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Fast startup with incremental updates  \n🔄 **Multi-Repository Support** - Manage multiple projects simultaneously  \n⚡ **Real-time Updates** - File watcher integration for live indexing  \n\n## Installation\n\n### From npm (Recommended)\n\n```bash\nnpm install -g @opichi/helios-mcp\n```\n\n### From Source\n\n```bash\ngit clone https://github.com/opichi/helios-mcp.git\ncd helios-mcp\nnpm install\nnpm run build\nnpm link\n```\n\n## Configuration\n\n### Claude Desktop\n\nAdd to your Claude Desktop configuration file (`~/Library/Application Support/Claude/claude_desktop_config.json` on macOS):\n\n```json\n{\n  \"mcpServers\": {\n    \"opichi-helios\": {\n      \"command\": \"opichi-helios\",\n      \"args\": []\n    }\n  }\n}\n```\n\n### Windsurf/Other MCP Clients\n\nAdd to your MCP configuration:\n\n```json\n{\n  \"mcpServers\": {\n    \"opichi-helios\": {\n      \"command\": \"npx\",\n      \"args\": [\"@opichi/helios-mcp\"]\n    }\n  }\n}\n```\n\n## Usage\n\nOnce configured, the following tools will be available in your AI assistant:\n\n### `semantic_search`\nSearch for code using natural language descriptions:\n\n```\nFind functions that handle user authentication\nSearch for database connection logic\nLook for error handling patterns\n```\n\n### `analyze_dependencies`\nAnalyze file dependencies and relationships:\n\n```\nAnalyze dependencies for src/auth/login.ts\nShow me what depends on this utility function\n```\n\n### `trace_imports`\nTrack where symbols are defined and used:\n\n```\nTrace all usages of the UserService class\nFind where the validateEmail function is called\n```\n\n### `get_project_structure`\nUnderstand your project's organization:\n\n```\nShow me the structure of this project\nAnalyze the architecture of the frontend module\n```\n\n### `index_project`\nIndex projects for analysis:\n\n```\nIndex the current project\nForce re-index of /path/to/project\n```\n\n## How It Works\n\n### Persistent Storage\nHelios stores all analysis data in `~/.opichi-helios/` with the following structure:\n\n```\n~/.opichi-helios/\n├── indices/\n│   ├── project-{hash}/\n│   │   ├── metadata.db      # File metadata and symbols\n│   │   ├── embeddings.db    # Vector embeddings\n│   │   └── ast-cache/       # Parsed AST data\n├── config.json\n└── logs/\n```\n\n### Incremental Updates\n- **File Checksums**: Only reprocess changed files\n- **Real-time Watching**: Automatic updates when files change\n- **Smart Caching**: Fast startup after initial indexing\n\n### Multi-Language Support\n- TypeScript/JavaScript\n- Python\n- Rust\n- Go\n- Java\n- C/C++\n\n## Architecture\n\n```\n┌─────────────────┐    ┌─────────────────┐    ┌─────────────────┐\n│   AI Assistant  │◄──►│  Helios MCP     │◄──►│  Local Storage  │\n│  (Claude, etc.) │    │     Server      │    │   (~/.opichi)   │\n└─────────────────┘    └─────────────────┘    └─────────────────┘\n                              │\n                              ▼\n                       ┌─────────────────┐\n                       │   Your Code     │\n                       │   Repositories  │\n                       └─────────────────┘\n```\n\n### Core Components\n\n- **HeliosCore**: Central orchestrator for multi-repository management\n- **StorageManager**: SQLite-based persistent storage\n- **IndexManager**: Code parsing and indexing with file watching\n- **CodeAnalyzer**: AST parsing and symbol extraction\n- **EmbeddingGenerator**: Local semantic embeddings using transformers\n- **MCP Tools**: Five specialized tools for different analysis needs\n\n## Performance\n\n- **Cold Start**: ~100ms to load existing indices\n- **Incremental Updates**: Only changed files are reprocessed\n- **Memory Efficient**: Streams data from disk, doesn't load everything\n- **Local Processing**: No API calls, everything runs on your machine\n\n## Privacy\n\n- **100% Local**: All code analysis happens on your machine\n- **No Cloud Dependencies**: No external API calls or data transmission\n- **Secure Storage**: All data stored locally in your home directory\n\n## Development\n\n### Building\n\n```bash\nnpm run build\n```\n\n### Development Mode\n\n```bash\nnpm run dev\n```\n\n### Testing\n\n```bash\nnpm test\n```\n\n## Troubleshooting\n\n### Common Issues\n\n**\"Command not found: opichi-helios\"**\n- Ensure the package is installed globally: `npm install -g @opichi/helios-mcp`\n- Check that npm global bin directory is in your PATH\n\n**\"Failed to load embedding model\"**\n- The first run downloads the embedding model (~25MB)\n- Ensure you have internet connection for the initial download\n- Subsequent runs work offline\n\n**\"Project indexing is slow\"**\n- Large projects (>1000 files) may take a few minutes on first index\n- Subsequent updates are much faster (incremental)\n- Consider excluding build directories in `.gitignore`\n\n### Debug Mode\n\nSet environment variable for verbose logging:\n\n```bash\nHELIOS_DEBUG=true opichi-helios\n```\n\n### Reset Index\n\nTo completely reset and re-index:\n\n```bash\nrm -rf ~/.opichi-helios/indices\n```\n\n## Contributing\n\n1. Fork the repository\n2. Create a feature branch\n3. Make your changes\n4. Add tests if applicable\n5. Submit a pull request\n\n## License\n\nMIT License - see [LICENSE](LICENSE) file for details.\n\n## Changelog\n\nSee [CHANGELOG.md](CHANGELOG.md) for version history and changes.\n\n---\n\n**Built by Opichi LLC** - Empowering developers with intelligent code analysis.\n","readmeFilename":"README.md"}