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development workflow orchestrator","maintainers":[{"name":"halilcosdu","email":"halilcosdu@gmail.com"}],"readme":"```\n  ╔══════════════════════════════════════════╗\n  ║                                          ║\n  ║   ██████  ██████   █████  ██ ██   ██     ║\n  ║   ██   ██ ██   ██ ██   ██ ██ ███  ██     ║\n  ║   ██████  ██████  ███████ ██ ██ █ ██     ║\n  ║   ██   ██ ██   ██ ██   ██ ██ ██  ███     ║\n  ║   ██████  ██   ██ ██   ██ ██ ██   ██     ║\n  ║                                          ║\n  ║   AI workflow orchestrator for           ║\n  ║   Claude Code                            ║\n  ║                                          ║\n  ╚══════════════════════════════════════════╝\n```\n\n**Brain turns Claude Code into a senior engineering team.** It orchestrates 13 specialized AI agents through a structured lifecycle — from research to verified delivery — so you ship production-grade code, not prototypes.\n\n`39 commands` `13 core + 22 specialist agents` `10 hooks` `1784 tests` `zero dependencies`\n\n---\n\n## The Problem\n\nClaude Code is powerful but chaotic. You start building, lose context mid-session, forget what was decided, skip verification, and end up with code that works in demo but breaks in production. There's no structure, no audit trail, no enforcement.\n\n## The Solution\n\nBrain adds structure without adding friction. Every step produces artifacts. Every decision is tracked. Every phase is verified before moving forward. And a hard pipeline gate **prevents Claude from skipping steps**.\n\n```\n/brain:new-project  →  Detects your stack, maps your codebase\n/brain:story        →  Researches domain, creates roadmap with phases\n/brain:discuss      →  Captures architectural decisions before coding\n/brain:plan         →  Creates verified execution plans with TDD\n/brain:execute      →  Builds with per-task commits and deviation handling\n/brain:review       →  Two-stage review: spec compliance + code quality\n/brain:verify       →  3-level verification against must-haves\n/brain:complete     →  Advances to next phase with audit trail\n```\n\n---\n\n## Quick Start\n\n```bash\nnpx brain-dev init\n```\n\nThat's it. Brain detects your project (Laravel, Next.js, Django, FastAPI, Flask, Go, Python, Rails — 15+ frameworks), registers its agents, installs pipeline hooks, generates framework-specific stack commands, and is ready.\n\n```bash\n/brain:new-project           # Detect stack, map codebase\n/brain:story \"v1.0 MVP\"     # Start a milestone with research + roadmap\n/brain:progress              # Where am I? What's next?\n```\n\n---\n\n## Work Hierarchy\n\nBrain provides four levels of work, from lightweight to comprehensive:\n\n| Level | Commands | Pipeline | Duration |\n|-------|----------|----------|----------|\n| **Quick** | `/brain:quick \"fix bug\"` | plan → execute → review → commit | Minutes |\n| **Task** | `/brain:new-task \"add Stripe\"` | discuss → plan → execute → review → verify | Hours |\n| **Story** | `/brain:story \"v1.0 MVP\"` | research → requirements → roadmap → phases | Days/Weeks |\n| **Project** | `/brain:new-project` | detect → map → suggest next step | One-time |\n\n### Quick Tasks\n\nNot everything needs a full phase. For small, focused work:\n\n```bash\n/brain:quick \"fix the login redirect bug\"         # plan → execute → review → commit\n/brain:quick --full \"add rate limiting to API\"     # + verification gate\n```\n\n### Significant Tasks\n\nFor features that need more than a quick fix but less than a full story:\n\n```bash\n/brain:new-task \"add payment integration with Stripe\"\n/brain:new-task --light \"fix auth redirect\"       # Skip discuss + verify (research + review still mandatory)\n/brain:new-task --continue                        # Resume current task\n/brain:new-task --promote 1                       # Promote to roadmap phase\n```\n\n### Stories\n\nStories are Brain's primary way to organize significant work. A story = a milestone.\n\n```bash\n/brain:story \"v1.0 MVP\"\n```\n\nBrain researches your domain with parallel agents, generates requirements with REQ-IDs, creates a phased roadmap, then guides execution phase by phase.\n\n```bash\n/brain:story --continue        # Resume current story step\n/brain:story --list            # List all stories\n/brain:story --complete        # Complete story, bump version\n/brain:story --status          # Show story progress\n```\n\n---\n\n## How It Works\n\n### 13 Core + Dynamic Specialist Agents\n\nBrain doesn't use Claude as a single generalist. It orchestrates a **team of specialists**:\n\n| Agent | Role | What It Does |\n|-------|------|-------------|\n| **Researcher** | Investigation | Analyzes technology, architecture, security, testing |\n| **Synthesizer** | Consolidation | Merges parallel research into actionable recommendations |\n| **Planner** | Architecture | Creates execution plans with dependency graphs and wave assignments |\n| **Checker** | Validation | Validates plans across 8 quality dimensions |\n| **Executor** | Implementation | Builds with TDD, atomic commits, and checkpoint protocol |\n| **Reviewer** | Code Quality | Reviews for DRY, over-engineering, framework best practices |\n| **Spec Reviewer** | Compliance | Verifies implementation matches plan requirements exactly |\n| **Verifier** | Verification | 3-level depth checks: exists, substantive, wired |\n| **Debugger** | Debugging | 4-phase scientific method with hypothesis tracking |\n| **Mapper** | Analysis | Deep codebase analysis (stack, architecture, quality) |\n| **Test Generator** | Testing | Generates tests from plan requirements and implementation summaries |\n| **Requirements Generator** | Requirements | Generates structured requirements with acceptance criteria from research |\n| **Roadmap Architect** | Roadmap | Creates strategically-phased roadmap with dependency analysis |\n\n### State Machine\n\nBrain tracks progress through a deterministic state machine with 21 statuses and strict transition rules:\n\n```\npending → discussing → discussed → planning → planned → executing → executed\n                                                            ↓\n                                              reviewing → reviewed → verifying → verified → complete\n```\n\nEvery command knows what comes next. `/brain:progress` always tells you the right next step. Dangerous regressions (like going from `verified` back to `discussing`) are hard-blocked.\n\n### Pipeline Enforcement (4-Layer Defense)\n\nBrain doesn't just suggest the next step — it **enforces** it with four hard layers:\n\n1. **Prompt injection** — `user-prompt-submit.sh` injects `<HARD-GATE>` reminders when review is pending\n2. **CLI gates** — `requirePassedReview()` blocks completion without `status: passed` in REVIEW.md — no `--force` bypass\n3. **Git commit hook** — `pre-tool-use.sh` blocks `git commit` during post-execution phases without passed review\n4. **State machine** — `executed→verifying` transition removed; review step cannot be skipped at FSM level\n\nCode review is mandatory in **every** pipeline (quick, light, standard, story). Claude cannot bypass it.\n\n### Stack Intelligence System\n\nBrain auto-detects your stack and generates **technology-specific specialist agents**:\n\n- **9 frameworks with specialist agents**: Laravel (Eloquent Expert, Artisan Specialist), Next.js (App Router Expert, RSC Specialist), Django (ORM Expert, DRF Specialist), FastAPI, React Native (Navigation Expert, Expo Specialist), NestJS, Vue.js, Express, SvelteKit\n- **15+ frameworks detected**: + Flask, Rails, Flutter, Spring Boot, Astro, and more\n- **Auto-generated specialists**: `brain-dev init` creates `.claude/agents/brain-stack-*.md` for your framework\n- **Enrichment command**: `/brain:enrich` generates specialist agents + stack profile with Context7 MCP docs\n- **Stack profile**: `.brain/stack/profile.json` stores capabilities, Context7 ID, and agent list\n- **3-layer expertise**: Static patterns + specialist agents + Context7 live documentation\n- **Infrastructure detection**: Docker, CI/CD, monorepo tools, Python ecosystem\n- **Stack commands**: Auto-generates `/stack:*` commands (e.g., `/stack:migrate`, `/stack:test`)\n\n```bash\n/brain:detect                  # Re-scan project stack and infrastructure\n/brain:detect --json           # Machine-readable detection output\n```\n\n---\n\n### Deep Research System\n\nBrain enforces research depth before planning with a scored gate:\n\n- **Research Scorer** — 7-dimension quality scoring: word depth, section structure, version specificity, source credibility, risk awareness, actionable recommendations, code examples\n- **Research Gate** — mandatory depth check before planning with 3 adaptive profiles:\n  - `quick` (threshold: 25) — bug fixes, small changes\n  - `standard` (threshold: 45) — features, refactors\n  - `deep` (threshold: 65) — major features, migrations, security\n- **Micro-Research** — executors can trigger on-demand focused investigation mid-task via `brain-researcher` agent\n\nResearch that doesn't meet the threshold is sent back for deepening. No shallow analysis passes through to planning.\n\n### Plan Quality Scoring\n\nPlans are scored on 6 dimensions before execution:\n\n| Dimension | Weight | What It Checks |\n|-----------|--------|----------------|\n| Coverage | 20 | Are all requirements addressed? |\n| Task Completeness | 20 | Do tasks have behavior, action, verify, done? |\n| Dependency Soundness | 15 | Are file dependencies consistent? |\n| TDD Presence | 15 | Do tasks specify test behaviors? |\n| Scope Control | 15 | Within bounds (≤8 files, 2-4 tasks)? |\n| Specificity | 15 | Are file paths explicit, not vague? |\n\nCross-plan analysis detects files modified in multiple plans (merge conflict risk).\n\n### Wave-Aware Execution\n\nPlans with `wave: N` in frontmatter are grouped. Independent plans in the same wave run in **parallel worktrees/subagents**:\n\n```bash\n/brain:execute                    # Wave-aware: parallel plans spawn parallel executors\n```\n\n### Closed-Loop Test Feedback\n\nThe executor receives live test status from `.brain/.test-bridge.json`:\n\n- `all-passing` → continue\n- `minor-failures` (<20%) → continue with caution\n- `concerning` (20-50%) → review failures\n- `critical` (>50%) → **STOP and fix**\n\n### Post-Execution Quality Gate\n\nBefore phase completion, an execution audit scores results:\n\n- **Plan completion** (30%) — all plans have summaries\n- **Self-check** (25%) — summaries contain \"Self-Check: PASSED\"\n- **File existence** (25%) — key files referenced in summaries exist on disk\n- **Must-haves** (20%) — plan truths addressed\n\n---\n\n## Auto Mode\n\nRun phases autonomously without human intervention:\n\n```bash\n/brain:auto                     # Start autonomous execution\n/brain:auto --dry-run           # Preview runbook without executing\n/brain:auto --stop              # Stop auto mode, release lock\n/brain:auto --phase 3           # Start from a specific phase\n```\n\nAuto mode chains: discuss → plan → execute → review → verify → complete → next phase, with:\n- Budget limits and cost projection\n- Stuck detection and timeout tiers\n- Error recovery decision tree\n- Loop detection (same step fails 3x → stop)\n\n---\n\n## Monitoring & Observability\n\n### Dashboard\n\n```bash\n/brain:dashboard                # TUI dashboard in terminal\n/brain:dashboard --browser      # Open web dashboard in browser (WebSocket real-time)\n/brain:dashboard --watch        # Auto-refresh TUI every 3 seconds\n/brain:dashboard --json         # Machine-readable output\n/brain:dashboard --stop         # Stop running web dashboard server\n```\n\nShows phase progress, cost tracking, timeout status, lock state, and recent events. Web dashboard pushes live state updates over WebSocket every 2 seconds.\n\n### Cost Tracking\n\nBrain tracks token usage and estimates cost per agent, per phase:\n\n```bash\n/brain:progress --cost          # Show budget status\n/brain:config set budget.ceiling_usd 50  # Set spending ceiling\n/brain:config set budget.mode hard-stop  # Block when exceeded\n```\n\nThree budget modes: `warn` (default), `pause`, `hard-stop`.\n\n### Stuck Detection\n\nMulti-source progress detection with configurable timeout tiers:\n\n| Tier | Default | What Happens |\n|------|---------|-------------|\n| **Soft** | 20 min | Warning: \"Consider wrapping up\" |\n| **Idle** | 5 min no progress | Alert: \"Agent may be stuck\" |\n| **Hard** | 45 min | Force: \"Commit WIP and stop\" |\n\n---\n\n## Two-Stage Review\n\nBrain's review system runs two independent passes:\n\n```bash\n/brain:review                  # Both passes: spec compliance + code quality\n/brain:review --spec-only      # Only check: does implementation match plan?\n/brain:review --quality-only   # Only check: DRY, patterns, best practices\n```\n\n**Pass 1 — Spec Compliance:** The spec-reviewer agent extracts every `must_have` from plans and verifies each one against the implementation. Produces `SPEC-REVIEW.md` with PASS/FAIL/PARTIAL per requirement.\n\n**Pass 2 — Code Quality:** The reviewer agent checks for DRY violations, over-engineering, anti-patterns, and framework best practices. Produces `REVIEW.md`.\n\n---\n\n## Git Worktree Isolation\n\nExecute phases in isolated git worktrees to prevent unfinished work from contaminating your main branch:\n\n```bash\n/brain:execute --worktree      # Execute in isolated worktree branch\n```\n\nBrain creates a `brain/phase-*` branch, executes in the worktree, and merges back on successful completion.\n\n---\n\n## Test Generation\n\nAutomatically generate tests from plan requirements and implementation:\n\n```bash\n/brain:add-tests               # Generate tests for current phase\n/brain:add-tests --phase 3     # Generate tests for specific phase\n```\n\nReads PLAN must_haves, SUMMARY implementation details, and VERIFICATION results. Detects your test framework (Jest/Vitest/pytest/PHPUnit) and generates targeted test files.\n\n---\n\n## Assumption Surfacing\n\nSurface hidden assumptions before planning to prevent costly mid-phase pivots:\n\n```bash\n/brain:assumptions             # Surface assumptions for current phase\n/brain:assumptions --phase 3   # Surface assumptions for specific phase\n```\n\nCovers: implementation approach, dependencies/prerequisites, scope boundaries, and risk areas.\n\n---\n\n## Audit & Auto-Fix\n\n```bash\n/brain:audit                   # Audit milestone integration\n/brain:audit --auto-fix        # Find gaps and auto-generate remediation phases\n/brain:audit --phase 3         # Audit a single phase\n```\n\nWhen `--auto-fix` finds gaps (missing review, missing verification, orphan requirements), it automatically inserts targeted remediation phases into the roadmap.\n\n---\n\n## Session Management\n\n```bash\n/brain:pause                    # Save session state for later\n/brain:resume                   # Restore session context\n/brain:recover                  # Detect and recover from crashes\n/brain:health                   # Self-diagnosis and auto-repair\n```\n\nBrain handles context window pressure, session crashes, and stale locks automatically. The `bootstrap.sh` hook restores context on every new session.\n\n---\n\n## Additional Tools\n\n| Command | Description |\n|---------|-------------|\n| `/brain:storm` | Real-time brainstorming server with WebSocket |\n| `/brain:design` | Collaborative design server — component canvas with WebSocket |\n| `/brain:adr` | Architecture Decision Records — auto-created from discussions |\n| `/brain:map` | Deep codebase analysis (stack, architecture, quality) |\n| `/brain:debug` | Standalone debugging with 4-phase scientific method |\n| `/brain:detect` | Re-scan project stack, Python deps, Docker, CI/CD, monorepo |\n| `/brain:uat` | User Acceptance Testing — conversational criteria verification |\n| `/brain:ship` | Generate PR descriptions from verified phase artifacts |\n| `/brain:todo` | Extract and track TODOs from codebase |\n| `/brain:config` | 47 settings across 10 categories |\n\n---\n\n## Plugin System\n\nExtend Brain with custom commands, agents, and hooks:\n\n```\n.brain/plugins/\n└── my-plugin/\n    ├── plugin.json            # { name, version, commands, agents, hooks }\n    ├── commands/\n    │   └── my-command.cjs     # Custom command handler\n    └── templates/\n        └── my-agent.md        # Custom agent template\n```\n\nPlugin commands are namespaced (`my-plugin:my-command`) and automatically registered in the command and agent registries.\n\n---\n\n## Configuration\n\nBrain has three model profiles for cost optimization:\n\n```bash\n/brain:config set agents.profile quality    # Best models everywhere\n/brain:config set agents.profile balanced   # Quality for planning, efficient for checking\n/brain:config set agents.profile budget     # Minimize token cost\n```\n\nKey settings:\n\n```bash\n/brain:config set mode interactive          # Ask before major decisions\n/brain:config set mode auto                 # Full autonomy\n/brain:config set depth standard            # Standard verification\n/brain:config set depth thorough            # Deep verification\n/brain:config set enforcement.level hard    # Strict pipeline enforcement\n```\n\nExport and import configuration across projects:\n\n```bash\n/brain:config export > brain-config.json\n/brain:config import brain-config.json\n```\n\n---\n\n## All Commands\n\n### Setup\n| Command | Description |\n|---------|-------------|\n| `/brain:init` | Initialize brain in current project |\n| `/brain:new-project` | Detect project, map codebase, suggest next step |\n| `/brain:detect` | Re-scan project stack, framework, and infrastructure |\n| `/brain:enrich` | Generate specialist agents + stack profile with Context7 docs |\n| `/brain:update` | Update brain-dev to latest version |\n| `/brain:upgrade` | Version upgrade with hook migration |\n\n### Lifecycle\n| Command | Description |\n|---------|-------------|\n| `/brain:story` | Start a milestone with research, requirements, roadmap |\n| `/brain:discuss` | Capture architectural decisions before coding |\n| `/brain:assumptions` | Surface assumptions before planning |\n| `/brain:plan` | Create verified execution plans with TDD |\n| `/brain:execute` | Build according to plans with atomic commits (`--worktree` for isolation) |\n| `/brain:review` | Two-stage review: spec compliance + code quality |\n| `/brain:verify` | 3-level verification against must-haves |\n| `/brain:complete` | Mark phase or milestone done, advance |\n| `/brain:auto` | Autonomous execution across phases |\n\n### Tasks\n| Command | Description |\n|---------|-------------|\n| `/brain:quick` | Quick task — skip the ceremony |\n| `/brain:new-task` | Significant task — full pipeline |\n| `/brain:todo` | Extract and track TODOs from codebase |\n| `/brain:add-tests` | Generate tests from plan requirements |\n\n### Phase Management\n| Command | Description |\n|---------|-------------|\n| `/brain:phase` | List, peek, remove, reorder phases |\n| `/brain:audit` | Integration checker + milestone audit (`--auto-fix` for gap closure) |\n| `/brain:uat` | User Acceptance Testing |\n| `/brain:ship` | Generate PR from verified phase |\n\n### Session\n| Command | Description |\n|---------|-------------|\n| `/brain:progress` | Current status and next action |\n| `/brain:pause` | Save session for later |\n| `/brain:resume` | Restore session context |\n| `/brain:recover` | Detect and recover from crashes |\n| `/brain:health` | Self-diagnosis and auto-repair |\n| `/brain:dashboard` | Live monitoring dashboard (`--browser` for web, `--watch` for auto-refresh) |\n\n### Tools\n| Command | Description |\n|---------|-------------|\n| `/brain:storm` | Real-time brainstorming server |\n| `/brain:design` | Collaborative design server with WebSocket |\n| `/brain:adr` | Architecture decision records |\n| `/brain:map` | Deep codebase analysis |\n| `/brain:debug` | Standalone debugging sessions |\n| `/brain:config` | Configuration management |\n| `/brain:remove` | Remove phase or task |\n\n---\n\n## v3 → v4 Migration Guide\n\n### Breaking Changes\n\n| Area | v3 Behavior | v4 Behavior |\n|------|------------|------------|\n| **Error handling** | `process.exit(1)` with string messages | Structured `BrainError` classes with error codes |\n| **State transitions** | Soft warnings for invalid transitions | Hard-blocked with `FatalError` (use `--force` to override) |\n| **Phase status** | Some aliases accepted (`in progress`) | Canonical lowercase only (`executing`) — auto-migrated |\n| **State writes** | Direct `fs.writeFileSync` | `atomicWriteSync` prevents corruption on crash |\n| **Agent count** | 9 agents | 13 agents (added test-generator, spec-reviewer, requirements-generator, roadmap-architect) |\n| **Config system** | Basic key/value | 47 settings, 10 categories, cross-field validation |\n\n### How to Upgrade\n\n```bash\n# Update to latest version\nnpx brain-dev upgrade\n\n# Re-run detection with new capabilities (Python, Docker, CI/CD, monorepo)\n/brain:detect\n\n# Regenerate hooks and commands\n/brain:init --force\n```\n\n### Error Envelope Format (v4+)\n\nAll errors now return structured envelopes:\n\n```json\n{\n  \"ok\": false,\n  \"error\": {\n    \"code\": \"PHASE_INVALID_STATUS\",\n    \"message\": \"Invalid phase status: 'foo'\",\n    \"recovery\": \"Use --force flag to override\"\n  }\n}\n```\n\n### --force Flag\n\nv6.4+ enforces code review unconditionally. `--force` only bypasses phase-order validation and research gates — it **cannot bypass review or verify gates**:\n\n```\nbrain-dev execute --force               # Skip phase order validation\nbrain-dev plan --force                  # Skip research gate\n```\n\n---\n\n## Tutorial: Build Your First Feature\n\nA step-by-step walkthrough of the brain lifecycle.\n\n### 1. Initialize\n\n```bash\nnpx brain-dev init\n# Output:\n#   [brain] Created .brain/ directory\n#   [brain] Platform: claude-code\n#   [brain] Registered SessionStart hook\n#   [brain] Registered brain commands\n#   [brain] Generated 3 stack commands for Next.js\n#   [brain] Committed: chore: initialize brain\n```\n\n### 2. Detect & Map Your Project\n\n```bash\n/brain:new-project\n# Brain detects your stack (e.g., \"Next.js (typescript) with Testing, Tailwind CSS\")\n# Detects infrastructure: Docker, GitHub Actions CI, Turborepo monorepo\n# Maps your codebase structure and suggests next step\n```\n\n### 3. Start a Story\n\n```bash\n/brain:story \"v1.0 User Authentication\"\n# Brain runs parallel research agents → generates requirements → creates phased roadmap\n# You'll see: REQUIREMENTS.md with REQ-IDs, ROADMAP.md with phases\n```\n\n### 4. Surface Assumptions\n\n```bash\n/brain:assumptions\n# Lists assumptions about implementation approach, dependencies, scope, and risks\n# Review and validate before planning begins\n```\n\n### 5. Discuss Decisions\n\n```bash\n/brain:discuss\n# Brain asks about architectural decisions for the current phase\n# e.g., \"JWT or session-based auth? What token expiry?\"\n# Decisions saved to CONTEXT.md for planner reference\n```\n\n### 6. Plan\n\n```bash\n/brain:plan\n# Creates PLAN-01.md with tasks, dependencies, must_haves\n# Plan checker validates across 8 dimensions\n# Advocate challenges weak points\n```\n\n### 7. Execute\n\n```bash\n/brain:execute\n# Executor builds according to plan with per-task commits\n# Each task: implement → test → commit\n# SUMMARY-01.md documents what was done\n\n# Optional: execute in isolated worktree\n/brain:execute --worktree\n```\n\n### 8. Review\n\n```bash\n/brain:review\n# Pass 1: Spec compliance — does implementation match plan?\n# Pass 2: Code quality — DRY, patterns, best practices\n# SPEC-REVIEW.md + REVIEW.md with findings\n```\n\n### 9. Verify\n\n```bash\n/brain:verify\n# 3-level verification: exists → substantive → wired\n# VERIFICATION.md with pass/fail per must_have\n```\n\n### 10. Complete\n\n```bash\n/brain:complete\n# Marks phase done, advances to next phase\n# /brain:progress shows what's next\n```\n\n### Lifecycle Diagram\n\n```\n┌─────────────┐     ┌─────────────┐     ┌─────────────┐\n│  new-project │────>│    story     │────>│ assumptions  │\n└─────────────┘     └─────────────┘     └──────┬──────┘\n                                                │\n                                        ┌──────▼──────┐\n                                        │   discuss    │\n                                        └──────┬──────┘\n                                                │\n                    ┌─────────────┐     ┌──────▼──────┐\n                    │   complete   │<────│    plan      │\n                    └──────┬──────┘     └──────┬──────┘\n                           │                    │\n                    ┌──────▼──────┐     ┌──────▼──────┐\n                    │   verify     │<────│   execute    │\n                    └──────┬──────┘     └──────┬──────┘\n                           │                    │\n                           │            ┌──────▼──────┐\n                           │<───────────│   review     │\n                           │            └─────────────┘\n```\n\n---\n\n## Architecture\n\n### Modular State Management\n\nBrain's state engine is decomposed into focused modules:\n\n| Module | Responsibility |\n|--------|---------------|\n| `state-io.cjs` | Atomic read/write with crash protection |\n| `state-migration.cjs` | Schema versioning and additive migrations |\n| `state-transitions.cjs` | Phase status validation with transition rules |\n| `state-md.cjs` | Human-readable STATE.md generation |\n| `state-defaults.cjs` | Default state creation and constants |\n| `state.cjs` | Backward-compatible re-export facade |\n| `session-memory.cjs` | Semantic memory: decisions, entities, patterns |\n| `research-scorer.cjs` | 7-dimension research quality scoring |\n| `research-gate.cjs` | Mandatory research depth gate |\n| `plan-scorer.cjs` | 6-dimension plan quality scoring |\n| `test-feedback.cjs` | Closed-loop test result analysis |\n| `wave-planner.cjs` | Wave-aware parallel execution planner |\n| `execution-audit.cjs` | Post-execution quality gate |\n\n### Dynamic Command Loading\n\nCommands declare a `handler` field in the registry. The CLI dispatches directly to the handler module. 39 commands across 6 categories: Setup, Lifecycle, Tasks, Phase Management, Session, Tools.\n\n### Platform\n\nBrain is currently Claude Code-exclusive, with deep integration via settings.json hooks and shell scripts.\n\n---\n\n## Project Structure\n\n```\n.brain/                          # Brain state directory\n├── brain.json                   # State machine + configuration\n├── STATE.md                     # Human-readable state summary\n├── detection.json               # Stack detection cache\n├── REQUIREMENTS.md              # Requirements with REQ-IDs\n├── ROADMAP.md                   # Phased execution roadmap\n├── metrics.json                 # Cost tracking ledger\n├── phases/                      # Phase artifacts\n│   └── 01-setup/\n│       ├── PLAN-01.md           # Execution plan\n│       ├── SUMMARY-01.md        # Execution results\n│       ├── SPEC-REVIEW.md       # Spec compliance review\n│       ├── REVIEW.md            # Code quality review\n│       └── VERIFICATION.md      # Verification results\n├── stories/                     # Milestone archives\n├── designs/                     # Design server outputs\n├── plugins/                     # Installed plugins\n├── debug/                       # Debug sessions\n├── logs/                        # JSONL event logs\n└── audits/                      # Audit reports\n```\n\n---\n\n## Zero Dependencies\n\nBrain is a single npm package with zero runtime dependencies. Just Node.js 22+.\n\n```json\n{\n  \"dependencies\": {}\n}\n```\n\nNo supply chain risk. No transitive vulnerabilities. No `node_modules` bloat.\n\n---\n\n## Requirements\n\n- **Node.js 22+**\n- **Claude Code** (Anthropic's CLI)\n\n---\n\n## License\n\nMIT\n","readmeFilename":"README.md"}