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view of cell volume images","author":{"name":"Megan Riel-Mehan"},"license":"ISC","readme":"# AICS Image Viewer\n\nThis is a browser based volume viewer built with React and WebGL (Three.js).\nVolume data is provided to the core 3d viewer via a json file containing dimensions and other metadata, and texture atlases (png files containing volume slices tiled across the 2d image).\nTherefore the texture atlases must be prepared in advance before loading into this viewer.\nThere is a server component (aics-image-viewer-service) that can open OME-TIFF, TIFF, and CZI files and generate texture atlases for viewing.  Currently the server component is required.  The viewer sends Allen Institute file paths to the server component, which opens the files and caches the texture atlases, returning the server path to that data.\n\nThe volume shader itself is a heavily modified version of one that has its origins in [Bisque](http://bioimage.ucsb.edu/bisque).\n\n## to use\n- `npm install ac-3d-viewer`\n- import the app as `import { ImageViewerApp } from \"ac-3d-viewer\"`\n- send in props as is shown in public/index.jsx\n```\n    <ImageViewerApp\n        cellId={23618}\n        baseUrl=\"http://dev-aics-dtp-001.corp.alleninstitute.org/cellviewer-1-4-0/Cell-Viewer_Thumbnails/\"\n        cellPath=\"AICS-17/AICS-17_4187_23618\"\n        fovPath=\"AICS-17/AICS-17_4187\"\n        defaultVolumesOn={[0, 1, 2]}\n        defaultSurfacesOn={[]}\n    />\n```","readmeFilename":"README.md"}