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Arab"},"license":"MIT","homepage":"https://github.com/alaarab/phren#readme","keywords":["claude","claude-code","mcp","memory","knowledge"],"repository":{"url":"git+https://github.com/alaarab/phren.git","type":"git","directory":"packages/cli"},"description":"Knowledge layer for AI agents - CLI, MCP server, and data layer","maintainers":[{"name":"alaarab","email":"alaarab@gmail.com"}],"readme":"# phren MCP server\n\nMCP server that indexes your personal phren and exposes it to AI agents via full-text search.\n\nOn startup it walks your phren directory, reads all `.md` files, and builds an in-memory SQLite FTS5 index.\n\nPeriodic remote checks are off by default. Enable them with `phren config pull-interval 60` to check shared Git stores every minute while running, coordinated across MCP clients using the same store. Changed refs are fetched and applied only as clean fast-forwards; dirty or diverged stores are deferred. Pulled changes refresh the index and existing managed skill/instruction mirrors. Configure this machine with `phren config pull-interval 600` (ten minutes) or `phren config pull-interval off`. Periodic checks are disabled for project-local stores and the manual preset; existing lifecycle hooks are configured separately.\n\nPublic surface: 76 MCP implementation tools across 16 catalog modules (search, tasks, findings, notes, memory, data, graph, sessions, ops/review, skills, hooks, config, extraction).\n\nNotable shipped capabilities:\n- finding lifecycle tools: `supersede_finding`, `retract_finding`, `resolve_contradiction`, `get_contradictions`\n- finding provenance: `add_finding.source` (`human|agent|hook|extract|consolidation|unknown`)\n- lightweight daily notes: CRUD in `<project>/notes/YYYY-MM-DD.md`, explicit search, and promotion to findings without automatic prompt injection\n- cross-session continuity: task checkpoints + `session_history`\n- finding impact scoring from injected-context outcomes\n- skill registry behavior: scope precedence, alias-collision handling, visibility gating, generated `skill-manifest.json`\n- lifecycle penalties: superseded 0.25×, retracted 0.1×, contradicted 0.4× confidence in retrieval\n- inactive findings stripped from FTS index (superseded/retracted findings cannot appear in search)\n- auto-tagging: findings without type tags are inferred from content at write time\n- session context diff: `session_start` reports new findings since last session\n- decay resistance: confirmed findings decay 3× slower when repeatedly useful\n\n## Install\n\n```bash\nnpx @phren/cli init\n```\n\nThis sets up phren without needing `sudo` or a global install. On Windows, use `npm install -g @phren/cli` if `npx` isn't available.\n\nOr add manually to Claude Code:\n\n```bash\nclaude mcp add phren -- phren ~/.phren\n```\n\n## Environment variables\n\n| Variable | Default | Description |\n|----------|---------|-------------|\n| `PHREN_PATH` | `~/.phren` | Path to your phren instance |\n| `PHREN_PROFILE` | *(none)* | Active profile name. When unset, phren uses `machines.yaml` when available and otherwise falls back to an unscoped view |\n| `PHREN_PULL_INTERVAL_SECONDS` | `0` (off) | Overrides the machine-local pull interval. Whole seconds from 30–86400, or `0`/`off` to disable periodic MCP checks. |\n| `PHREN_ACTOR` | OS user / env | Actor identity used in governance/audit RBAC checks |\n\n## Tools\n\nSee [docs/api-reference.md](../docs/api-reference.md) for the full API reference.\n\n## Integration model\n\n- Claude: full native lifecycle hooks (`SessionStart`, `UserPromptSubmit`, `Stop`, `PostToolUse`) + MCP\n- Copilot CLI / Cursor / Codex: MCP + generated hook config + session wrapper binaries\n\n## Governance and security highlights\n\n- RBAC uses `.config/access-control.json` and `.runtime/access-control.local.json`\n- Web UI binds loopback-only, uses per-run auth token, enforces CSRF for mutations, and sets CSP headers\n- Telemetry is opt-in only (`phren config telemetry on`) and stored locally in `.runtime/telemetry.json`\n\n### search_knowledge\n\nFull-text search across all indexed markdown files with synonym expansion.\n\n```\nquery: string              - FTS5 query (supports AND, OR, NOT, \"phrase matching\")\nlimit?: number             - Max results, 1-20, default 5\ntype?: string              - Filter: \"claude\", \"findings\", \"reference\", \"summary\", \"task\", \"skill\"\nproject?: string           - Filter to a specific project\ntag?: string               - Filter findings by type tag: decision, pitfall, pattern, tradeoff, architecture, bug\nsince?: string             - Filter findings by date: \"7d\", \"30d\", \"YYYY-MM\", \"YYYY-MM-DD\"\nstatus?: string            - Filter by lifecycle status: active, superseded, contradicted, stale, invalid_citation, retracted\ninclude_history?: boolean  - Include superseded/retracted findings (default false)\nsynthesize?: boolean       - Generate a synthesis paragraph from top results using an LLM\n```\n\n### get_project_summary\n\nReturns a project's summary.md content, path to its AGENTS.md, and a list of indexed files.\n\n```\nname: string      - Project name (e.g. \"my-app\", \"backend\")\n```\n\n### list_projects\n\nLists all projects in the active profile with a brief description and which docs exist.\n\nNo parameters.\n\n## How it works\n\n1. Reads `PHREN_PATH` (or defaults to `~/.phren`)\n2. Resolves the active profile from `PHREN_PROFILE`, or from `machines.yaml` when the env var is unset\n3. If no active profile can be resolved yet, falls back to an unscoped view of top-level project directories\n4. Walks each project directory, reads `.md` files, classifies them by filename\n5. Builds an in-memory SQLite FTS5 index with Porter stemming\n6. Serves tools over stdio using the MCP protocol\n\nFile types are derived from filenames and directories: `AGENTS.md` -> \"claude\", `summary.md` -> \"summary\", `FINDINGS.md` -> \"findings\", `tasks.md` -> \"task\", files under `notes/` -> \"notes\", files under `reference/` -> \"reference\", files under `skills/` -> \"skill\".\n\n## Development\n\n```bash\ncd ~/phren\nnpm install\nnpm run build    # Compile TypeScript\nnpm run dev      # Run with tsx (hot reload)\nnpm test         # Run all tests\n```\n","readmeFilename":"README.md"}