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component for graph genome visualization","maintainers":[{"name":"cmdcolin","email":"colin.diesh@gmail.com"}],"readme":"# graphgenomeviewer\n\n## Install\n\nThe graphgenomeviewer NPM module is a React component that can be installed with\nyarn or npm\n\n    yarn add graphgenomeviewer\n\n## Usage with React\n\n```typescript\nimport {Graph} from 'graphgenomeviewer'\n\nfunction App() {\n  return (\n    <Graph\n      graph={{\n        nodes: [\n          { id: 'id1', length: 5000 },\n          { id: 'id2', length: 10000 },\n        ],\n        links: [{ source: 'id1', target: 'id2', id: 'edge1' }],\n      }}\n      width={800}\n      height={600}\n    />\n  )\n}\n```\n\nor with helper that fetches a GFA file and parses it\n\n```typescript\nimport {GFAGraph} from 'graphgenomeviewer'\n\nfunction App() {\n  return (\n    <GFAGraph\n      url=\"myfile.gfa\"\n      width={800}\n      height={600}\n\n    />\n  )\n}\n```\n\n## API\n\nHere are all the props for the Graph component\n\n```typescript\nfunction Graph({\n  graph,\n  drawPaths = false,\n  drawLabels = false,\n  colorScheme = 'Rainbow',\n  chunkSize = 1000,\n  linkSteps = 10,\n  sequenceThickness = 10,\n  linkThickness = 2,\n  theta = 0.9,\n  strengthCenter = -50,\n  width = 2000,\n  height = 1000,\n  onFeatureClick = () => {},\n}: {\n  graph: Graph\n  drawPaths?: boolean\n  drawLabels?: boolean\n  colorScheme?: string\n  width?: number\n  height?: number\n  chunkSize?: number\n  linkSteps?: number\n  sequenceThickness?: number\n  linkThickness?: number\n  theta?: number\n  strengthCenter?: number\n  onFeatureClick?: (arg?: Record<string, unknown>) => void\n}) {\n  /*...*/\n}\n```\n\nThe GFAGraph everything is the same except you use either\n\n- a url to a GFA file supplied to the url prop\n- a string of GFA data supplied to the data prop\n\n```typescript\nfunction GFAGraph({\n  url,\n  data,\n  drawPaths = false,\n  drawLabels = false,\n  colorScheme = 'Rainbow',\n  chunkSize = 1000,\n  linkSteps = 10,\n  sequenceThickness = 10,\n  linkThickness = 2,\n  theta = 0.9,\n  strengthCenter = -50,\n  width = 2000,\n  height = 1000,\n  onFeatureClick = () => {},\n}: {\n  url: string\n  data: string\n  drawPaths?: boolean\n  drawLabels?: boolean\n  colorScheme?: string\n  width?: number\n  height?: number\n  chunkSize?: number\n  linkSteps?: number\n  sequenceThickness?: number\n  linkThickness?: number\n  theta?: number\n  strengthCenter?: number\n  onFeatureClick?: (arg?: Record<string, unknown>) => void\n}) {\n  /*...*/\n}\n```\n\nthe Graph type (used by the \"Graph\" component and not \"GFAGraph\" since GFAGraph\njust builds this internally is as follows\n\n```typescript\n\nexport interface Path { name: string path: string }\n\nexport interface Node { id: string sequence?: string tags?: Record<string, unknown> cigar?: string length?: number }\n\nexport interface Graph { nodes: Node[] links: Link[] paths?: Path[] }\n\n\n```\n","readmeFilename":"README.md"}