# @platforma-open/milaboratories.top-antibodies.workflow

## 3.0.1

### Patch Changes

- 3e9c9ef: bump sdk for fix table query
- Updated dependencies [3e9c9ef]
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.4.3
  - @platforma-open/milaboratories.top-antibodies.assembling-fasta@1.3.2
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@2.1.2
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.8.3
  - @platforma-open/milaboratories.top-antibodies.umap@1.2.3

## 3.0.0

### Major Changes

- c2c2b06: VDJ Integration support, BlockV3 api migration

## 2.2.2

### Patch Changes

- 199e95d: Updated dependencies
- Updated dependencies [199e95d]
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.4.2
  - @platforma-open/milaboratories.top-antibodies.assembling-fasta@1.3.1
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@2.1.1
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.8.2
  - @platforma-open/milaboratories.top-antibodies.umap@1.2.2

## 2.2.1

### Patch Changes

- Updated dependencies [6ecafd5]
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.4.1

## 2.2.0

### Minor Changes

- f54202c: Add isNA/isNotNA filter types for lead selection filters

  Columns with discrete allowed values (like Structural Liabilities with None/Low/Medium/High) previously only offered "Is one of" / "Is not one of" filter types, making it impossible to filter by empty/NA values. Now all column types (numeric, string, and discrete) include "Is empty (NA)" and "Is not empty (NA)" filter options.

### Patch Changes

- Updated dependencies [f54202c]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@2.1.0

## 2.1.0

### Minor Changes

- 84a7fe5: Deal with ANARCI numbering issues

### Patch Changes

- Updated dependencies [84a7fe5]
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.4.0

## 2.0.1

### Patch Changes

- 140ce30: Support custom block label

## 2.0.0

### Major Changes

- 590699a: Introduce diverisified ranking, in-vivo score estimation and workflow presets

### Patch Changes

- Updated dependencies [590699a]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@2.0.0

## 1.17.6

### Patch Changes

- 65cbdd5: Minor fix to prevent leads spec multiple match

## 1.17.5

### Patch Changes

- ff606b5: Implement multi-selection filters
- Updated dependencies [ff606b5]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.9.3

## 1.17.4

### Patch Changes

- 605fdf0: Add domain to exported filter

## 1.17.3

### Patch Changes

- 535be8f: Exporte selected Leads

## 1.17.2

### Patch Changes

- Updated dependencies [5857c20]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.9.2
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.8.1

## 1.17.1

### Patch Changes

- 0b57c1b: Show only specific columns be default: Clone, Cluster Id, AA sequence and filter/rank columns
- Updated dependencies [0b57c1b]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.9.1

## 1.17.0

### Minor Changes

- b201aaf: Improve cluster ranking, improve performance

### Patch Changes

- Updated dependencies [b201aaf]
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.3.0
  - @platforma-open/milaboratories.top-antibodies.assembling-fasta@1.3.0
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.9.0
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.8.0

## 1.16.0

### Minor Changes

- 4ecbe6b: Improve cluster-based ranking

### Patch Changes

- Updated dependencies [4ecbe6b]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.8.0

## 1.15.1

### Patch Changes

- 5619236: Fix missing input related error
- Updated dependencies [5619236]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.7.2

## 1.15.0

### Minor Changes

- 00143a9: multiple clustering blocks fix, columns names fix, dependencies updates

## 1.14.1

### Patch Changes

- b99b7ba: Revert optimization changes
- Updated dependencies [b99b7ba]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.7.1
  - @platforma-open/milaboratories.top-antibodies.assembling-fasta@1.2.1
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.2.1
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.7.1
  - @platforma-open/milaboratories.top-antibodies.umap@1.2.1

## 1.14.0

### Minor Changes

- 532b9ed: Block performance optimization

### Patch Changes

- Updated dependencies [532b9ed]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.7.0
  - @platforma-open/milaboratories.top-antibodies.assembling-fasta@1.2.0
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.2.0
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.7.0
  - @platforma-open/milaboratories.top-antibodies.umap@1.2.0

## 1.13.2

### Patch Changes

- e17b19a: Remove unused `saveStdoutContent` calls, update sdk

## 1.13.1

### Patch Changes

- 9245274: Fix filter issues related to data types
- Updated dependencies [9245274]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.6.1

## 1.13.0

### Minor Changes

- 3825a42: Fix errors related to numeric properties that apply only to a subset of clonotypes and to multiple clustering blocks upstream

### Patch Changes

- Updated dependencies [3825a42]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.6.0
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.6.0

## 1.12.0

### Minor Changes

- ccc8076: kabat numbering added

### Patch Changes

- Updated dependencies [ccc8076]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.5.0
  - @platforma-open/milaboratories.top-antibodies.assembling-fasta@1.1.0
  - @platforma-open/milaboratories.top-antibodies.anarci-kabat@1.1.0
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.5.0

## 1.11.3

### Patch Changes

- 44895be: Support parquet format

## 1.11.2

### Patch Changes

- 65e8749: Minor bugs correction and SDK update

## 1.11.1

### Patch Changes

- edbd894: technical release
- 6dc2d2b: technical release
- e581493: technical release
- 1c26f0d: technical release
- Updated dependencies [edbd894]
- Updated dependencies [6dc2d2b]
- Updated dependencies [e581493]
- Updated dependencies [1c26f0d]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.4.4
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.4.4
  - @platforma-open/milaboratories.top-antibodies.umap@1.1.4

## 1.11.0

### Minor Changes

- 67443d9: Move all calculations to prerun

## 1.10.5

### Patch Changes

- technical release
- Updated dependencies
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.4.3
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.4.3
  - @platforma-open/milaboratories.top-antibodies.umap@1.1.3

## 1.10.4

### Patch Changes

- Updated dependencies [020a5b4]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.4.2
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.4.2
  - @platforma-open/milaboratories.top-antibodies.umap@1.1.2

## 1.10.3

### Patch Changes

- 2e6e7c9: Label update and minor fix

## 1.10.2

### Patch Changes

- 22b01ef: Updated SDK to support polars.
- Updated dependencies [22b01ef]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.4.1
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.4.1
  - @platforma-open/milaboratories.top-antibodies.umap@1.1.1

## 1.10.1

### Patch Changes

- Updated dependencies [c4927c6]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.4.0
  - @platforma-open/milaboratories.top-antibodies.umap@1.1.0

## 1.10.0

### Minor Changes

- c282203: Improved block performance. Fixed increasing ranking order and cluster size ranking

### Patch Changes

- Updated dependencies [c282203]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.3.0

## 1.9.0

### Minor Changes

- b499ab2: Add rank column

### Patch Changes

- Updated dependencies [b499ab2]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.2.0

## 1.8.2

### Patch Changes

- f25cad6: Fix slices typo in main workflow

## 1.8.1

### Patch Changes

- 7397001: Remove typo

## 1.8.0

### Minor Changes

- a435169: Move filters to settings and add prerun

### Patch Changes

- Updated dependencies [a435169]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.1.0
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.4.0

## 1.7.0

### Minor Changes

- 4b1a662: Support batch system and small fix

## 1.6.0

### Minor Changes

- d32234f: Support batch system

## 1.5.0

### Minor Changes

- bf454d4: Default ranking column in case user does not select one
- 4990fd8: Fix empty top and ranking cases

## 1.4.0

### Minor Changes

- b603873: chore: update deps

### Patch Changes

- Updated dependencies [b603873]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.0.3
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.3.2
  - @platforma-open/milaboratories.top-antibodies.umap@1.0.3

## 1.3.1

### Patch Changes

- Updated dependencies [b280c5c]
  - @platforma-open/milaboratories.top-antibodies.sample-clonotypes@1.0.2
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.3.1
  - @platforma-open/milaboratories.top-antibodies.umap@1.0.2

## 1.3.0

### Minor Changes

- 2e24f7a: Disable default normalization in VJ usage plot and change spectratype/VJ usage script to run on top clonotypes if provided

### Patch Changes

- Updated dependencies [2e24f7a]
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.3.0

## 1.2.1

### Patch Changes

- Updated dependencies [6443da1]
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.2.0

## 1.2.0

### Minor Changes

- 5ee90ac: Add CDR3 spectratype

### Patch Changes

- Updated dependencies [5ee90ac]
  - @platforma-open/milaboratories.top-antibodies.spectratype@1.1.0

## 1.1.1

### Patch Changes

- 339a780: Main backbone
- Updated dependencies [339a780]
  - @platforma-open/milaboratories.top-antibodies.software@1.0.1

## 1.1.0

### Minor Changes

- 208de2a: First version
