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See gaps, apply fixes selectively with rollback, govern hooks and permissions, and benchmark impact — without breaking existing config.","maintainers":[{"name":"theclaudex","email":"naorpangainoon@gmail.com"}],"readme":"# claudex-setup\n\n> Score your repo's Claude Code setup against 85 checks. See what's missing, apply only what you approve with rollback, and benchmark the impact — without breaking existing config.\n\n[![npm version](https://img.shields.io/npm/v/claudex-setup)](https://www.npmjs.com/package/claudex-setup)\n[![npm downloads](https://img.shields.io/npm/dm/claudex-setup)](https://www.npmjs.com/package/claudex-setup)\n[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](LICENSE)\n\n### What this is\n\n- The **Agentic DX layer for Claude Code** — audit, improve, govern, and benchmark how Claude works with your repo\n- A **Claude Code workflow audit and improvement tool** — not an MCP installer, not a code generator\n- Scores your repo 0-100 across CLAUDE.md, hooks, commands, agents, skills, MCP, security, and more\n- Proposes changes as diffs you review — applies only what you approve, with rollback for every change\n- Includes governance (permission profiles, hook registry, policy packs) and benchmark (isolated before/after)\n\n### What this is NOT\n\n- Not an MCP setup tool (MCP packs are one of 26 features, not the product)\n- Not a code generator or refactoring tool — it configures how Claude works with your repo, not the code itself\n- Not a replacement for hand-crafted CLAUDE.md — generated output is a strong starting point, not a final answer\n- Not a score you should chase blindly — 90/100 with bad code is still bad code\n\n## Quick Start\n\n```bash\nnpx claudex-setup --lite      # Quick beginner scan: top 3 fixes + next command\nnpx claudex-setup              # Audit your project (10 seconds)\nnpx claudex-setup --snapshot   # Save a normalized snapshot under .claude/claudex-setup/\nnpx claudex-setup setup        # Create a starter-safe baseline\nnpx claudex-setup augment      # Repo-aware plan, no writes\nnpx claudex-setup plan         # Export proposal bundles with file previews\nnpx claudex-setup governance   # See permission profiles, packs, and pilot guidance\nnpx claudex-setup governance --out governance.md  # Export a shareable governance report\nnpx claudex-setup benchmark    # Measure before/after in an isolated temp copy\nnpx claudex-setup --threshold 60   # Fail CI if score is below 60\n```\n\nNo install. No config. No dependencies.\n\n## Real Results\n\nTested on 4 real projects — not demos:\n\n| Project | Type | Before | After | Delta |\n|---------|------|--------|-------|-------|\n| CLAUDEX | Research engine, Python | 62 | 90 | **+28** |\n| VTCLE | Marketing automation, FastAPI | 46 | 64 | **+18** |\n| Social | Mobile app, React Native | 40 | 48 | **+8** |\n| Polymiro | Prediction system, Python/Docker | 35 | 48 | **+13** |\n\nMost common gaps found: missing secrets protection, no deny rules, no mermaid diagram, no hooks in settings.\n\n> Scores measured with claudex-setup@1.10.3 on 2026-04-03. Current npm latest: 1.16.1, so exact scores may differ slightly on the newer release.\n>\n> Canonical proof artifacts: [Index](https://github.com/DnaFin/claudex/blob/main/research/proof-artifacts/README.md) | [CLAUDEX trace](https://github.com/DnaFin/claudex/blob/main/research/proof-artifacts/claudex-self-dogfood-proof-trace-2026-04-03.md) | [VTCLE trace](https://github.com/DnaFin/claudex/blob/main/research/proof-artifacts/vtcle-proof-trace-2026-04-03.md) | [Social trace](https://github.com/DnaFin/claudex/blob/main/research/proof-artifacts/social-proof-trace-2026-04-03.md) | [Polymiro trace](https://github.com/DnaFin/claudex/blob/main/research/proof-artifacts/polymiro-proof-trace-2026-04-03.md)\n>\n> Narrative case studies: [VTCLE](https://github.com/DnaFin/claudex/blob/main/research/case-study-vtcle-2026-04-03.md) | [Social](https://github.com/DnaFin/claudex/blob/main/research/case-study-social-2026-04-03.md) | [Polymiro](https://github.com/DnaFin/claudex/blob/main/research/case-study-polymiro-2026-04-03.md)\n\n## What You Get\n\n```\n  claudex-setup audit\n  ═══════════════════════════════════════\n  Detected: React, TypeScript, Docker\n\n  ████████████████░░░░ 78/100\n\n  ✅ Passing\n     CLAUDE.md project instructions\n     Mermaid architecture diagram\n     Hooks (PreToolUse + PostToolUse)\n     Custom slash commands (5 commands)\n     XML constraint blocks\n     Secrets protection configured\n\n  🟡 High Impact\n     CI pipeline configured\n     → Add .github/workflows/ for automated testing\n\n  ⚡ Top 5 Next Actions\n     1. Add CLAUDE.md verification criteria\n        Why: Claude needs an explicit verification loop before handoff\n        Trace: failed-check:verificationLoop | impact:critical | category:quality\n        Risk: high | Confidence: high\n        Fix: Add test/lint/build commands to CLAUDE.md so Claude can verify its own work\n\n     2. Configure safe permissions + deny rules\n        Why: Explicit permissions are the main safety layer for repo writes\n        Trace: failed-check:permissionDeny | impact:high | category:security\n        Risk: medium | Confidence: high\n        Fix: Add permissions.deny rules to block dangerous operations\n\n  Weakest areas:\n      design: none (0/2)\n     devops: none (0/4)\n\n  29/85 checks passing\n  Next command: npx claudex-setup setup\n```\n\nWant the shortest possible first run?\n\n```bash\nnpx claudex-setup --lite\n```\n\nThat prints a compact top-3 quick scan with one clear next command.\n\n## All Commands\n\n| Command | What it does |\n|---------|-------------|\n| `npx claudex-setup` | **Discover** - Score 0-100 against 85 checks |\n| `npx claudex-setup discover` | **Discover** - Alias for audit mode |\n| `npx claudex-setup setup` | **Starter** - Smart CLAUDE.md + hooks + commands + agents |\n| `npx claudex-setup starter` | **Starter** - Alias for setup mode |\n| `npx claudex-setup setup --auto` | **Auto-setup** - No prompts, apply all |\n| `npx claudex-setup augment` | **Augment** - Repo-aware improvement plan, no writes |\n| `npx claudex-setup suggest-only` | **Suggest-Only** - Structured recommendation report, no writes |\n| `npx claudex-setup plan` | **Plan** - Export proposal bundles with previews, rationale, and file-level changes |\n| `npx claudex-setup apply` | **Apply** - Apply ready proposal bundles with rollback + activity artifacts |\n| `npx claudex-setup governance` | **Governance** - Permission profiles, hook registry, policy packs, pilot kit |\n| `npx claudex-setup benchmark` | **Benchmark** - Before/after evidence from an isolated temp copy |\n| `npx claudex-setup interactive` | **Wizard** - Step-by-step guided tour |\n| `npx claudex-setup watch` | **Watch** - Live monitoring with score delta and cross-platform directory fallback |\n| `npx claudex-setup badge` | **Badge** - Generate shields.io badge for README |\n| `npx claudex-setup feedback` | **Feedback** - Record local recommendation outcomes or show outcome summary |\n| `npx claudex-setup deep-review` | **Deep Review** - AI-powered config analysis (Claude Code or API key, selected config only) |\n| `npx claudex-setup insights` | **Insights** - View community aggregate stats |\n\n### Options\n\n| Flag | Effect |\n|------|--------|\n| `--threshold N` | Exit with code 1 if score is below `N` (great for CI) |\n| `--out FILE` | Write JSON or markdown output to a file |\n| `--plan FILE` | Load a previously exported plan file |\n| `--only A,B` | Limit plan/apply to selected proposal ids |\n| `--profile NAME` | Choose a permission profile for write-capable flows |\n| `--mcp-pack A,B` | Merge named MCP packs into generated or patched settings |\n| `--key NAME` | Recommendation key for `feedback` logging |\n| `--status VALUE` | Outcome status: `accepted`, `rejected`, or `deferred` |\n| `--effect VALUE` | Outcome effect: `positive`, `neutral`, or `negative` |\n| `--score-delta N` | Optional observed score delta tied to the feedback event |\n| `--snapshot` | Save a normalized artifact under `.claude/claudex-setup/snapshots/` |\n| `--lite` | Show a short top-3 quick scan with one clear next command |\n| `--dry-run` | Preview apply without writing files |\n| `--verbose` | Show all recommendations (not just critical/high) |\n| `--json` | Machine-readable JSON output (for CI) |\n| `--auto` | Apply setup files without prompts |\n| `--insights` | Enable anonymous usage insights (off by default) |\n\n## Smart CLAUDE.md Generation\n\nNot a generic template. The `setup` command actually analyzes your project:\n\n- **Reads package.json** - includes your actual test, build, lint, dev commands\n- **Reads pyproject.toml** - uses Python project name/description when package.json does not exist\n- **Detects framework** - Next.js Server Components, Django models, FastAPI Pydantic, React hooks\n- **TypeScript-aware** - detects strict mode, adds TS-specific rules\n- **Auto Mermaid diagram** - scans directories and generates architecture visualization (Mermaid diagrams are more token-efficient than prose descriptions, per Anthropic docs)\n- **XML constraint blocks** - adds `<constraints>` and `<verification>` with context-aware rules\n- **Verification criteria** - auto-generates checklist from your actual commands\n- **Safer settings.json** - generated hooks config now includes `acceptEdits` plus deny rules for dangerous or secret-sensitive operations\n\n## Mode Model\n\n- **Discover**: score the repo, surface critical issues, and show the best next actions\n- **Starter**: generate a safe baseline when the repo has little or no Claude setup\n- **Augment**: inspect the current repo and build a structured improvement plan without writing files\n- **Suggest-Only**: same no-write analysis, optimized for sharing or manual review\n- **Governance**: surface permission profiles, shipped hooks, policy packs, and pilot guidance\n- **Benchmark**: prove value on an isolated copy before touching the real repo\n\n## Proposal + Apply Workflow\n\nUse `plan` when you want a file-by-file proposal bundle before any write happens:\n\n```bash\nnpx claudex-setup plan --out claudex-plan.json\n```\n\nEach proposal bundle includes:\n\n- trigger reasons tied to failed checks\n- file previews and diff-style output\n- `create`, `patch`, or `manual-review` classification\n- risk/confidence labels\n\nApply only the bundles you want:\n\n```bash\nnpx claudex-setup apply --plan claudex-plan.json --only claude-md,hooks\n```\n\n`apply` creates rollback manifests and activity artifacts under `.claude/claudex-setup/`, so every applied batch has a paper trail and a create-or-patch rollback path.\n\n## Governance And Pilot Readiness\n\nUse `governance` when the question is \"can we pilot this safely?\" instead of \"what files can you generate?\".\n\n```bash\nnpx claudex-setup governance\nnpx claudex-setup governance --out governance.md\n```\n\nIt exposes:\n\n- permission profiles: `read-only`, `suggest-only`, `safe-write`, `power-user`, `internal-research`\n- hook registry with trigger point, purpose, side effects, risk, and rollback path\n- policy packs for baseline engineering, security-sensitive repos, OSS, and regulated-lite teams\n- 16 domain packs: backend-api, frontend-ui, data-pipeline, infra-platform, oss-library, enterprise-governed, monorepo, mobile, regulated-lite, ecommerce, ai-ml, devops-cicd, design-system, docs-content, security-focused, baseline-general\n- 26 MCP packs: Context7, Next.js devtools, GitHub, PostgreSQL, Playwright, Docker, Notion, Linear, Sentry, Slack, Stripe, Figma, Shopify, Hugging Face, Blender, WordPress, Jira/Confluence, GA4, Search Console, n8n, Zendesk, Infisical, Composio, memory, sequential-thinking, mcp-security\n- a pilot rollout kit with scope, approvals, success metrics, and rollback expectations\n\nUse `--out governance.md` if you want a shareable artifact for leads, platform teams, or security review.\n\n## Domain Packs And MCP Packs\n\n`augment` and `suggest-only` now recommend repo-shaped guidance instead of giving every project the same advice.\n\n- 16 domain packs identify repo shape and recommend relevant modules\n- 26 MCP packs recommend tooling companions matched to your detected domain and stack\n- write-capable flows can merge MCP packs directly into `.claude/settings.json`\n\n```bash\nnpx claudex-setup suggest-only --json\nnpx claudex-setup setup --mcp-pack context7-docs\nnpx claudex-setup apply --plan claudex-plan.json --only hooks --mcp-pack context7-docs,next-devtools\n```\n\n## Benchmark And Evidence\n\nUse `benchmark` to measure the impact of starter-safe improvements without modifying your working repo:\n\n```bash\nnpx claudex-setup benchmark --out benchmark.md\n```\n\nBenchmark mode:\n\n- runs a baseline audit on your repo\n- copies the repo to an isolated temp workspace\n- applies starter-safe artifacts only in the copy\n- reruns the audit and emits before/after deltas, workflow-evidence coverage, a case-study summary, and an executive recommendation\n\nIf you want repeatable evidence artifacts for before/after work, add `--snapshot` to `audit`, `augment`, `suggest-only`, `benchmark`, or `governance`.\n\n```bash\nnpx claudex-setup --snapshot\nnpx claudex-setup augment --snapshot\nnpx claudex-setup benchmark --snapshot\n```\n\nSnapshots are written to `.claude/claudex-setup/snapshots/` with a shared envelope and an `index.json` history file.\n\nIf you want a local-first recommendation loop, record what actually helped:\n\n```bash\nnpx claudex-setup feedback --key permissionDeny --status accepted --effect positive --score-delta 12\nnpx claudex-setup feedback\n```\n\nFeedback stays under `.claude/claudex-setup/outcomes/` and is used only as a local ranking signal. Recommendations with repeated positive outcomes get a measured boost; recommendations with repeated negative or rejected outcomes get pushed down.\n\n`watch` uses native `fs.watch` with recursive directory watches where the platform supports them, and an expanded directory fallback elsewhere. That keeps nested `.claude/` and `.github/` changes visible on Linux too, while staying zero-dependency. Native filesystem watch semantics can still be noisier on very large repos or network filesystems, so the command is best treated as fast local feedback rather than a CI-grade signal.\n\n## Use Inside Claude Code\n\nIf you want the first Claude-native entry point, copy the shipped skill template into your repo.\n\nIf `claudex-setup` is installed locally in `node_modules`, use:\n\n```bash\nmkdir -p .claude/skills/audit-repo\ncp ./node_modules/claudex-setup/content/claude-code/audit-repo/SKILL.md .claude/skills/audit-repo/SKILL.md\n```\n\nIf you are using `npx` only, copy the same file from the GitHub repo at `content/claude-code/audit-repo/SKILL.md`.\n\nThe skill runs `npx claudex-setup --json`, summarizes the score, shows the top next actions, and points to the right next command without applying changes.\n\n## 85 Checks Across 14 Categories\n\nThe exact applicable count can be lower on a given repo because stack-specific checks are skipped when they do not apply.\n\n| Category | Checks | Key items |\n|----------|-------:|-----------|\n| Memory | 8 | CLAUDE.md, architecture, conventions, imports |\n| Quality | 6 | verification loops, test/lint/build, testing strategy |\n| Git Safety | 6 | .gitignore, env protection, attribution, secret detection |\n| Workflow | 12 | commands, skills, rules, agents, snapshots |\n| Security | 7 | permissions, secrets, deny rules, sandbox awareness |\n| Automation | 7 | hook coverage, specificity, session and error hooks |\n| Design | 2 | frontend anti-slop guidance, styling signals |\n| DevOps | 5 | Docker, CI, Terraform, infra signals |\n| Hygiene | 8 | README, changelog, license, env example, version pinning |\n| Performance | 3 | context management, compaction, effort level |\n| MCP & Tools | 4 | servers, Context7, tool companions, env config |\n| Prompting | 6 | constraints, examples, negative rules, style guidance |\n| Features | 2 | channels, worktrees |\n| **Quality Deep** | **9** | **freshness, contradictions, deprecated patterns, maxTurns, $ARGUMENTS, hook specificity** |\n\n## Stack Detection\n\nAuto-detects and tailors output for 30 stacks:\n\n| | |\n|--|--|\n| **Frontend** | React, Vue, Angular, Next.js, Svelte, Astro |\n| **Backend** | Node.js, Python, Django, FastAPI, Express, NestJS, Spring Boot |\n| **Mobile** | React Native, Expo, Flutter, Swift, Kotlin |\n| **Systems** | Rust, Go, Java, Ruby, C++, Bazel, Deno, Bun |\n| **Language** | TypeScript |\n| **Infra** | Docker, Terraform, Kubernetes, Wrangler |\n\n## GitHub Action\n\nAdd to `.github/workflows/claudex.yml`:\n\n```yaml\nname: CLAUDEX Audit\non: [pull_request]\njobs:\n  audit:\n    runs-on: ubuntu-latest\n    steps:\n      - uses: actions/checkout@v4\n      - uses: DnaFin/claudex-setup@v1.16.1\n        with:\n          threshold: 50\n```\n\n## Badge\n\nAdd a readiness badge to your README:\n\n```bash\nnpx claudex-setup badge\n# Output: [![Claude Code Ready](https://img.shields.io/badge/...)](...)\n```\n\n## For Veteran Claude Code Users\n\nAlready have a solid CLAUDE.md and hooks? Two things for you:\n\n### Deep Review (AI-powered)\n\n```bash\nnpx claudex-setup deep-review\n```\n\nClaude reads your actual config and gives specific feedback: what's strong, what has issues, what's missing for your stack. This is an AI-assisted review, not a local heuristic audit. Your config goes to the Anthropic API only when you run this command; we do not receive it.\n\nDeep-review trust boundary:\n\n- sends only selected Claude-facing config surfaces: `CLAUDE.md`, settings, commands, agents, rules, hooks, and package scripts\n- truncates large files before sending\n- redacts embedded secrets before sending\n- treats embedded repo text as untrusted review data, not as instructions to follow\n- keeps all non-`deep-review` flows local\n\n### Quality-Deep Checks\n\nThe v0.4.0 quality-deep checks catch what basic audits miss:\n\n| Check | What it catches |\n|-------|----------------|\n| **Freshness** | CLAUDE.md that doesn't mention modern features (hooks, skills, MCP) |\n| **Conciseness** | CLAUDE.md over 200 lines (wastes tokens every session) |\n| **Contradictions** | Conflicting rules (\"always X\" + \"never X\") |\n| **Hook specificity** | Hooks without matchers that fire on every tool call |\n| **Permission hygiene** | bypassPermissions still enabled in production |\n| **Command flexibility** | Commands without $ARGUMENTS (static, not reusable) |\n| **Agent limits** | Agents without maxTurns (can run forever) |\n| **Security workflow** | No /security-review in your process |\n| **Deprecated patterns** | Old model names, prefill, deprecated API formats |\n\nThese checks evaluate **quality**, not just existence. A well-configured project with stale patterns will surface real improvements.\n\n## Privacy\n\n- **Zero dependencies** - nothing extra to audit\n- **Core flows run locally** - audit, setup, augment, plan, apply, governance, and benchmark run on your machine\n- **Deep review is opt-in** - only `deep-review` sends selected config to Anthropic or your local Claude Code session for analysis\n- **Deep review sanitizes before send** - selected snippets are truncated, secret-redacted, and wrapped as untrusted review data\n- **Benchmark uses an isolated temp copy** - your live repo is not touched\n- **Anonymous insights** - opt-in, no PII, no file contents (enable with `--insights`)\n- **MIT Licensed** - use anywhere\n\n## Backed by Research\n\nEvery check traces to a verified technique from a systematic audit of:\n- All 73 official Claude Code documentation pages\n- 100+ community MCP servers verified via GitHub API\n- Anthropic blog posts and benchmark papers\n- 194 hands-on experiments with real evidence\n\nThe catalog includes 1,107 entries (features, techniques, patterns, tools, stats, and known limitations) — not all are actionable checks. 948 were verified with real evidence. Continuously updated.\n\n**Note:** A hand-crafted CLAUDE.md that reflects your real conventions will always be better than a generated one. This tool is most useful for projects starting from zero, or as a checklist for what you might be missing.\n\n## Requirements\n\n- Node.js 18+\n- macOS, Linux, Windows\n- No global install (npx handles it)\n\n## License\n\nMIT\n","readmeFilename":"README.md"}