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extension provides an interface to expand-collapse nodes.","maintainers":[{"name":"ivisatbilkent","email":"ivisatbilkent@gmail.com"},{"name":"metincansiper","email":"metincansiper@gmail.com"},{"name":"livogindo","email":"353213d0@opayq.com"},{"name":"leonarddrv","email":"leonarddrv95@gmail.com"},{"name":"balcihasan","email":"balcihasan99@gmail.com"},{"name":"mrsfy","email":"mrsfy@outlook.com"}],"readme":"cytoscape-expand-collapse\n================================================================================\n\n**We are in the process of developing a new unified framework for complexity management of graphs. Thus this repositoy is no longer being maintained**\n\n## Description\n\nThis extension provides an interface to expand/collapse nodes and edges for better management of complexity of Cytoscape.js compound graphs, distributed under [The MIT License](https://opensource.org/licenses/MIT).\n\n<p align=\"center\">\n  <img src=\"expand-collapse-extension-demo.gif\" height=\"240\"/>\n  &emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;\n  <img src=\"expand-collapse-extension-edge-demo.gif\" height=\"240\"/>\n</p>\n\nPlease cite the following paper when using this extension:\n\nU. Dogrusoz , A. Karacelik, I. Safarli, H. Balci, L. Dervishi, and M.C. Siper, \"[Efficient methods and readily customizable libraries for managing complexity of large networks](https://doi.org/10.1371/journal.pone.0197238)\", PLoS ONE, 13(5): e0197238, 2018.\n\n## Demo\n\nHere are some demos: **no undo and with custom cue image**, **undoable**, and **collapsing edges and nodes**, respectively:\n<p align=\"center\">\n<a href=\"https://ivis-at-bilkent.github.io/cytoscape.js-expand-collapse/demo/demo.html\" title=\"No undo and with custom cue image\"><img src=\"https://www.cs.bilkent.edu.tr/~ivis/images/demo1.png\" height=42px></a> &emsp;\n<a href=\"https://ivis-at-bilkent.github.io/cytoscape.js-expand-collapse/demo/demo-undoable.html\" title=\"Undoable\"><img src=\"https://www.cs.bilkent.edu.tr/~ivis/images/demo2.png\" height=42px></a> &emsp;\n<a href=\"https://ivis-at-bilkent.github.io/cytoscape.js-expand-collapse/demo/demo-compounds-collapsed.html\" title=\"Collapsing edges and nodes\"><img src=\"https://www.cs.bilkent.edu.tr/~ivis/images/demo3.png\" height=42px></a>\n</p>\n\n## API\n\n* Note that compounds are nodes.\n\n`cy.expandCollapse(options)`\nTo initialize the extension with given options.\n\n`var api = cy.expandCollapse('get')`\nTo get the extension instance after initialization.\n\n* Following functions get options parameter to apply during a particular event unlike the function above.\n\n`api.collapse(nodes, options)`\nCollapse given nodes, extend options with given param.\n\n`api.collapseRecursively(nodes, options)`\nCollapse given nodes recursively, extend options with given param.\n\n`api.collapseAll(options)`\nCollapse all nodes on graph (recursively), extend options with given param.\n\n`api.expand(nodes, options)`\nExpand given nodes, extend options with given param.\n\n`api.expandRecursively(nodes, options)`\nExpand given nodes recursively, extend options with given param.\n\n`api.expandAll(options)`\nExpand all nodes on graph (recursively), extend options with given param.\n\n`api.isExpandable(node)`\nGet whether node is expandable (or is collapsed)\n\n`api.isCollapsible(node)`\nGet whether node is collapsible.\n\n`api.expandableNodes(nodes)`\nGet expandable ones inside given nodes if nodes parameter is not specified consider all nodes\n\n`api.collapsibleNodes(nodes)`\nGet collapsible ones inside given nodes if nodes parameter is not specified consider all nodes\n\n`api.setOptions(options)`\nResets the options to the given parameter.\n\n`api.setOption(name, value)`\nSets the value of the option given by the name to the given value.\n\n`api.extendOptions(options)`\nExtend the current options with the given options.\n\n`api.getCollapsedChildren(node)`\nGet the children of the given collapsed node which are removed during collapse operation\n\n`api.getCollapsedChildrenRecursively(node)`\nGet collapsed children recursively including nested collapsed children. Returned value includes edges and nodes, use selector to get edges or nodes.\n\n`api.getAllCollapsedChildrenRecursively()`\nGet collapsed children of all collapsed nodes recursively. Returned value includes edges and nodes, use selector to get edges or nodes.\n\n`api.clearVisualCue()`\nForces the visual cue to be cleared. It is to be called in extreme cases.\n\n`api.enableCue()`\nEnable rendering of visual cue.\n\n`api.disableCue()`\nDisable rendering of visual cue.\n\n`api.getParent(nodeId)`\nGet the parent of a node given its node id. Useful to reach parent of a node removed because of collapse operation.\n\n`api.collapseEdges(edges,options)`\nCollapse the given edges if all the given edges are between same two nodes and number of edges passed is at least 2. Does nothing otherwise.\n\n` api.expandEdges(edges){ `\nExpand the given collapsed edges\n\n`api.collapseEdgesBetweenNodes(nodes, options)`\nCollapse all edges between the set of given nodes. \n\n`api.expandEdgesBetweenNodes(nodes)`\nExpand all collapsed edges between the set of given nodes\n\n`api.collapseAllEdges(options)`\nCollapse all edges in the graph.\n\n`api.expandAllEdges()`\nExpand all edges in the graph.\n\n`api.loadJson(jsonStr)`\nLoad elements from JSON string.\n\n`api.saveJson(elems, filename)`\nReturn elements in JSON format and saves them to a file if a file name is provided via `filename` parameter. Default value for `elems` is all the elements.\n\n## Events\nNotice that following events are performed for *each* node that is collapsed/expanded. Also, notice that any post-processing layout is performed *after* the event.\n\n`cy.nodes().on(\"expandcollapse.beforecollapse\", function(event) { var node = this; ... })` Triggered before a node is collapsed\n\n`cy.nodes().on(\"expandcollapse.aftercollapse\", function(event) { var node = this; ... })` Triggered after a node is collapsed\n\n`cy.nodes().on(\"expandcollapse.beforeexpand\", function(event) { var node = this; ... })` Triggered before a node is expanded\n\n`cy.nodes().on(\"expandcollapse.afterexpand\", function(event) { var node = this; ... })`  Triggered after a node is expanded\n\n`cy.edges().on(\"expandcollapse.beforecollapseedge\", function(event) { var edge = this; ... })` Triggered before an edge is collapsed\n\n`cy.edges().on(\"expandcollapse.aftercollapseedge\", function(event) { var edge = this; ... })` Triggered after an edge is collapsed\n\n`cy.edges().on(\"expandcollapse.beforeexpandedge\", function(event) { var edge = this; ... })` Triggered before an edge is expanded\n\n`cy.edges().on(\"expandcollapse.afterexpandedge\", function(event) { var edge = this; ... })`  Triggered after an edge is expanded\n\nAll these events can also be listened as [cytoscape.js core events](https://js.cytoscape.org/#cy.on)\ne.g. \n\n`cy.on(\"expandcollapse.afterexpandedge\", function(event) { var elem = event.target; ... })`\n\n## Default Options\n```javascript\n    var options = {\n      layoutBy: null, // to rearrange after expand/collapse. It's just layout options or whole layout function. Choose your side!\n      // recommended usage: use cose-bilkent layout with randomize: false to preserve mental map upon expand/collapse\n      fisheye: true, // whether to perform fisheye view after expand/collapse you can specify a function too\n      animate: true, // whether to animate on drawing changes you can specify a function too\n      animationDuration: 1000, // when animate is true, the duration in milliseconds of the animation\n      ready: function () { }, // callback when expand/collapse initialized\n      undoable: true, // and if undoRedoExtension exists,\n\n      cueEnabled: true, // Whether cues are enabled\n      expandCollapseCuePosition: 'top-left', // default cue position is top left you can specify a function per node too\n      expandCollapseCueSize: 12, // size of expand-collapse cue\n      expandCollapseCueLineSize: 8, // size of lines used for drawing plus-minus icons\n      expandCueImage: undefined, // image of expand icon if undefined draw regular expand cue\n      collapseCueImage: undefined, // image of collapse icon if undefined draw regular collapse cue\n      expandCollapseCueSensitivity: 1, // sensitivity of expand-collapse cues\n      edgeTypeInfo: \"edgeType\", // the name of the field that has the edge type, retrieved from edge.data(), can be a function, if reading the field returns undefined the collapsed edge type will be \"unknown\"\n      groupEdgesOfSameTypeOnCollapse : false, // if true, the edges to be collapsed will be grouped according to their types, and the created collapsed edges will have same type as their group. if false the collapased edge will have \"unknown\" type.\n      allowNestedEdgeCollapse: true, // when you want to collapse a compound edge (edge which contains other edges) and normal edge, should it collapse without expanding the compound first\n      zIndex: 999 // z-index value of the canvas in which cue ımages are drawn\n    };\n```\n\n## Default Undo/Redo Actions\n`ur.do(\"collapse\", { nodes: eles, options: opts)` Equivalent of eles.collapse(opts)\n\n`ur.do(\"expand\", { nodes: eles, options: opts)` Equivalent of eles.expand(opts)\n\n`ur.do(\"collapseRecursively\", { nodes: eles, options: opts)` Equivalent of eles.collapseRecursively(opts)\n\n`ur.do(\"expandRecursively\", { nodes: eles, options: opts)` Equivalent of eles.expandRecursively(opts)\n\n`ur.do(\"collapseAll\", { options: opts)` Equivalent of cy.collapseAll(opts)\n\n`ur.do(\"expandAll\", { options: opts })` Equivalent of cy.expandAll(opts)\n\n`ur.do(\"collapseEdges\", { edges: eles, options: opts})` Equivalent of eles.collapseEdges(opts)\n\n`ur.do(\"expandEdges\", { edges: eles})` Equivalent of eles.expandEdges()\n\n`ur.do(\"collapseEdgesBetweenNodes\", { nodes: eles, options: opts})` Equivalent of eles.collapseEdgesBetweenNodes(opts)\n\n`ur.do(\"expandEdgesBetweenNodes\", { nodes: eles})` Equivalent of eles.expandEdgesBetweenNodes()\n\n`ur.do(\"collapseAllEdges\", {options: opts)}` Equivalent of cy.collapseAllEdges(opts)\n\n`ur.do(\"expandAllEdges\")`Equivalent of cy.expandAllEdges()\n\n\n## Elements Style\n\n * Collapsed nodes have 'cy-expand-collapse-collapsed-node' class.\n * Meta edges (edges from/to collapsed nodes) have 'cy-expand-collapse-meta-edge' class.\n * Collapsed edges have 'cy-expand-collapse-collapsed-edge' class.\n * Collapsed edges data have 'directionType' field which can be either:\n    - 'unidirection' if all the edges that are collapsed into this edge have the same direction (all have same source and same target) \n      or \n    - 'bidirection' if  the edges that are collapsed into this edge have different direction (different target and/or source)\n * Collapsed edges data have a field that holds the type, the field name is as defined in options but if it is not defined in options or was defined as a function it will be named 'edgeType'\n\n \n\n## Dependencies\n\n * Cytoscape.js ^3.3.0\n * cytoscape-undo-redo.js(optional) ^1.0.1\n * cytoscape-cose-bilkent.js(optional/suggested for layout after expand/collapse) ^4.0.0\n\n\n## Usage instructions\n\nDownload the library:\n * via npm: `npm install cytoscape-expand-collapse`,\n * via bower: `bower install cytoscape-expand-collapse`, or\n * via direct download in the repository (probably from a tag).\n\n`require()` the library as appropriate for your project:\n\nCommonJS:\n```js\nvar cytoscape = require('cytoscape');\nvar expandCollapse = require('cytoscape-expand-collapse');\n\nexpandCollapse( cytoscape ); // register extension\n```\n\nAMD:\n```js\nrequire(['cytoscape', 'cytoscape-expand-collapse'], function( cytoscape, expandCollapse ){\n  expandCollapse( cytoscape ); // register extension\n});\n```\n\nPlain HTML/JS has the extension registered for you automatically, because no `require()` is needed.\n\n\n## Build targets\n\n* `npm run build` : Build `./src/**` into `cytoscape-expand-collapse.js` in production environment and minimize the file.\n* `npm run build:dev` :  Build `./src/**` into `cytoscape-expand-collapse.js` in development environment without minimizing the file.\n\n## Publishing instructions\n\nThis project is set up to automatically be published to npm and bower.  To publish:\n\n1. Build the extension : `npm run build`\n1. Commit the build : `git commit -am \"Build for release\"`\n1. Bump the version number and tag: `npm version major|minor|patch`\n1. Push to origin: `git push && git push --tags`\n1. Publish to npm: `npm publish .`\n1. If publishing to bower for the first time, you'll need to run `bower register cytoscape-expand-collapse https://github.com/iVis-at-Bilkent/cytoscape.js-expand-collapse.git`\n\n\n## Team\n\n  * [Hasan Balci](https://github.com/hasanbalci), [Yusuf Canbaz](https://github.com/canbax), [Ugur Dogrusoz](https://github.com/ugurdogrusoz) of [i-Vis at Bilkent University](http://www.cs.bilkent.edu.tr/~ivis) and [Metin Can Siper](https://github.com/metincansiper) of the Demir Lab at [OHSU](http://www.ohsu.edu/)\n\n## Alumni\n\n  * [Alper Karacelik](https://github.com/alperkaracelik), [Ilkin Safarli](https://github.com/kinimesi), [Nasim Saleh](https://github.com/nasimsaleh), [Selim Firat Yilmaz](https://github.com/mrsfy)\n","readmeFilename":"README.md"}