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tps://github.com/OriginTrail/dkg.git","type":"git","directory":"packages/storage"},"description":"Triple store abstraction layer for DKG V10. Provides a unified API over multiple RDF storage backends with named graph management and private content storage.","maintainers":[{"name":"branarakic","email":"branimir.rakic@origin-trail.com"},{"name":"jurij89","email":"jurij.skornik@origin-trail.com"}],"readme":"# @origintrail-official/dkg-storage\n\nTriple store abstraction layer for DKG V10. Provides a unified API over multiple RDF storage backends with named graph management and private content storage.\n\n## Features\n\n- **Backend adapters** — pluggable triple store implementations:\n  - `OxigraphStore` — embedded WASM/native store, no external dependencies\n  - `OxigraphWorkerStore` — worker-thread variant; keeps the daemon event loop free, with a per-read-operation timeout (see below)\n  - `BlazegraphStore` — connects to a running Blazegraph SPARQL endpoint\n  - `SparqlHttpStore` — generic adapter for any SPARQL 1.1 compliant endpoint\n- **Graph manager** — named graph lifecycle (create, drop, list) with contextGraph-scoped data and metadata graphs\n- **Private content store** — encrypted triple storage for private KA triples, separate from the public graph\n- **Custom adapters** — `registerTripleStoreAdapter()` to plug in any storage backend\n\n## Usage\n\n```typescript\nimport { createTripleStore, GraphManager } from '@origintrail-official/dkg-storage';\n\n// In-memory store\nconst memStore = await createTripleStore({ backend: 'oxigraph' });\n\n// Persistent store (requires a path)\nconst store = await createTripleStore({\n  backend: 'oxigraph-persistent',\n  options: { path: './data' },\n});\n\nconst graphs = new GraphManager(store);\n\nawait store.insert(quads);\nconst result = await store.query('SELECT * WHERE { ?s ?p ?o } LIMIT 10');\n```\n\n## Oxigraph persistence contract\n\nThis contract applies to `OxigraphStore` when it is created with a persistence\npath (`oxigraph-persistent`) and to `oxigraph-worker` when that worker is given\na persistence path. Plain `oxigraph`, and a worker without a persistence path,\nare in-memory stores and provide no restart durability.\n\n### Mutation and flush semantics\n\n- Mutations update the in-memory store immediately and schedule a full N-Quads\n  snapshot after a 50 ms debounce. A successful mutation does not by itself\n  mean the snapshot has reached disk.\n- Callers that require an operation to survive an immediate restart must await\n  `flush()`. It cancels a pending debounce, waits for an in-flight snapshot,\n  and then writes the current state.\n- A snapshot is written to a sibling temporary file, the file is synced, and\n  then atomically renamed over the persistence file. The containing directory\n  is synced when the platform supports it. A crash before the rename retains\n  the previous complete snapshot; a temporary file may remain for cleanup.\n- Background flush failures are logged. Explicit `flush()` and `close()` calls\n  reject on write, sync, or rename failures so their callers can report that\n  recent in-memory changes may not be durable.\n\n### Hydration and corruption\n\n- Construction synchronously loads an existing non-empty persistence file.\n  Read failures abort construction.\n- Invalid N-Quads are never swallowed. The file is renamed to\n  `<persist-path>.corrupt-<timestamp>` for forensics, the failure is logged,\n  and construction throws. A later start can continue with an empty store\n  while the quarantined file remains available for investigation.\n\n### Graceful shutdown\n\n- `close()` cancels the debounce, waits for any in-flight snapshot, and runs a\n  final flush. For `oxigraph-worker`, the close request delegates to that same\n  final flush and is not subject to the read-operation timeout; the worker is\n  terminated only after the request settles.\n- `DKGAgent.stop()` awaits `store.close()`. If the final flush fails, shutdown\n  continues but emits a loud operator-facing error stating that the on-disk\n  store may be missing recent inserts.\n- Forced termination can still lose changes made after the last successful\n  flush. The atomic snapshot protocol protects the previously persisted file\n  from a torn overwrite; it cannot make unflushed memory durable.\n\nThe executable regression contract is in\n[`test/oxigraph-persistence.test.ts`](test/oxigraph-persistence.test.ts). The\n[archived WM persistence incident report](../../docs/archive/internal/bugs/wm-persistence-regression.md)\nretains the original diagnosis, reproduction evidence, and fix history.\n\n## Embedded worker store (`oxigraph-worker`) tuning\n\nThe embedded worker runs **all** store operations on a single worker thread, so\na long-running or stuck op (a huge import, an expensive query) blocks every\nother store-backed request behind it. Under real load this surfaces as the\ndaemon's `/api/status` staying green while `/api/query`,\n`/api/context-graph/list`, and `/api/assertion/create` hang. A `store.options`\nknob bounds that blast radius:\n\n| Option | Default | Purpose |\n|---|---|---|\n| `operationTimeoutMs` | `120000` | Reject a **read-only** op (`query`, `hasGraph`, `listGraphs`, `countQuads`) that exceeds this instead of hanging forever — that's where the user-visible hang shows up. `0` disables (restores unbounded behaviour). `close` is exempt — its final flush always runs to completion so shutdown can't drop pending writes. |\n\nMutations (`insert`, `delete`, …) are intentionally **not** bounded by this\ntimeout. The bound only drops the *caller's* promise — the single worker thread\nkeeps running the op — so a \"timed-out\" write could still commit afterwards,\nand the rest of the codebase treats a rejected `insert`/`delete` as a clean\nfailure. Bounding only reads surfaces a wedged worker on the paths that hang\nwithout inventing an indeterminate write outcome. `insert()` therefore stays\nstrictly atomic (all quads commit or the call fails), which callers rely on.\n\n```jsonc\n// ~/.dkg/config.json\n\"store\": {\n  \"backend\": \"oxigraph-worker\",\n  \"options\": { \"operationTimeoutMs\": 120000 }\n}\n```\n\nFor heavy / production workloads, prefer an out-of-process SPARQL server\n(`sparql-http` or `blazegraph`), which handles reads and writes concurrently\nand keeps the daemon responsive under load.\n\n## External-store admission and deadlines\n\nAll external adapters share a process-wide priority scheduler. Waiting work is\nbounded independently for `ack`, `normal`, and `background` traffic, and an\noperation rejected before dispatch receives `StoreSchedulerBusyError` with\n`code: STORE_SCHEDULER_BUSY`, `retryable: true`, and a reason of either\n`queue_full` or `queue_wait_timeout`. Because this error is only created before\nthe operation closure starts, retrying it cannot duplicate a write that might\nalready have reached the store.\n\nEach external adapter supplies the canonical store operation as queue-entry\nmetadata, and the scheduler binds it when creating either admission rejection.\nDecorators validate that tagged operation-outcome contract rather than the\nerror class alone: a rejected nested read does not imply that an enclosing\nreplace failed before mutation.\n\n| Environment variable | Default | Purpose |\n|---|---:|---|\n| `DKG_STORE_MAX_CONCURRENT` | `8` | Maximum external-store operations in flight. |\n| `DKG_STORE_ACK_RESERVED_SLOTS` | `1` | In-flight capacity reserved for ACK work. |\n| `DKG_STORE_NORMAL_RESERVED_SLOTS` | `1` | Non-ACK capacity kept available for normal work while background operations are in flight. |\n| `DKG_STORE_BACKGROUND_RESERVED_SLOTS` | `1` | Non-ACK capacity reserved for background progress. |\n| `DKG_STORE_QUEUE_LIMIT` | `64` | Maximum waiting operations in each priority queue. |\n| `DKG_STORE_ACK_QUEUE_LIMIT` | common limit | Optional ACK queue override. |\n| `DKG_STORE_NORMAL_QUEUE_LIMIT` | common limit | Optional normal queue override. |\n| `DKG_STORE_BACKGROUND_QUEUE_LIMIT` | common limit | Optional background queue override. |\n| `DKG_STORE_QUEUE_WAIT_TIMEOUT_MS` | `10000` | Maximum pre-dispatch wait before a retryable busy rejection. |\n| `DKG_BLAZEGRAPH_OPERATION_TIMEOUT_MS` | `30000` | Blazegraph end-to-end operation deadline, including scheduler wait, HTTP, response decoding, and mapping. |\n\nNormal and background reserves are normalized against the available non-ACK\ncapacity. At least one background slot remains available, and the background\nprogress floor is capped to its admission ceiling so conflicting custom values\ncannot leave usable capacity idle.\n\nBlazegraph's deadline can also be set per store, which takes precedence over\nthe environment default:\n\n```jsonc\n\"store\": {\n  \"backend\": \"blazegraph\",\n  \"options\": {\n    \"url\": \"http://127.0.0.1:9999/blazegraph/namespace/dkg/sparql\",\n    \"timeout\": 30000\n  }\n}\n```\n\n## Internal Dependencies\n\n- `@origintrail-official/dkg-core` — configuration types, logging, constants\n","readmeFilename":"README.md"}