/HTML, the return type is a DOM node or an array structure that describes one, with an optional number zero (“hole”) in it to indicate where the node's content should be inserted.\n\n\n### ProseMirror Mark\n\n>mark is a piece of information that can be attached to a node, such as it being emphasized, in code font, or a link. It has a type and optionally a set of attributes that provide further information (such as the target of the link). \n>Marks are created through a Schema, which controls which types exist and which attributes they have.\n\nPlease check [Mark class](https://prosemirror.net/docs/ref/#model.Mark) documentation to know more about its attributes and methods\n\nLet's take italic mark as an example \n\n```typescript\nexport const italic: MarkSpec = {\n  parseDOM: [{ tag: 'i' }, { tag: 'em' }, { style: 'font-style=italic' }],\n  toDOM: () => ['i'],\n}\n```\n\nparseDOM here define how to deserialize this mark from DOM, for example an **em** tag will be parsed to this italic mark \n\n## Deserialize JATS to ProseMirror \n\nin **jats-body-dom-parser.ts** file you can find the rules of how the parser can deserialize JATS XML tags into ProseMirror nodes\n\nfor example to map **sec** JATS tag to ProseMirror section node \n\n```typescript\n      {\n        tag: 'sec',\n        node: 'section',\n        getAttrs: (node) => {\n          const element = node as HTMLElement\n    \n          return {\n            id: element.getAttribute('id'),\n            category: chooseSectionCategory(element),\n          }\n        },\n      },\n```\n\ngetAttrs function here extract the attributes of the **sec** tag and map them into section node attributes\n\n## Serialize ProseMirror nodes to JATS XML\n\nin **jats-exporter.ts** file you can find the serialization rules defined in **createSerializer** method\n\nsection node to sec tag\n\n```typescript\nsection: (node) => {\n  const attrs: { [key: string]: string } = {\n    id: normalizeID(node.attrs.id),\n  }\n\n  if (node.attrs.category) {\n    attrs['sec-type'] = chooseSecType(node.attrs.category)\n  }\n\n  return ['sec', attrs, 0]\n}\n```\n","readmeFilename":"README.md"}