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Koes and contributors"},"license":"BSD-3-Clause","homepage":"http://3dmol.org","repository":{"type":"git","url":"git+https://github.com/3dmol/3Dmol.js.git"},"description":"JavaScript/TypeScript molecular visualization library","maintainers":[{"name":"helblazer811","email":"alechelbling1@gmail.com"},{"name":"dkoes","email":"dkoes@pitt.edu"}],"readme":"# 3Dmol.js\n[![CDNJS](https://img.shields.io/cdnjs/v/3Dmol.svg)](https://cdnjs.com/libraries/3Dmol)\n[![codecov](https://codecov.io/gh/3dmol/3Dmol.js/branch/master/graph/badge.svg)](https://codecov.io/gh/3dmol/3Dmol.js)\n[![Github CI](https://github.com/3dmol/3Dmol.js/actions/workflows/CI.yml/badge.svg)](https://github.com/3dmol/3Dmol.js/actions)\n\n3Dmol.js is an object-oriented, WebGL accelerated JavaScript library for online molecular visualization.\n\nSince 3Dmol.js is licensed under the permissive BSD open-source license, you are free to use it in any project, as long the code is properly acknowledged and [cited](http://dx.doi.org/10.1093/bioinformatics/btu829).\n\nWith 3Dmol.js, you can add beautifully rendered molecular visualizations to your web applications. Features include:\n* support for pdb, sdf, mol2, xyz, cif, cdjson, mmtf, prmtop, gro, pqr, cube, and vasp formats\n* parallelized molecular surface computation\n* sphere, stick, line, cross, cartoon, and surface styles\n* atom property based selection and styling\n* labels\n* clickable interactivity with molecular data\n* geometric shapes including spheres and arrows\n\nSee the [documentation](https://3dmol.org/doc/index.html) to learn how to use 3Dmol.js as a [hosted viewer](https://3dmol.org/doc/tutorial-url.html), [embeddable viewer](https://3dmol.org/doc/tutorial-embeddable.html), or as a component of a larger application.\n\n## Examples\n\n### [HTML](https://3dmol.org/doc/tutorial-embeddable.html)\n\n<img src=\"examples/embed.png\" width=400>\n\n```html\n<script src=\"https://3Dmol.org/build/3Dmol-min.js\"></script>     \n \n <div style=\"width: 400px; height: 400px;\" \n        class='viewer_3Dmoljs' data-pdb='4N8T' data-style='cartoon:color=spectrum'\n        data-surface='opacity:.7;color:white'></div>\n```\n\n#### JavaScript\nWe support the use of both PDB queries as well as PDB files.\n\n![Alt Text](examples/example1.png)\n\nFirst you simply create the viewer with a div's id.\n```javascript\nvar viewer = $3Dmol.createViewer($(\"#div\"));\n```\nThen you can download a protein data bank model (here pdb:1MO8) and display it with the styling of your choosing.\n\n```javascript\n$3Dmol.download(\"pdb:1MO8\",viewer,{multimodel:true, frames:true},function(){\n\tviewer.setStyle({}, {cartoon:{color:\"spectrum\"}});\n\tviewer.render();\n});\n\n```\n#### Surfaces\nWe also support the use of surfaces that are asynchronously loaded and support different color schemes\n\n![Alt Text](examples/example2.png)\n\n```javascript\nviewer.addSurface($3Dmol.SurfaceType.VDW, {\n    opacity:0.85,\n    voldata: new $3Dmol.VolumeData(volumedata, \"cube\"),\n    volscheme: new $3Dmol.Gradient.ROYGB(range[1],range[0])\n},{});\n```\n\n#### Shapes\nThe use of different shapes and styles is supported.\n\n![Alt Text](examples/example3.png)\n\n```javascript\nviewer.addCylinder({start:{x:0.0,y:2.0,z:0.0},\n    end:{x:0.0,y:10.0,z:0.0},\n    radius:0.5,\n    fromCap:false,\n    toCap:true,\n    color:'teal'});\nviewer.addCylinder({start:{x:15.0,y:0.0,z:0.0},\n    end:{x:20.0,y:0.0,z:0.0},\n    radius:1.0,\n    color:'black',\n    fromCap:false,\n    toCap:false});\n```\n\n## Documentation\n\nPlease check out our documentation at [3dmol.js](https://3dmol.org/doc/index.html). We have tutorials, as well as the stable release of the platform.\n\n## Contact\n\nPlease address any questions or concerns to [dkoes@pitt.edu](mailto:dkoes+3dmol@pitt.edu).\nYou may also [submit an issue](https://github.com/3dmol/3Dmol.js/issues/new/choose) on github.\n\n## Citing\n\nIf you use 3Dmol.js, please cite our [Bioinformatics paper](http://bioinformatics.oxfordjournals.org/content/31/8/1322).\n\n## Funding\n\n3DMol.js is funded through R35GM140753 (and previously R01GM108340) from the National Institute of General Medical Sciences. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute of General Medical Sciences or the National Institutes of Health.\n","readmeFilename":"README.md","users":{"helblazer811":true}}