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Cortex — multi-repo orchestration platform for Genius Team projects","maintainers":[{"name":"b3nw3","email":"benjamin@w3art.io"}],"readme":"# 🧠 Genius Cortex\n\n**Multi-repo orchestration for vibe coders.**\n\nYour AI coding toolkit manages one project at a time. Cortex manages all of them.\n\n## What it does\n\n- **See all your projects** — versions, health scores, last activity\n- **Shared behaviors** — coding habits that follow you everywhere (\"prove before fix\", \"post-fix audit\")\n- **Cross-project memory** — knowledge captured in one project, available in all\n- **Project factory** — new project in 30 seconds (template → GitHub → GT installed → Claude launched)\n- **Secrets vault** — encrypted API keys, injected per-project\n- **AI tool watch** — Claude Code updated? Cortex tells you.\n\n## Install\n\n```bash\n# One-liner (recommended)\nbash <(curl -fsSL https://raw.githubusercontent.com/w-3-art/genius-cortex/main/install.sh)\n\n# Or manual\ngit clone https://github.com/w-3-art/genius-cortex.git ~/.genius-cortex-cli\ncd ~/.genius-cortex-cli && npm install && npm link\n\n# Then initialize\ncortex init\n```\n\n## Uninstall\n\nCortex ships a command that reverses its in-place edits for you:\n\n```bash\ncortex uninstall             # detach from Claude Code, keep your data + vault\ncortex uninstall --purge-data  # ALSO delete ~/.genius-cortex — ⚠️ destroys the vault (asks first)\n```\n\n`cortex uninstall` removes, non-destructively (each edited file is backed up to a\n`.bak-*` sibling first):\n\n- the `\"genius-cortex\"` entry under `mcpServers` in `~/.claude.json` — your other\n  MCP servers are left untouched;\n- the Cortex-managed blocks in `~/.claude/CLAUDE.md` (behaviors / rules /\n  `cortex:start…cortex:end`) — the rest of your file is preserved;\n- the Cortex `SessionStart` hook in `~/.claude/settings.json`, so it no longer\n  fires against deleted files.\n\nIt never deletes the desktop app or the npm package (they are outside its reach),\nand it only purges `~/.genius-cortex` — which holds your **encrypted vault of\nsecrets**, loops, signals, memory and config — when you pass `--purge-data` and\nconfirm. After running it, finish up by hand with the steps it prints:\n\n```bash\n# 1. Remove the CLI\nnpm rm -g genius-cortex          # if installed via the one-liner (global npm)\n# or, for the manual/dev install:  cd ~/.genius-cortex-cli && npm unlink -g && cd .. && rm -rf ~/.genius-cortex-cli\n\n# 2. Remove the desktop app (macOS)\nrm -rf \"/Applications/Genius Cortex.app\"\n\n# 3. If you did NOT use --purge-data and want a clean slate — ⚠️ DESTROYS the vault\nrm -rf ~/.genius-cortex\n```\n\n## Commands\n\n```\ncortex init          — Set up Cortex (scan repos, install behaviors)\ncortex scan          — Find Genius Team repos\ncortex status        — See all projects + versions\ncortex upgrade       — Update GT in your repos\ncortex behaviors     — Manage coding behaviors (7 starters included)\ncortex rules         — Rules you NEVER break (enforced via CC hooks)\ncortex memory        — Cross-project knowledge store\ncortex glossary      — Shared vocabulary\ncortex personas      — Client/project context profiles\ncortex templates     — Project starters (SaaS, Landing, API, Mobile)\ncortex create        — New project from template\ncortex vault         — Encrypted secrets management\ncortex health        — Project health scores (0-100)\ncortex search        — Search code across all repos\ncortex codebits      — Reusable code snippets\ncortex watch         — AI tool news feed\ncortex sessions      — Session history\ncortex inject        — Push behaviors + rules into Claude Code\ncortex uninstall     — Detach from Claude Code (optionally --purge-data)\n```\n\n## Behaviors\n\nCortex ships with 7 starter behaviors:\n\n| Behavior | What it does |\n|----------|-------------|\n| prove-before-fix | Never fix based on assumptions. Read → Reproduce → Identify → Fix. |\n| post-fix-audit | After every fix: re-test, check regressions, review diff. |\n| verify-before-code | Read existing code before writing new code. |\n| no-rush-quality | Quality over speed. Always. |\n| cumulative-feedback | New feedback adds to previous. Never replaces. |\n| read-before-write | Read the file/tests/README before editing. |\n| minimal-change | Change only what needs to change. |\n\nRun `cortex behaviors --inject` to activate them in every Claude Code session.\n\n## How it works\n\nCortex writes to `~/.claude/CLAUDE.md` (user-level). Claude Code loads this file in every session, on every project. Your behaviors, rules, and glossary are always active.\n\n## MCP server\n\nCortex exposes 27 tools to Claude Code over stdio (`cortex mcp --start`), built on the official `@modelcontextprotocol/sdk` and targeting the **stable MCP spec `2025-11-25`**. Tool names and schemas are stable; clients configured against them keep working across upgrades. The `2026-07-28` RC (stateless core, extensions, tasks, MCP Apps) will be adopted after its release date without breaking the current tool contract. The 6 `cortex_loop_*` tools (register / heartbeat / report / kill / list / stats) are the loop control plane (LP-06/LP-07): every Genius Team loop registers here, heartbeats each iteration, obeys the kill switch, and reports cost-per-accepted-change for budget enforcement.\n\nThe 2 `cortex_loop_signal_*` tools (emit / poll) are the inter-loop signal bus (LP-10) — what makes loops compose. A loop that hits something outside its own blast radius emits a typed signal `{id, sourceLoop, domain, kind, payload, ts, consumedBy[]}` with kind `finding | blocker | handoff | budget-alert`; loops that declared they listen to that domain (see the `## Signals` section of the CONTRACT.md template in genius-team's `genius-goal-contract`) poll it filtered by domain/repo, with dedupe — each signal is delivered at most once per consumer via `consumedBy`. Every emission and consumption lands in the append-only global log `~/.genius-cortex/loop-signals.jsonl`, browsable with `cortex loops --signals` (add `--json` for machines). Past a size/line threshold the log is compacted: `consumedBy` is a per-consumer dedupe advisory, never a suppression criterion, so a signal is never dropped just for having been consumed. Never-consumed signals are kept forever (a future loop may still pick them up) and the `CORTEX_SIGNALS_KEEP_RECENT` most recent signals (default 5000) are kept regardless of consumption. **Guarantee:** a consumer more than `KEEP_RECENT` signals behind may miss a signal that was already consumed by another consumer — raise `CORTEX_SIGNALS_KEEP_RECENT` if your loops can lag further.\n\nThe Genius Store tools (`cortex_skill_list` / `_get` / `_route` / `_card`) enforce a supply-chain policy on every served skill: `cortex_skill_card` exposes owner-qualified provenance (`@owner/slug`), declared permissions, and a sha256 checksum over `SKILL.md` + references; a security lint flags hidden Unicode/bidi, exfiltration (`curl|sh`, secret leaks, reverse shells), crypto miners, and commission-fraud wallet swaps; and a quarantined skill stays listed but is refused by `cortex_skill_get` until vetted. Run `cortex doctor` for the audit and `cortex quarantine` to manage it. See [`docs/SKILL-SUPPLY-CHAIN.md`](docs/SKILL-SUPPLY-CHAIN.md).\n\nThe vault never exposes secret values through any tool or API surface — only key *names* are listable — and `test/vault-no-leak.test.ts` (part of `npm test`) locks that contract. See the ecosystem-wide telemetry/privacy policy in [`docs/TELEMETRY-PRIVACY.md`](docs/TELEMETRY-PRIVACY.md).\n\n## Security\n\nFound a vulnerability? Do not open a public issue — email **benjamin@w3art.io**. Scope, response targets, and safe harbor: [SECURITY.md](SECURITY.md).\n\n## Requirements\n\n- Node.js 20.11+ (< 25)\n- [Genius Team](https://github.com/w-3-art/genius-team) installed on your projects\n- Claude Code (for hook integration)\n\n## Claude Code compatibility\n\nCortex behaviors and the Genius Store MCP tools attach to your Claude Code sessions, and `cortex watch` surfaces new Claude Code releases. This table is what those sessions run against — verified **2026-07-05** against official docs ([Claude Code CHANGELOG](https://github.com/anthropics/claude-code/blob/main/CHANGELOG.md) · [Models overview](https://docs.claude.com/en/docs/about-claude/models/overview); latest Claude Code 2.1.201).\n\n| Model | API ID | Context | Price in / out (per MTok) |\n|-------|--------|---------|---------------------------|\n| Opus 4.8 | `claude-opus-4-8` | 1M tokens | $5 / $25 |\n| Sonnet 5 | `claude-sonnet-5` | 1M tokens | $3 / $15 — intro **$2 / $10 through 2026-08-31** |\n| Fable 5 | `claude-fable-5` | 1M tokens | $10 / $50 |\n| Haiku 4.5 | `claude-haiku-4-5` | 200k tokens | $1 / $5 |\n\n- **Sonnet 5 is the default Claude Code model** (native 1M context) since Claude Code **2.1.197**.\n- **Tokenizer drift:** Sonnet 5 / Opus 4.8 / Fable 5 use the Opus-4.7 tokenizer — the same text produces **~30% more tokens** than pre-4.7 models (content-dependent). Factored into the `cortex_loop_*` cost-per-accepted-change budgets.\n- **Agents (Claude Code 2.1.198):** the `/agents` wizard was removed (manage subagents by asking Claude or editing `.claude/agents/` directly); background sessions fire `agent_needs_input` / `agent_completed` Notification hooks; worktree agents commit/push/open a draft PR on completion; team agents report `failed` to the lead. The loop control plane observes these lifecycle states.\n\n## License\n\nMIT\n\n---\n\nBuilt with Genius Team. Open source.\n","readmeFilename":"README.md","homepage":"https://genius.w3art.io/cortex.html","repository":{"type":"git","url":"git+https://github.com/w-3-art/genius-cortex.git"},"author":{"name":"w3art"},"bugs":{"url":"https://github.com/w-3-art/genius-cortex/issues"}}