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brainsmatics\n\n`brainsmatics` 是一个面向神经科学数据可视化的 React 组件库，用于构建脑图谱、神经元、血管、医学影像、功能环路和 AI 辅助分析相关的前端应用。\n\n项目提供可复用的 2D 查看组件、3D 脑数据可视化模块、医学图像加载能力、统计图表组件、上传管理组件，以及基于 Ant Design X 的 AI 对话组件。\n\n## 安装\n\n```bash\nnpm install brainsmatics\n```\n\nReact 和 React DOM 是 peer dependencies，需要由业务项目安装：\n\n```bash\nnpm install react react-dom\n```\n\n在项目中导入组件：\n\n```tsx\nimport { BarChart, UserUpload, Atlas, UploadComponent } from \"brainsmatics/STAM\";\nimport \"brainsmatics/style.css\";\n```\n\n## 快速开始\n\n```tsx\nimport React from \"react\";\nimport { BarChart } from \"brainsmatics/STAM\";\nimport \"brainsmatics/style.css\";\n\nexport default function App() {\n  return (\n    <BarChart\n      title=\"脑区信号统计\"\n      xAxisLabel=\"脑区\"\n      yAxisLabel=\"数值\"\n      height={420}\n      data={[\n        { name: \"MOp\", value: 42 },\n        { name: \"SSp\", value: 31 },\n        { name: \"VIS\", value: 26 }\n      ]}\n      onBarClick={(item) => console.log(item)}\n    />\n  );\n}\n```\n\n## 项目可以做什么\n\n`brainsmatics` 可以用于构建神经科学方向的可视化和分析系统，主要能力包括：\n\n- 展示 3D 标准脑图谱。\n- 在同一个 Three.js 场景中展示脑区、核团、血管、神经元等对象。\n- 加载并展示 SWC 神经元形态数据。\n- 将用户上传的数据插入 3D 场景并进行平移、旋转、缩放、调色和透明度调整。\n- 加载 `.tif`、`.tiff` 图像栈，并以体数据方式渲染。\n- 加载 `.nii.gz` 压缩 NIfTI 体数据。\n- 展示 STL、OBJ、FBX、GLB 等 3D 模型。\n- 展示 JSON 格式的线、点、点云、血管、神经元和环路数据。\n- 提供 2D 图像浏览、缩略图、网格视图、双视图对比和多视图布局。\n- 提供柱状图、热力图、雷达图、弦图、桑基图等神经科学分析图表。\n- 支持 TIFF 脑片图像配准相关工作流。\n- 支持 TIFF 图像栈体积分析相关工作流。\n- 提供基于 Ant Design X 的 AI 对话界面，支持 Markdown、工具调用结果和图表结果展示。\n- 支持功能环路分析，包括连接关系、基因表达、突触、单神经元等数据展示。\n\n## 主要导出\n\n### 3D 组件\n\n```tsx\nimport {\n  SideBar,\n  PipeLine,\n  Auxiliary,\n  BottomTabs,\n  Atlas,\n  AtlasSideBar,\n  AtlasBottomTabs,\n  ModalLoader,\n  Modal2DLoader,\n  StlLoader,\n  Swctree,\n  Sections,\n  ShowReglions,\n  Carddata,\n  FunctionLoop,\n  FunctionLoopSwc,\n  AiViewer,\n  UserUpload,\n  UploadComponent,\n  VolumeAnalysis\n} from \"brainsmatics/STAM\";\n```\n\n这些组件主要用于完整的 3D 神经科学工作台。部分组件需要宿主应用提供 Three.js 的 renderer、camera、scene、controls、图谱状态、回调函数或后端接口。\n\n### 2D 组件\n\n```tsx\nimport {\n  GridViewer,\n  NavTree,\n  NaviGation,\n  InfoDiv,\n  TwoViewer,\n  Thumbnail,\n  MulfiViewer,\n  Distribution\n} from \"brainsmatics/STAM\";\n```\n\n这些组件适合用于 2D 数据浏览、图像导航、缩略图展示、对比查看和多视图布局。\n\n### 图表组件\n\n```tsx\nimport {\n  BarChart,\n  HeatmapChart,\n  RadarChart,\n  ChordChart,\n  SankeyChart,\n  ChartViewer\n} from \"brainsmatics/STAM\";\n```\n\n图表组件基于 ECharts，适合展示脑区统计、连接关系、证据矩阵、功能环路结果和分析摘要。\n\n### 通用组件和工具\n\n```tsx\nimport {\n  Header,\n  Button,\n  scene,\n  camera,\n  scale,\n  tranX,\n  tranY,\n  tranZ\n} from \"brainsmatics/STAM\";\n```\n\n工具导出中包含部分 3D 模块共用的全局 Three.js 状态。\n\n## 支持的数据类型\n\n| 数据类型 | 典型用途 |\n| --- | --- |\n| `.tif`、`.tiff` | 2D 脑片配准、3D TIFF 图像栈渲染 |\n| `.nii.gz` | NIfTI 体数据渲染 |\n| `.swc` | 神经元形态和骨架展示 |\n| `.stl`、`.obj`、`.fbx`、`.glb` | 3D 形态模型展示 |\n| `.json` | 点、线、点云、血管、神经元、环路数据 |\n| `.png`、`.jpg`、`.jpeg`、`.gif` | 2D 图像平面和图像序列展示 |\n\n## 地址栏参数\n\n部分 3D 页面支持通过 URL query 参数恢复场景状态或加载数据。\n\n### 通过 URL 加载 TIFF / NIfTI 数据\n\n3D 页面可以通过 `UploadComponent` 读取以下参数，将 URL 数据作为场景文件加载，并支持选中后的位移、旋转、缩放、颜色和亮度等控制：\n\n```text\ntiffDataPath\ntiffInfo\n```\n\n示例：\n\n```text\n?tiffDataPath=/staticresource/data/TIFF/test.tif&tiffInfo=%7B%22min%22%3A%7B%22x%22%3A0%2C%22y%22%3A0%2C%22z%22%3A0%7D%2C%22max%22%3A%7B%22x%22%3A11400%2C%22y%22%3A9000%2C%22z%22%3A14000%7D%2C%22max_resample%22%3A%7B%22x%22%3A1022%2C%22y%22%3A731%2C%22z%22%3A1400%7D%7D\n```\n\n`tiffInfo` 解码后格式如下：\n\n```json\n{\n  \"min\": { \"x\": 0, \"y\": 0, \"z\": 0 },\n  \"max\": { \"x\": 11400, \"y\": 9000, \"z\": 14000 },\n  \"max_resample\": { \"x\": 1022, \"y\": 731, \"z\": 1400 }\n}\n```\n\n`tiffDataPath` 必须是浏览器可以直接 `fetch` 到的 `.tif`、`.tiff`、`.nii` 或 `.nii.gz` 地址。`.nii/.nii.gz` 会按 `NiiGZ` 类型加载；其他情况默认按 `TIFF` 类型加载。\n\n如果 `tiffInfo` 中包含 `min`、`max`、`max_resample`，会用它们推导初始位置和缩放。`tiffInfo` 也可以附加或覆盖场景控制参数，例如：\n\n```json\n{\n  \"file_type\": \"NiiGZ\",\n  \"translateX\": 0,\n  \"translateY\": -1.5,\n  \"translateZ\": 0,\n  \"scaleX\": 1,\n  \"scaleY\": 1,\n  \"scaleZ\": 1,\n  \"resolution\": 10\n}\n```\n\n### 恢复上传到场景中的文件\n\n`UploadComponent` 可以通过以下参数恢复已共享的上传文件：\n\n```text\nuserSceneFiles\n```\n\nTIFF 示例：\n\n```json\n[\n  {\n    \"file_type\": \"TIFF\",\n    \"id\": \"file-id-from-server\",\n    \"original_filename\": \"sample.tif\",\n    \"translateX\": 0,\n    \"translateY\": -1.5,\n    \"translateZ\": 0,\n    \"scaleX\": 1,\n    \"scaleY\": 1,\n    \"scaleZ\": 1,\n    \"resolution\": 10\n  }\n]\n```\n\nNIfTI 示例：\n\n```json\n[\n  {\n    \"file_type\": \"NiiGZ\",\n    \"id\": \"file-id-from-server\",\n    \"original_filename\": \"sample.nii.gz\",\n    \"translateX\": 0,\n    \"translateY\": -1.5,\n    \"translateZ\": 0,\n    \"scaleX\": 1,\n    \"scaleY\": 1,\n    \"scaleZ\": 1,\n    \"resolution\": 10\n  }\n]\n```\n\n组件会通过以下接口读取上传文件：\n\n```text\n/app-api/userDB-api/files/{id}\n```\n\n因此文件需要已经存在于服务端，并且处于共享状态，或者当前浏览器拥有对应的访问 key。\n\n## 后端和运行环境说明\n\n本组件库中有一部分组件是纯前端 UI 组件，也有一部分组件依赖项目后端接口和静态资源。\n\n3D 工作台中常见的后端或静态资源路径包括：\n\n```text\n/app-api/userDB-api/files/{id}\n/app-api/neuron-reg/...\n/staticresource/...\n```\n\n如果在其他项目中集成，需要在业务项目里配置代理或部署规则，确保这些路径能够正确访问。\n\n3D 体数据、图谱和医学影像组件依赖浏览器 WebGL 能力。TIFF 和 NIfTI 渲染路径使用 Three.js 3D texture 或 texture array，推荐使用支持 WebGL2 的现代浏览器。\n\n## 开发\n\n安装依赖：\n\n```bash\nnpm install\n```\n\n启动 Vite 开发服务：\n\n```bash\nnpm run dev\n```\n\n构建组件库：\n\n```bash\nnpm run build\n```\n\n启动 Storybook：\n\n```bash\nnpm run storybook\n```\n\n构建 Storybook：\n\n```bash\nnpm run build-storybook\n```\n\n## 发布\n\n当前包发布到 npm 的包名是：\n\n```text\nbrainsmatics\n```\n\n发布前建议先构建并检查 npm 包内容：\n\n```bash\nnpm run build\nnpm pack --dry-run\n```\n\n使用 npm 发布：\n\n```bash\nnpm publish\n```\n\n也可以使用 Yarn Classic 发布：\n\n```bash\nyarn publish --force\n```\n\n`package.json` 中配置了 `files` 字段，因此 npm 发布时只会包含：\n\n- `dist`\n- `package.json`\n- `README.md`\n- `LICENSE`\n\n这样可以避免把 `.env`、IDE 配置、日志、缓存、源码目录等开发文件发布到 npm。\n\n## 项目结构\n\n```text\nsrc/\n  component/\n    2d/                2D 查看器、图表、导航、缩略图\n    3d/                3D 图谱、上传、AI 对话、体数据、配准模块\n    common/            通用 UI 组件\n    types/             公共 TypeScript 类型\n    util/              公共工具和全局 Three.js 状态\n  stories/             Storybook 示例\n  assets/              字体、图标和静态前端资源\n```\n\n## 技术栈\n\n- React 18\n- TypeScript\n- Vite\n- Ant Design\n- Ant Design X\n- Three.js\n- ECharts\n- GeoTIFF\n- nifti-reader-js\n- Storybook\n\n## 许可证\n\nMIT\n","readmeFilename":"README.md"}