Auspice

Auspice

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›Customising Auspice

Introduction

  • Overview
  • Install Auspice
  • How to Run Auspice

Advanced Functionality

  • Displaying multiple trees
  • View Settings
  • Adding extra metadata via CSV/TSV
  • Miscellaneous

Customising Auspice

  • Customising Auspice
  • Client Customisation API
  • Requests Made from the Client

Using a Custom Server

  • Auspice servers
  • Server API
  • Authentication

Narratives

  • Communicating Results Using Narratives
  • Writing a Narrative
  • Converting a narrative to PDF

Release Notes

  • Changelog
  • Auspice Version 2.0

Contributing

  • Contributing to Auspice

Customising Auspice

Auspice allows you to customise the appearance and functionality of Auspice when the client is built. This is how Auspice running locally and nextstrain.org look different, despite both using "Auspice".

mumps Notice the difference? Default Auspice (left) and nextstrain.org's customised version (right)

This is achieved by providing a JSON at build time to Auspice which defines the desired customisations via:

auspice build --extend <JSON>

Here's the file used by nextstrain.org to change the appearance of Auspice in the above image.

See the client customisation API for the available options.

Last updated on 10/17/2019
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Auspice
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If you use auspice, please cite Hadfield et al., 2018
Copyright © 2014-2020 Richard Neher & Trevor Bedford