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agents

\n\n

One config to rule them all.
Practical standard layer for multi-LLM development.

\n\n

\n \"npm\n \"downloads\"\n \"node\n \"license\"\n

\n\n

\n Quick Start ·\n Integrations ·\n Commands ·\n Plugins ·\n FAQ\n

\n\n

\n \"agents\n

\n\n---\n\n## The Problem\n\nInstructions converged on `AGENTS.md` and skills converged on `SKILL.md`. MCP server configuration did not. Every tool keeps its own file, in its own format, in its own place:\n\n| Format | Tools |\n|:--|:--|\n| TOML, `mcp_servers` tables | Codex (`.codex/config.toml`), Grok Build (`.grok/config.toml`) |\n| JSON, `mcpServers` key | Claude Code and Copilot CLI (`.mcp.json`), Claude Desktop (global), Gemini CLI (`.gemini/settings.json`), Cursor (`.cursor/mcp.json`), Antigravity (`.agents/mcp_config.json`), Devin Desktop (global), Devin CLI (`.devin/mcp_config.json`), Junie (`.junie/mcp/mcp.json`), Factory Droid (`.factory/mcp.json`) |\n| JSON, another key | Copilot VS Code (`servers`), OpenCode and Kilo (`mcp`), Amp (`amp.mcpServers`), Zed (`context_servers`) |\n| YAML | Goose (`extensions` in `~/.config/goose/config.yaml`) |\n\nAdd a server by hand and you write it 18 times, then watch the copies drift apart.\n\n`agents` keeps one source of truth in `.agents/` and materializes it for every tool you enable.\n\n---\n\n## Quick Start\n\n```bash\n# 1. Install\nnpm install -g @agents-dev/cli\n\n# 2. Interactive setup — picks integrations, adds MCP servers, syncs everything\nagents start\n\n# 3. Re-sync whenever config changes\nagents sync\n```\n\n`.agents/agents.json` is now the single source of truth. `agents sync --check` exits `2` when a tool config has drifted, so it works as a CI gate.\n\n---\n\n## Supported Integrations\n\nEighteen tools. \"Verified\" means the tool's own CLI was run against the file this project writes; the rest follow vendor documentation and are worth reporting on if something is off.\n\n| Integration | `--llm` id | MCP config it writes | Skills | Verified |\n|:--|:--|:--|:--:|:--:|\n| Codex | `codex` | `.codex/config.toml` (managed block, project trust handled) | native | ✅ |\n| Claude Code | `claude` | `.mcp.json` project scope or CLI local/user scope, plus root `CLAUDE.md` wrapper | bridge | ✅ |\n| Claude Desktop | `claude_desktop` | global `claude_desktop_config.json`, stdio servers only | — | ✅ |\n| Gemini CLI | `gemini` | `.gemini/settings.json` | bridge | ✅ |\n| Cursor | `cursor` | `.cursor/mcp.json` + CLI enable | bridge | ✅ |\n| Copilot VS Code | `copilot_vscode` | `.vscode/mcp.json` | native | ✅ |\n| Copilot CLI | `copilot_cli` | `.mcp.json`, or `.github/mcp.json` | native | ✅ |\n| Antigravity | `antigravity` | `.agents/mcp_config.json` | flat copy | ✅ |\n| Devin Desktop (Windsurf) | `windsurf`, `devin_desktop` | global `~/.codeium/windsurf/mcp_config.json` | bridge | ✅ |\n| OpenCode | `opencode` | `opencode.json` (`mcp`, or `mcp.servers` for OpenCode 2) | native | ✅ |\n| Junie | `junie` | `.junie/mcp/mcp.json` | bridge | ✅ |\n| Grok Build | `grok` | `.grok/config.toml` (managed block, folder trust handled) | native | ✅ |\n| Amp | `amp` | `.amp/settings.json` (`amp.mcpServers`) | native | ✅ |\n| Factory Droid | `droid`, `factory` | `.factory/mcp.json` | native | ✅ |\n| Kilo | `kilo`, `kilocode` | `.kilo/kilo.jsonc` (`mcp`) | bridge | — |\n| Devin CLI | `devin` | `.devin/mcp_config.json` | native | ✅ |\n| Zed | `zed` | `.zed/settings.json` (`context_servers`) | native | — |\n| Goose | `goose` | `~/.config/goose/config.yaml` (`extensions`) | native | ✅ |\n\n**Skills column.** `bridge` means a symlink from the tool's directory to `.agents/skills` (a copy where symlinks are unavailable). `native` means the tool reads `.agents/skills` itself, so nothing is created. `—` means the tool's project-level skill location is not implemented here.\n\n**Grok folder trust.** Grok ignores a project's MCP servers and its skills until the folder is trusted, and says nothing about it: `grok inspect` simply lists none. Trust lives in `~/.grok/trusted_folders.toml`, separate from `config.toml`. `agents doctor` reports an untrusted folder and `agents doctor --fix` records the trust.\n\n**Shared files.** `.mcp.json` is read by both Claude Code and Copilot CLI, so `agents` writes it once for both. A server targeted at only one of them is still visible to the other; the sync says so rather than pretending targets isolate it.\n\n**Goose secrets.** Goose reads credentials from the environment through `env_keys`, so values are never written into its config. The sync lists which variables have to exist in your shell.\n\n---\n\n## Project Layout\n\n```\nyour-project/\n├── AGENTS.md ← Canonical instructions for all tools\n├── CLAUDE.md ← Generated Claude wrapper (`@AGENTS.md`)\n├── .agents/\n│ ├── agents.json ← MCP servers, profiles, config (commit this)\n│ ├── local.json ← Secrets & overrides (gitignored)\n│ ├── mcp_config.json ← Generated Antigravity workspace MCP\n│ ├── skills/ ← Reusable workflow definitions\n│ │ └── my-skill/SKILL.md\n│ └── generated/ ← Auto-generated artifacts (gitignored)\n│\n│ ┌─── Generated by `agents sync` ───┐\n├── .mcp.json │ Claude Code + Copilot CLI\n├── .codex/config.toml │ Codex\n├── .grok/config.toml │ Grok Build\n├── .gemini/settings.json │ Gemini CLI\n├── .cursor/mcp.json │ Cursor\n├── .vscode/mcp.json │ Copilot VS Code\n├── .amp/settings.json │ Amp\n├── .factory/mcp.json │ Factory Droid\n├── .kilo/kilo.jsonc │ Kilo\n├── .devin/mcp_config.json │ Devin CLI\n├── .zed/settings.json │ Zed\n├── opencode.json │ OpenCode\n├── .junie/mcp/mcp.json │ Junie\n└── .claude/skills → .agents/skills │ Skill bridges\n```\n\n> **Git strategy.** In the default `source-only` mode, only `.agents/agents.json`, `.agents/skills/` and `AGENTS.md` are committed: everything the sync generates is gitignored and rebuilt from them. In `commit-generated` mode the generated files stay out of `.gitignore`, so a clone gets working tool configs without installing this CLI. That is how you commit `.mcp.json` for the rest of the team.\n>\n> Either way, files that hold a tool's own settings (`.zed/settings.json`, `.amp/settings.json`, `.kilo/kilo.jsonc`) and `.github/mcp.json` are never added to `.gitignore`: the sync merges its entries into them and leaves the rest of the file, including whether you track it, to you.\n\n---\n\n## Command Overview\n\n### Setup & Sync\n\n| Command | Description |\n|:--------|:------------|\n| `agents start` | Interactive setup: integrations, MCP servers, skills, first sync |\n| `agents init` | Scaffold `.agents/` without the wizard |\n| `agents sync` | Regenerate and materialize all tool configs |\n| `agents sync --check` | Read-only drift check, exits `2` when out of sync |\n| `agents sync --profile ci` | Sync one profile without changing the active one |\n| `agents watch` | Auto-sync on `.agents/` changes |\n\n### Diagnostics\n\n| Command | Description |\n|:--------|:------------|\n| `agents status` | Integrations, MCP servers, file states, live probes |\n| `agents doctor` | Validate configs and report problems |\n| `agents doctor --fix` | Apply the fixes it can make safely |\n| `agents update` | Check npm for a newer CLI |\n\n### MCP Servers\n\n| Command | Description |\n|:--------|:------------|\n| `agents mcp add ` | Add a server interactively or from a URL |\n| `agents mcp import --file config.json` | Bulk import from JSON/JSONC |\n| `agents mcp list` | List configured servers |\n| `agents mcp remove ` | Remove a server |\n| `agents mcp test [--runtime]` | Validate definitions, optionally through tool CLIs |\n| `agents mcp budget` | Connect to each server and measure its context cost |\n\n### Profiles\n\n| Command | Description |\n|:--------|:------------|\n| `agents profile set ci --server docs --server git` | Create or replace a profile |\n| `agents profile use ci` | Activate a profile and sync |\n| `agents profile use` | Clear the profile, back to every server |\n| `agents profile list` | Show profiles and the active one |\n| `agents profile remove ci` | Delete a profile |\n\n### Plugins\n\n| Command | Description |\n|:--------|:------------|\n| `agents plugin export --name my-stack` | Build an Agent Plugins v1 package from `.agents` |\n| `agents plugin validate ` | Check a package against the specification |\n| `agents plugin import ` | Add a package's servers and skills to this project |\n\n### Skills & Integrations\n\n| Command | Description |\n|:--------|:------------|\n| `agents skills list` | List skills found under `.agents/skills/` |\n| `agents connect --llm cursor,grok` | Enable integrations |\n| `agents disconnect --llm codex` | Disable integrations |\n| `agents reset` | Remove generated files, keep `.agents/` |\n| `agents reset --hard` | Full cleanup |\n\n### Global Mode\n\nRun any command with `--global` (or `-g`, or from `$HOME`) to manage MCP servers and skills machine-wide from `~/.agents/agents.json`:\n\n```bash\nagents init -g\nagents connect -g --llm opencode,codex,grok\nagents sync -g\n```\n\nTools that only have a user-level config (Claude Desktop, Devin Desktop, Goose) are written there in both modes.\n\n---\n\n## Agent Plugins\n\n[Agent Plugins 1.0.0](https://agent-plugins.org/specification) is a vendor-neutral package format for skills and MCP servers, read by ChatGPT and Codex, Cursor, GitHub Copilot, Kiro and VS Code. A package is a directory with `plugin.json`, an `mcp.json` and a `skills/` folder, which is close to what `.agents/` already holds.\n\n```bash\nagents plugin export --name my-stack --plugin-version 1.0.0\n```\n\n```\ndist/agent-plugin/\n├── plugin.json $schema, name, version, description\n├── mcp.json $schema, mcpServers\n└── skills/ copied from .agents/skills\n```\n\nExport reads `.agents/agents.json` only, never `local.json`: what ships is the `${VAR}` placeholder from the committed file, and the command prints which variables the package needs. `${PROJECT_ROOT}` becomes the specification's `${PLUGIN_ROOT}`.\n\nGoing the other way, `agents plugin import ./some-plugin` adds the package's servers under its plugin name (`my-stack.docs`) so nothing you already defined is replaced.\n\n---\n\n## Context Budget\n\nMCP servers cost context before an agent does any work: every tool definition is loaded up front.\n\n```bash\nagents mcp budget\n```\n\n```\nMCP context budget:\n everything 13 tools ~ 1916 tokens\n filesystem 11 tools ~ 1240 tokens\n broken error: spawn broken-server ENOENT\n\nServers 3\nTools 24\nEstimated ~3156 tokens of context\n```\n\nThe command speaks MCP `2026-07-28` directly over stdio and streamable HTTP, so the numbers come from the servers themselves. Servers built against the handshake revisions (`2025-11-25` and earlier) are detected and handled the way the specification prescribes, so both eras work. Token counts are estimated from the size of the tool definitions, not measured by a model. Add `--verbose` for a per-tool breakdown, and `--profile` to measure what one profile would cost.\n\nServers whose config still contains an unresolved `${VAR}` are skipped rather than started.\n\n---\n\n## MCP Server Examples\n\n```bash\n# From a catalog URL\nagents mcp add https://mcpservers.org/servers/context7-mcp\n\n# stdio server\nagents mcp add my-server --command npx --arg @my-org/mcp-server --arg /path/to/project\n\n# HTTP server with a secret header\nagents mcp add company-api --url \"https://api.company.com/mcp\" \\\n --secret-header \"Authorization=Bearer YOUR_API_TOKEN\"\n\n# Only for specific tools\nagents mcp add ide-server --command ide-mcp --target cursor --target zed\n```\n\nA server definition supports `timeout`, `connectTimeout`, `tools`, `disabledTools`, `oauth`, `headersHelper`, `bearerTokenEnvVar` and `envFile`. Each is written only for the tools that document it, and the sync says when a field is dropped for a target that does not support it.\n\nValues support `${VAR}` and `${VAR:-default}`, plus `${PROJECT_ROOT}`.\n\n---\n\n## Security\n\n| | What | Where |\n|:--|:-----|:------|\n| 🔓 | Server definitions, team config | `.agents/agents.json` — **committed** |\n| 🔒 | API keys, tokens, secrets | `.agents/local.json` — **gitignored** |\n\n- Secret-looking values are moved to `local.json` and replaced with `${PLACEHOLDER}` in `agents.json` when a server is added.\n- `agents doctor` warns about literal secrets in committed config.\n- Env keys and header names are validated before they reach a config file or a shell.\n- `agents plugin export` never reads `local.json`.\n- A config this CLI does not gitignore keeps the `${VAR}` placeholder from `agents.json`, whether the value would have come from `local.json` or from your shell. Amp, Zed and Kilo share a file with the tool's own settings, and `.github/mcp.json` is a file teams review; the sync lists which variables to export so those tools can resolve them. `commit-generated` mode holds secrets back from every generated config for the same reason.\n- A config this CLI rewrites keeps the permissions it had, so a file you restricted to `0600` stays that way.\n\n---\n\n## Team Workflow\n\n**Lead sets up the project:**\n```bash\nagents start\nagents mcp add https://mcpservers.org/servers/context7-mcp\ngit add .agents/agents.json .agents/skills/ AGENTS.md && git commit -m \"Add agents config\"\n```\n\nIn `source-only` mode that is everything the team needs: each clone runs `agents sync` and\ngets the tool configs locally. Switch `syncMode` to `commit-generated` if you would rather\ncommit `.mcp.json` and the rest for people who do not install the CLI.\n\n**New member onboards:**\n```bash\ngit clone && cd \nagents start # keeps the committed config, writes local tool files\n```\n\n**CI:**\n```bash\nagents sync --check # exits 2 when a tool config drifted from .agents/\n```\n\n---\n\n## FAQ\n\n
\nDoes this replace AGENTS.md?\n
\nNo. AGENTS.md stays the instruction file every tool reads. This CLI handles the machine-readable side (MCP servers, skills, per-tool config) and generates the minimal root CLAUDE.md wrapper Claude Code needs, since Claude Code does not read AGENTS.md.\n
\n\n
\nWhy does Claude Code use .mcp.json now?\n
\nProject scope is the location Anthropic documents for teams: it lives in the repository, so everyone working on it gets the same servers, and in `commit-generated` mode it is reviewed like any other file. Before 0.9.0 the CLI registered servers in the machine-local ~/.claude.json, which nobody else could see. Set integrations.options.claudeScope to \"local\" for the old behaviour; projects upgrading from schema 3 keep it automatically. For servers available in every project, set it to \"user\" (\"global\" is an alias) and run agents sync -g. New home-directory installs (agents init -g or agents start -g) default to user scope; normal repositories default to project scope. Existing explicit choices are preserved. See [Claude MCP scopes](docs/agents-system.md#claude-mcp-scopes) for migration and cleanup.\n
\n\n
\nCan I use this with only one tool?\n
\nYes. Secret splitting, drift checks, plugin export and the context budget are useful with a single tool.\n
\n\n
\nWhat happens during agents sync?\n
\nIt reads .agents/, merges local.json, resolves placeholders, applies the active profile, renders each tool's format and writes files atomically. Files shared with a tool's own settings (Amp, Zed, Kilo, Gemini, OpenCode, Goose) are merged, so settings the CLI does not own survive. Runs are idempotent. OpenCode gets the mcp.<name> shape that every OpenCode version reads, or the OpenCode 2 mcp.servers shape once the file already has mcp.servers or a server uses an option only OpenCode 2 has; see OpenCode options.\n
\n\n
\nCan I target an MCP server to specific tools only?\n
\nYes, with \"targets\" in the definition or --target on agents mcp add. The exception is .mcp.json, which Claude Code and Copilot CLI both read: a server in that file is visible to both, and the sync warns instead of implying otherwise.\n
\n\n
\nWhat does agents doctor check?\n
\nMissing or invalid config, literal secrets in committed files, unresolved env vars, drift in generated files, Codex project trust, a global Codex config that cannot be parsed, deprecated sse transports, skill frontmatter against the Agent Skills specification, and the state of skill bridges.\n
\n\n
\nHow do I upgrade from 0.8.x?\n
\nRun any command. .agents/agents.json migrates from schema 3 to 4 automatically and the previous file is kept as agents.json.v3.bak. Nothing else is required.\n
\n\n---\n\n## Documentation\n\n- [`docs/agents-system.md`](docs/agents-system.md) — how sync, skills and generated files work\n- [`docs/EXAMPLES.md`](docs/EXAMPLES.md) — project setups\n- [`CONTRIBUTING.md`](CONTRIBUTING.md) — development workflow\n- [`CHANGELOG.md`](CHANGELOG.md) — release history\n\n## License\n\nApache 2.0. See [LICENSE](LICENSE) and [NOTICE](NOTICE).\n","readmeFilename":"README.md"}