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— one governed graph for AI agents: GraphQL + MCP over your databases, files, APIs, and code","maintainers":[{"name":"dosco","email":"vicram@gmail.com"}],"readme":"# GraphJin — One Governed Graph for Your AI Agents\n\n[![Apache 2.0](https://img.shields.io/github/license/dosco/graphjin.svg?style=for-the-badge)](https://github.com/dosco/graphjin/blob/master/LICENSE)\n[![NPM Package](https://img.shields.io/npm/v/graphjin?style=for-the-badge)](https://www.npmjs.com/package/graphjin)\n[![Docker Pulls](https://img.shields.io/docker/pulls/dosco/graphjin?style=for-the-badge)](https://hub.docker.com/r/dosco/graphjin/tags)\n[![Discord Chat](https://img.shields.io/discord/628796009539043348.svg?style=for-the-badge&logo=discord)](https://discord.gg/6pSWCTZ)\n[![GoDoc](https://img.shields.io/badge/godoc-reference-5272B4.svg?style=for-the-badge&logo=go)](https://pkg.go.dev/github.com/dosco/graphjin/core/v3)\n[![GoReport](https://goreportcard.com/badge/github.com/gojp/goreportcard?style=for-the-badge)](https://goreportcard.com/report/github.com/dosco/graphjin/core/v3)\n\nGraphJin is a compiler and runtime that gives AI agents one governed graph over the systems a real company already has: databases, warehouses, files, source code, workflows, metadata, and security policy. Instead of handing an agent raw credentials and hoping it guesses correctly, GraphJin exposes that graph through GraphQL + MCP: the agent discovers before acting, validates queries, runs approved work, observes runtime status — and every answer is checked against an execution ledger before it leaves the server.\n\nIt is not only for agents. GraphJin is still a high-performance GraphQL-to-database compiler, Go library, standalone API service, REST/OpenAPI gateway, and real-time subscription server. The agent use case is where everything comes together: the same compiler that serves your apps can also give AI a smart, auditable way to work across data, code, and operations.\n\nWorks with PostgreSQL, MySQL, MongoDB, SQLite, Oracle, MSSQL, Snowflake, Redshift, BigQuery, Apache Cassandra / Amazon Keyspaces, S3/GCS/local files, CodeSQL source indexes - and models from Claude/GPT-4 to local 7B models.\n\n## Why GraphJin For Agents\n\n- **A built-in agent, one call away** - POST one instruction to `/api/v1/agent` (or call the `ask_graphjin_agent` MCP tool) and GraphJin runs the discovery loop itself - as the caller, under the caller's permissions - and returns a typed, evidence-backed answer. See [Server-Side Agent](#server-side-agent).\n- **One governed surface for many systems** - Query operational databases, warehouses, MongoDB, object stores, local files, CodeSQL source indexes, workflows, and GraphJin system roots through GraphQL and MCP.\n- **Smart discovery before action** - Agents start with `query_catalog(search: \"<user instruction>\")`, `graphql_help`, relationship evidence, examples, config recipes, and safety notes before writing or running queries.\n- **Guarded action, not raw access** - Source-mode access, query allow-lists, read-only boundaries, policy-aware MCP tools, local encrypted secrets, and `gj_config` preview/apply keep changes auditable.\n- **Operational awareness** - `gj_security`, `gj_runtime`, and the built-in console expose policy and bounded runtime status so agents can check what is safe before they act.\n- **Standing questions, not just answers** - Hand a cursor-paginated subscription to `gj_watch` and GraphJin keeps answering it under the owner's permissions, resumes from persisted cursors across restarts, treats absence as a first-class event, and files what it finds in a durable inbox (`gj_watch_event`), a webhook, or a workflow. Evaluation runs on database polls, not model calls - a model writes the watch once, and nothing calls one again unless you turn on optional per-watch triage. See [Watches](#watches-and-standing-questions).\n- **Durable memory** - Saved queries, fragments, and workflows live in the owner-scoped `gj_artifacts` store. Normal watches are durable by default; explicit ephemeral watches use TTL leases.\n\n## Installation\n\n**npm (all platforms)**\n```bash\nnpm install -g graphjin\n```\n\n**macOS (Homebrew)**\n```bash\nbrew install dosco/graphjin/graphjin\n```\n\n**Windows (Scoop)**\n```bash\nscoop bucket add graphjin https://github.com/dosco/graphjin-scoop\nscoop install graphjin\n```\n\n**Linux**\n\nDownload .deb/.rpm from [releases](https://github.com/dosco/graphjin/releases)\n\n**Docker**\n```bash\ndocker pull dosco/graphjin\n```\n\n**Docker — as an agent environment**\n\nThe same binary also ships as a graded environment for training and evaluating\nagents. It boots ready with nothing mounted: the demo world and a 113-task\nverified suite are built in.\n\n```bash\ndocker run -d -p 8090:8090 --tmpfs /tmp:size=1g dosco/graphjin:env-latest\n```\n\n`/health` says what it is — build, suite fingerprint, dataset fingerprint,\nreward contract, and whether the suite matches the world it is served on.\n`/tmp` must be writable: each world provisions its own database there.\n\nSee [the environment docs](https://graphjin.com/environment/quickstart/) for\nthe full story.\n\n## Try It Now\n\nOne command, no clone, no Docker. The binary ships with a built-in demo — a\nSaaS company ops app (accounts, subscriptions, invoices, support tickets) on\nSQLite with seeded data, saved queries, and workflows:\n\n```bash\ngraphjin serve --demo\n```\n\nThe demo project is extracted to `./graphjin-demo`, and its state lives under\n`./graphjin-demo/demo/`. Delete the `demo/` folder to reset the data, or\ndelete `./graphjin-demo` entirely for a fresh copy. You'll see output like\nthis:\n\n```\nGraphJin started\n───────────────────────\n  Web UI:      http://localhost:8083/\n  GraphQL:     http://localhost:8083/api/v1/graphql\n  REST API:    http://localhost:8083/api/v1/rest/\n  Workflows:   http://localhost:8083/api/v1/workflows/<name>\n  MCP:         http://localhost:8083/api/v1/mcp\n```\n\n**Ask the built-in agent**\n\nWith a model API key in `./.env` (`OPENAI_API_KEY`, `ANTHROPIC_API_KEY`, or `GOOGLE_APIKEY`), the same command switches into agentic mode and enables GraphJin's built-in agent - one instruction in, a typed, evidence-backed answer out:\n\n```bash\ncurl -sS localhost:8083/api/v1/agent \\\n  -H 'content-type: application/json' \\\n  -d '{\"instruction\": \"Which account is most at risk of churning?\"}'\n```\n\nAnswers come back as `{status, answer, data, evidence, actions, next}`, grounded by server-side protocol guards. You can also chat with it in the built-in web console at `localhost:8083/agent` — it streams every tool call live as it works. See [Server-Side Agent](#server-side-agent) below, [AGENTIC.md](AGENTIC.md#server-side-agent), and [graphjin.com/agentic/server-agent](https://graphjin.com/agentic/server-agent/).\n\n**More demo verticals**\n\nThe bigger demos live in the repo — clone it and pass `--path`:\n\n```bash\ngit clone https://github.com/dosco/graphjin\ncd graphjin\ngraphjin serve --demo --path examples/webshop          # classic GraphQL starter (Postgres)\ngraphjin serve --demo --path examples/coffee-roastery  # flagship agentic demo (Postgres + BigQuery-emu + CodeSQL)\n```\n\nEach demo keeps its state under `<path>/demo/` and reuses it on later starts.\nA MySQL corrugated-box plant with JWT roles and a PCB fab spanning Postgres +\nSnowflake-emu + MongoDB + a file source + an OpenAPI supplier API live in\n[examples/](examples/README.md), each with an end-to-end smoke suite\n(`make smoke-all` runs them all). The full tour is at\n<https://graphjin.com/start/demos/>.\n\n## Add GraphJin To Your AI Client\n\n### Local / Dev\n\nUse GraphJin's helper when you want one command that normalizes the URL, probes\nauth, and installs the right Codex or Claude config:\n\n```bash\ngraphjin mcp add codex\ngraphjin mcp add claude\ngraphjin mcp add all http://localhost:8080\n```\n\nDefaults are `client=codex`, `server=http://localhost:8080`, and project scope.\nThe command normalizes the server to `http://localhost:8080/api/v1/mcp`. Local\nnon-TLS HTTP is correct for loopback development; hosted servers should use\nHTTPS.\n\nIf you prefer native client commands, add GraphJin's Streamable HTTP endpoint\ndirectly:\n\n```bash\ncodex mcp add graphjin --url http://localhost:8080/api/v1/mcp\nclaude mcp add --transport http graphjin http://localhost:8080/api/v1/mcp\n```\n\nGraphJin's `/api/v1/mcp` endpoint is Streamable HTTP, so Claude should use\n`--transport http` for GraphJin. SSE is only for older/custom MCP servers.\n\nUse `--global` when you want the MCP connection available outside the current project:\n\n```bash\ngraphjin mcp add codex --global\n```\n\nCodex can also add non-URL stdio MCP servers with the generic command shape:\n\n```bash\ncodex mcp add <server-name> -- <command> [args...]\n```\n\n### Hosted GraphJin With OAuth\n\nWhen `mcp.oauth.enabled: true` is configured on a hosted GraphJin server, modern\nMCP clients can add it by URL and handle OAuth login themselves:\n\n```bash\ncodex mcp add graphjin --url https://graphjin.example.com/api/v1/mcp\nclaude mcp add --transport http graphjin https://graphjin.example.com/api/v1/mcp\n```\n\nThis is the native remote-MCP path. GraphJin serves OAuth protected-resource\nmetadata, authorization-server metadata, DCR/CIMD discovery, and MCP 401\nchallenges so the client can discover login automatically. See the official\n[OpenAI Docs MCP quickstart](https://platform.openai.com/docs/docs-mcp) for the\nCodex `mcp add --url` flow and the\n[Claude Code MCP docs](https://docs.claude.com/en/docs/claude-code/mcp) for\nClaude's HTTP transport and authentication flow.\n\nFor legacy/custom SSE servers, use Claude's SSE transport explicitly:\n\n```bash\nclaude mcp add --transport sse <name> <url>\nclaude mcp add --transport sse private-api https://api.company.com/sse \\\n  --header \"X-API-Key: your-key-here\"\n```\n\n### Legacy / Current `auth_login` Fallback\n\nIf a server still uses GraphJin's current `auth_login` device-code flow instead of standards OAuth, `graphjin mcp add` detects that automatically:\n\n```bash\ngraphjin mcp add codex https://graphjin.example.com\n```\n\nThe command opens the device-code login, saves `~/.config/graphjin/client.json`, and installs a credential-free local proxy config for the AI client. Re-run `graphjin mcp setup https://graphjin.example.com` later only when you want to refresh or rotate that saved CLI/proxy token.\n\nThe deprecated aliases still work for scripts:\n\n```bash\ngraphjin mcp install codex https://graphjin.example.com\ngraphjin mcp plugin install https://graphjin.example.com   # deprecated Claude alias\n```\n\n## Authenticate The CLI\n\nBefore `graphjin cli` can talk to a server, point it at one. There are no `--server` or `--token` flags — both come from a single saved config file (`~/.config/graphjin/client.json`, mode `0600`):\n\n```bash\ngraphjin cli setup http://localhost:8080            # local dev, no auth needed\ngraphjin cli setup https://graphjin.example.com     # signs in via the server's OIDC IdP\n```\n\nWhat `setup` does, depending on the server:\n\n- **No built-in login** (the server has `auth_login.enabled: false`): saves only the URL. CLI calls send no `Authorization` header.\n- **Built-in login enabled**: kicks off an [RFC 8628 device-code flow](https://www.rfc-editor.org/rfc/rfc8628). The CLI prints a verification URL + short code, opens your browser, you sign in with the configured identity provider (Google, Okta, Keycloak, Auth0-as-IdP, Azure AD — anything OIDC), and the server mints a 30-day JWT. Both URL and JWT are saved to `client.json`.\n\nAfter setup every `graphjin cli ...` command just works:\n\n```bash\ngraphjin cli health\ngraphjin cli query list\ngraphjin cli schema tables\ngraphjin cli setup show       # print the saved config (token redacted)\ngraphjin cli setup logout     # delete client.json\ngraphjin cli setup            # re-run sign-in against the same server (refresh token)\n```\n\nTo enable built-in login, set this on the server:\n\n```yaml\nauth:\n  type: jwt\n  jwt:\n    secret: \"long-random-shared-secret\"   # used to sign and verify local JWTs\n\nauth_login:\n  enabled: true\n  audience_graphjin: true                 # shorthand for audience: \"graphjin-cli\"\n  oidc:\n    issuer_url: \"https://accounts.google.com\"\n    client_id: \"...\"\n    client_secret: \"...\"                  # or $GJ_AUTH_LOGIN_OIDC_CLIENT_SECRET\n    allowed_domains: [\"example.com\"]      # optional allow-list\n\nmcp:\n  oauth:\n    enabled: true\n    mode: builtin                         # reuses auth_login identity\n    scopes: [\"mcp\"]\n```\n\nSuccessful authentication is recorded in structured logs with the verified `email` and `name` claims (when present), giving you a clean audit trail of who called every endpoint.\n\n## Getting started\n\nTo use GraphJin with your own databases you have to first create a new GraphJin app, then configure it using its config files and then launch GraphJin.\n\n**Step 1: Create New GraphJin App** \n```bash\ngraphjin serve new my-app\n```\n\n**Step 2: Start the GraphJin Service**\n```bash\ngraphjin serve --path ./my-app\n```\n\n**Step 3: Add GraphJin to an AI client**\n\n```bash\ngraphjin mcp add claude http://localhost:8080\n```\n\n**Step 4: Ask Claude questions like:**\n- \"What tables are in the database?\"\n- \"Show me all products under $50\"\n- \"List customers and their purchases\"\n- \"What's the total revenue by product?\"\n- \"Find products with 'wireless' in the name\"\n- \"Add a new product called 'USB-C Cable' for $19.99\"\n\n## How It Works\n\n1. **Connects to database** - Reads your schema automatically\n2. **Discovers relationships** - Foreign keys become navigable joins\n3. **Exposes metadata** - Built-in `gj_*` tables make discovered databases, tables, columns, relationships, functions, and indexes queryable when their feature capabilities are enabled\n4. **Indexes source code** - CodeSQL turns tree-sitter syntax trees and database references into a managed SQLite database\n5. **Exposes MCP tools** - Teach any LLM the query syntax\n6. **Runs JS workflows** - Chain multiple GraphJin MCP tools in one reusable workflow\n7. **Compiles to SQL** - Every request becomes a single optimized query\n\nNo resolvers. No ORM. No N+1 queries. Just point and query.\n\n## CodeSQL: Query Source Code Like a Database\n\nCodeSQL is a managed source kind for source trees. Configure a source folder and GraphJin creates a SQLite cache under `config/codesql/`, indexes it with tree-sitter, and updates it on restart. In development it also watches for changes while the service runs; in production live watching is disabled.\n\n```yaml\nsources:\n  - name: app\n    kind: database\n    type: postgres\n    connection_string: postgres://app:secret@db/app\n    default: true\n\n  - name: code\n    kind: code\n    path: /srv/app\n    infer_db_refs: true\n\ntables:\n  - name: users\n    source: app\n\n  - name: gj_code\n    source: code\n    read_only: true\n```\n\nGraphJin exposes CodeSQL through one ordinary GraphQL root, `gj_code`. Use `kind` to select files, symbols, references, imports, database references, docs, parse errors, change sets, and locks:\n\n```graphql\nquery {\n  gj_code(where: { kind: { eq: \"symbol\" }, name: { iregex: \"handler|resolver\" } }, limit: 20) {\n    name\n    symbol_kind\n    language\n    start_row\n    path\n    hash\n  }\n}\n```\n\nGraphJin's built-in catalog creates `gj_catalog` according to the deployment-mode defaults; no source entry is required. Schema, catalog, entrypoint, capability, workflow, and system metadata are catalog items; table and column metadata are selected by `kind`. When one CodeSQL source is active, GraphJin links catalog items to code references automatically:\n\n```graphql\nquery {\n  gj_catalog(where: { kind: { eq: \"column\" }, table_name: { eq: \"users\" }, column_name: { eq: \"email\" } }) {\n    database_name\n    table_name\n    column_name\n    gj_code {\n      kind\n      ref_kind\n      path\n      symbol_id\n    }\n  }\n}\n```\n\nThis is where the model gets genuinely powerful: the same agent can inspect production data systems and the code that operates them. It can ask, \"which handlers touch customer invoices?\", \"what tables do these workflows depend on?\", or \"show me the imports and call sites near this data path\" without switching tools or inventing a new backend.\n\n## What AI Can Do\n\n**Simple queries with filters:**\n```graphql\n{ products(where: { price: { gt: 50 } }, limit: 10) { id name price } }\n```\n\n**Nested relationships:**\n```graphql\n{\n  orders(limit: 5) {\n    id total\n    customer { name email }\n    items { quantity product { name category { name } } }\n  }\n}\n```\n\n**Aggregations:**\n```graphql\n{ products { count_id sum_price avg_price } }\n```\n\n**Analytics directives:**\n```graphql\n{\n  orders {\n    account_id\n    month\n    total\n    running_total: total @running(aggregate: sum, by: \"account_id\", orderBy: { month: asc })\n    moving_avg_total: total @moving(aggregate: avg, rows: 6, by: \"account_id\", orderBy: { month: asc })\n    previous_total: total @previous(by: \"account_id\", orderBy: { month: asc })\n    rank_by_total: total @rank(by: \"account_id\", order: desc)\n  }\n}\n```\nUse analytics directives when each original row should remain visible while adding report metrics such as running totals, moving averages, previous/next values, first/last values, and rank within a group. Ordinary one-row-per-group summaries still use `distinct` plus aggregate fields. Supported SQL databases validate analytics support at compile time; MongoDB and known-old database versions return clear errors.\n\n**Mutations:**\n```graphql\nmutation {\n  products(insert: { name: \"New Product\", price: 29.99 }) { id }\n}\n```\n\nPostgreSQL and SQLite also support an update-free insert conflict policy for a single row. GraphJin infers one supplied unique key and returns the stored row unchanged on conflict:\n\n```graphql\nmutation {\n  users(insert: { email: \"ada@example.com\", full_name: \"Ada\" }, on_conflict: get) {\n    id email full_name\n  }\n}\n```\n\n**Spatial queries:**\n```graphql\n{\n  stores(where: { location: { st_dwithin: { point: [-122.4, 37.7], distance: 1000 } } }) {\n    name address\n  }\n}\n```\n\n## Real-time Subscriptions\n\nGet live updates when your data changes. For databases with batching support, GraphJin handles thousands of concurrent subscribers with a single database query - not one per subscriber.\n\n```graphql\nsubscription {\n  orders(where: { user_id: { eq: $user_id } }) {\n    id total status\n    items { product { name } }\n  }\n}\n```\n\n**Why it's efficient:**\n- Traditional approach: 1,000 subscribers = 1,000 database queries\n- GraphJin: 1,000 subscribers = 1 optimized batch query\n- Automatic change detection - updates only sent when data actually changes\n- Built-in cursor pagination for feeds and infinite scroll\n\nDialects that do not implement GraphJin's batched polling path are listed as unsupported in the database support matrix.\n\nSubscribe over **WebSockets** (`graphql-ws` / `graphql-transport-ws` subprotocols) or **Server-Sent Events** — set `Accept: text/event-stream` on a `POST /api/v1/graphql` request and GraphJin streams `event: next` frames for each result, terminated by `event: complete`. Works from Node.js, Go, or any browser `EventSource` / WebSocket client.\n\n## Filesystem Tables (Local, S3, GCS)\n\nObject stores show up as ordinary tables in your GraphQL schema. Declare them in config and they get the same query surface as a database table — no per-storage GraphQL plumbing on your side.\n\n```yaml\nsources:\n  - name: avatars\n    kind: filesystem\n    backend: s3\n    bucket: my-bucket\n    prefix: avatars/\n    region: us-east-1\n    presign_ttl: 15m\n\n  - name: invoices\n    kind: filesystem\n    backend: gcs\n    bucket: invoices\n    prefix: 2026/\n\n  - name: uploads_local\n    kind: filesystem\n    backend: local\n    root: /var/lib/graphjin/uploads\n\ntables:\n  - name: avatars\n    source: avatars\n    read_only: true\n\n  - name: invoices\n    source: invoices\n    read_only: true\n\n  - name: uploads_local\n    source: uploads_local\n```\n\nEvery filesystem table exposes the same columns regardless of backend:\n\n```graphql\n{ avatars(\n    where: { key: { like: \"users/%\" } }\n    order_by: { key: asc }\n    limit: 50\n  ) {\n    key size content_type modified_at url\n  }\n}\n\n{ avatars(id: \"users/42.png\") {\n    key size url data    # data is base64 because the field was selected\n  }\n}\n```\n\nThe legacy `prefix`, `key`, and `inline_data` arguments remain accepted, but new callers should use the normal GraphJin read surface: `id`, `where`, `order_by`, `limit`, `offset`, `first`, `last`, `after`, and `before`.\nFor cursor pagination, request the standard root cursor field, e.g. `avatars_cursor`, and pass it back through `after: $cursor`.\n\n`url` is a presigned GET URL by default (15 min, configurable per table). Auth follows the standard credential chain: AWS env / `~/.aws` / IRSA / EC2 IMDS for S3, Application Default Credentials for GCS — never embedded in GraphJin config.\n\nSlim builds drop SDK weight: `-tags no_s3` or `-tags no_gcs` excludes either backend. Custom backends register through `core.OptionSetFilesystemBackend(name, factory)` — same SDK GraphJin uses for the built-ins.\n\n## File Uploads\n\nThe GraphQL endpoint accepts multipart bodies per the [graphql-multipart-request-spec](https://github.com/jaydenseric/graphql-multipart-request-spec). Files can be inlined as base64 (default) or streamed straight to a filesystem table:\n\n```yaml\nuploads:\n  enabled: true\n  storage: avatars               # name of a filesystems[] entry; omit to inline as base64\n  storage_key_prefix: \"{date}/\"  # {date} → YYYY/MM/DD\n  max_size: 25_000_000\n  allowed_mime: [\"image/*\", \"application/pdf\"]\n```\n\nWhen `storage` is set, the file body is written to the backend and the GraphQL variable becomes a stable reference — mutations persist this directly into a JSONB column:\n\n```json\n{ \"key\": \"2026/05/08/abc123.png\",\n  \"url\":  \"https://s3.../...?presigned\",\n  \"size\": 12345,\n  \"content_type\": \"image/png\" }\n```\n\nWhen `storage` is empty the variable carries the bytes inline as `{filename, content_type, size, data}` (base64) — useful for small uploads going straight into `bytea`.\n\n## Apollo Federation v2\n\nGraphJin can register as a federation subgraph so it composes with other services behind Apollo Router / Cosmo / Hive Gateway:\n\n```yaml\nfederation:\n  enabled: true\n  version: \"v2.5\"\n  keys:\n    users: [\"id\"]                  # auto-derived from PKs by default\n    orders: [\"id\", \"tenant_id\"]    # composite keys via override\n  shareable: [\"Tag.name\"]          # field-level @shareable\n  inaccessible: [\"Users.encrypted_password\"]\n```\n\n`_service { sdl }` returns a federation-flavoured SDL with `@link`, `@key`, `@shareable`, `@inaccessible`, `@tag`, `_Service`, and `_Entity`. Composition succeeds out of the box; `_entities` resolution is on the roadmap (the engine returns a clear error today, so gateways see the gap rather than silent failures).\n\n## HTTP API Routes\n\n`graphjin serve` exposes everything under a single host/port. All routes go through the configured auth handler unless noted.\n\n| Route | Methods | Purpose |\n|---|---|---|\n| `/api/v1/graphql` | `GET`, `POST` | GraphQL queries and mutations. Subscriptions if the request is a WebSocket upgrade or carries `Accept: text/event-stream` (SSE). |\n| `/api/v1/rest/<name>` | `GET`, `POST` | Run a saved/persisted query by name. Variables go in `?variables=…` (GET) or the JSON body (POST). |\n| `/api/v1/workflows/<name>` | `GET`, `POST` | Legacy workflow execution endpoint. In source mode it is registered only when `mcp.legacy_discovery: true`; use `gj_workflow_execution(insert)` through GraphQL otherwise. |\n| `/api/v1/openapi.json` | `GET` | OpenAPI 3 spec generated from your saved REST queries. |\n| `/api/v1/mcp` | `POST` | MCP (Model Context Protocol) HTTP transport — Streamable HTTP, stateless. |\n| `/api/v1/mcp/message` | `POST` | Legacy MCP message route for older local proxy/client integrations. New clients should use `/api/v1/mcp`. |\n| `/api/v1/agent` | `POST` | Server-side agent: send one instruction, get a typed evidence-backed answer (only when `agent.enabled`). See [Server-Side Agent](#server-side-agent). |\n| `/.well-known/oauth-protected-resource[/api/v1/mcp]` | `GET` | MCP OAuth protected-resource metadata (only when `mcp.oauth.enabled`). |\n| `/.well-known/oauth-authorization-server` | `GET` | Built-in MCP OAuth authorization-server metadata (only when `mcp.oauth.enabled`). |\n| `/api/v1/oauth/register` | `POST` | Built-in MCP OAuth dynamic client registration (only in builtin mode). |\n| `/api/v1/oauth/authorize` | `GET` | Built-in MCP OAuth authorization-code + PKCE start (only in builtin mode). |\n| `/api/v1/oauth/token` | `POST` | Built-in MCP OAuth token exchange/refresh (only in builtin mode). |\n| `/api/v1/discovery` | `GET` | Legacy discovery document. In source mode it is registered only when `mcp.legacy_discovery: true`; use catalog GraphQL roots otherwise. |\n| `/api/v1/discovery/<section>` | `GET` | Legacy discovery drill-down (e.g. `tables`, `insights`), gated the same way as `/api/v1/discovery`. |\n| `/api/v1/auth/device` | `POST` | OIDC device-flow start (only if `auth_login.enabled`). |\n| `/api/v1/auth/device/token` | `POST` | OIDC device-flow poll. |\n| `/api/v1/auth/login` | `GET` | OIDC login redirect. |\n| `/api/v1/auth/callback` | `GET` | OIDC callback. |\n| `/health` | `GET` | Liveness probe. **No auth.** |\n| `/` | `GET` | Built-in Web UI. Defaults on in `dev` and `agentic` modes, off in `prod`; set `web_ui` explicitly to override. The UI uses `/api/v1/graphql` and GraphJin system roots such as `gj_catalog`, `gj_security`, `gj_runtime`, `gj_code`, and `gj_config`; there is no separate admin REST API. |\n\n**Mode flags that change which routes are live:**\n- `mcp.disable: true` — removes `/api/v1/mcp` and `/api/v1/mcp/message`.\n- `mcp.only: true` — keeps only `/health` and `/api/v1/mcp*`. Legacy `/api/v1/workflows/*` and `/api/v1/discovery*` remain only when `mcp.legacy_discovery: true`.\n- Source mode (`sources:` present) disables legacy `/api/v1/workflows/*` and `/api/v1/discovery*` unless `mcp.legacy_discovery: true`.\n- `web_ui: false` — drops `/` even in dev or agentic mode.\n\n## MCP Tools\n\nGraphJin exposes a catalog-first MCP surface that guides AI models to discover before acting. The surface is caller-aware: `tools/list`, `graphql_help`, and `query_catalog` reflect the caller's visible tools, `gj_*` roots, catalog capabilities, and blocked/admin-only actions.\n\n- Start goal-driven work with `query_catalog(search: \"<user instruction>\")` when it is listed.\n- Inspect the best row with `query_catalog(id: \"...\")` before writing queries, choosing relationships, or using GraphJin-specific syntax.\n- Use `config_recipe` rows for operator work; they spell out preflight, preview/apply, unsupported apply, verification, stop conditions, and forbidden patterns.\n- Act through governed GraphQL roots such as `gj_workflow_execution(insert)`, `gj_workflow(insert/update/delete)`, and `gj_config(id: \"current\", update: ...)` only when policy exposes them.\n- In source mode, `gj_config` writes must run `mode: \"preview\"` with `expected_catalog_revision`, then resend the exact same payload with `mode: \"apply\"` and `preview_id`.\n- Source access and GraphJin root changes should use `source_patches` by exact source name instead of rewriting the full `sources` array.\n- Watches are managed through the unified `gj_watch` lifecycle/review root plus the `gj_watch_event` inbox and REST wrappers (`/api/v1/watches`, `/api/v1/watch-events/unseen`). A deterministic notification is a plain watch; semantic or noisy triage adds inline, tool-free AxFlow in `enrich_json`; only an explicitly requested autonomous action adds workflow/webhook delivery. Review a flow with `flow_review_json` and its `flow_hash`, or a proposed action with `action_review_json` and its `action_hash`. Flow failures deliver the raw notification but never execute autonomous delivery. MCP clients can subscribe to the aggregate `graphjin://watch-events/unseen` resource or the per-watch `graphjin://watch-events/unseen/{watch_id}` template; exact subscriptions keep independent conversations from waking for each other's watches. Unsubscribing does not pause or delete durable watches.\n- Use `/api/v1/watches/cleanup-preview` before `/api/v1/watches/cleanup-apply`. Expired ephemeral watches can be expired automatically, but durable watch deletion is always explicit.\n- Legacy discovery tools are migration shims and are disabled unless `mcp.legacy_discovery: true`.\n\nSchema reloads, schema changes, where-clause validation, and query repair remain MCP action tools.\n\nFor teams building MCP agents, internal copilots, workflow agents, or enterprise automation, see [AGENTIC.md](AGENTIC.md). It explains the catalog-first agent loop in detail: discover, inspect, validate, act, observe, and refine.\n\nKey discovery tools, when listed for the caller:\n- `graphql_help` to choose a catalog-backed topic route when the task is broad or unclear\n- `query_catalog` to search schema, relationship, workflow, language, `config_recipe`, config, policy, capability, and query-pattern items. Use `search` for ranked text discovery and `where` for exact filters.\n- `query_catalog(id: \"...\")` to inspect evidence, examples, details, safety notes, and graph edges for one row\n- `validate_where_clause` to validate filters before execution\n\nFor JS orchestration, use:\n- `query_catalog` with `where: { kind: { eq: \"workflow\" } }` to discover reusable workflows\n- `graphql_help(for: \"workflow_runtime\")` and workflow catalog rows to discover exactly which globals/functions are available inside workflow scripts\n- `gj_workflow_execution(insert: { workflow_name: \"...\", variables: {...} })` to run `./workflows/<name>.js` through GraphQL. This is mutation-only and returns an ephemeral result row; it does not store run history. Mark the workflows source or `gj_workflow_execution` table `read_only` to block it. The `execute_workflow` MCP compatibility tool is available only when `mcp.legacy_discovery: true` and `mcp.allow_workflow_execution: true`.\n\nLegacy prompts such as `write_query` and `fix_query_error` are available only when the caller's MCP surface lists them; in source mode their guidance lives in `graphql_help`, `query_catalog`, and GraphJin repair hints.\n\n## Server-Side Agent\n\nInstead of your client chaining `query_catalog` → `validate_where_clause` → `execute_saved_query`, let GraphJin run the catalog-first discovery loop for you. Dev and agentic modes enable the agent and expose `ask_graphjin_agent` alongside the primitive MCP tools by default. The REST endpoint `POST /api/v1/agent` takes the same instruction and returns a typed, evidence-backed answer (`status`, `answer`, `data`, `evidence`, `actions`, `next`).\n\n- **Zero configuration:** dev and agentic modes also enable a private `.graphjin/artifacts.sqlite3` store, watches (`runner: all`), and stateful MCP HTTP. No application subscription starts until an active, approved watch exists. Production defaults are unchanged.\n- **Execution control:** there are no per-request agent modes. `agent.read_only: true` forces the server-side agent to reject mutations, including saved-query mutations; otherwise core roles, row-level security, source/table `read_only`, and Go protocol guards decide what can run.\n- **Caller-scoped:** the agent runs as the caller, so core roles + row-level security enforce access. The caller's role only changes which *guidance* the agent follows, never what it can read or write.\n- **Grounded:** Go protocol guards keep every answer backed by real catalog/validation/execution evidence and downgrade to `blocked` (with evidence) when a step is skipped.\n- **Semantic-aware discovery:** when semantic catalog search is ready, the agent uses short business-intent phrases and may make one private two-or-three-phrase coverage batch; one Ax request embeds cache misses, and only real catalog relationship paths count as join evidence. Lexical-only prompts and public MCP stay unchanged.\n- **Machine-actionable refusals:** blocked responses carry a structured `refusal` (code, reasons, unblock steps, `policy_final`/`retryable`) so a calling agent can course-correct in one step instead of guessing.\n- **Server-owned model:** `ask_graphjin_agent` always uses the provider, model, and credential environment variable configured under `agent`. Without server credentials it fails closed with `model_credentials_required`.\n\nIt is an RLM loop — the model writes JavaScript that calls the discovery tools, and the typed result is parsed from `key: value` output. It needs strong **code generation**, not provider tool-calling. Ax requests structured JSON for typed stages, choosing the mechanism from the named deployment profile (`agent.provider`) and its rules for the selected model; `agent.structured_output_mode: auto` is the default, with `native`, `function`, and `json_object` available as overrides. `agent.service_tier` similarly defaults to provider-delegated `auto`, with portable `standard`, `flex`, and `priority` requests available when the profile/model supports them. See [AGENTIC.md](AGENTIC.md#server-side-agent) and [CONFIG.md](CONFIG.md#agent-configuration).\n\n## Watches And Standing Questions\n\nAsking is a pull: it only produces value when someone thinks to ask. A watch is the\npush direction. You hand `gj_watch` a cursor-paginated subscription once, and GraphJin\nkeeps answering it against live data, under the owner's stored identity and role.\n\n```graphql\nmutation {\n  gj_watch(insert: {\n    name: \"failed_invoices\"\n    description: \"Alert when a failed invoice changes.\"\n    query: \"subscription failed_invoices { invoices(where: {status: {eq: \\\"failed\\\"}}, first: 25, after: $cursor) { id account_id status attempts } invoices_cursor }\"\n  }) { id name status enabled }\n}\n```\n\n- **It costs database polls, not model calls.** The runner rides GraphJin's existing\n  cursor-backed subscriptions, compares a hash of each result, and writes a cursor\n  checkpoint even when nothing changed. No model is consulted to decide whether\n  something happened. A model writes the watch once; after that the only optional model\n  cost is per-watch triage in `enrich_json`, which is off by default and capped per day.\n- **Absence is a first-class event.** A watch with `absence_json` fires when the\n  expected thing *does not* arrive, so silence stops being indistinguishable from\n  health.\n- **It survives restarts.** Cursors are persisted, so a watch resumes where it left off\n  rather than replaying or skipping.\n- **It cannot outrun its owner.** A watch only ever sees what its owner could already\n  query, and both `gj_watch` and `gj_watch_event` are owner-scoped.\n- **Waking you and acting are different permissions.** Inbox delivery is immediate;\n  autonomous webhook or workflow delivery stays paused until the exact current\n  `action_hash` is approved. Alerts fail open, actions fail closed.\n\nThe built-in demo registers four standing questions on a first run (declared in\n`examples/saas-ops/seed/watches.yml`), three of which have already fired by the time the\nconsole opens. Management, review, cleanup, and MCP resource subscriptions are covered\nunder [MCP Tools](#mcp-tools); the full model is in\n[AGENTIC.md](AGENTIC.md#watches-standing-questions-with-a-durable-inbox).\n\n## Train And Measure Agents On Your Own Graph\n\nThe same machinery that grades GraphJin's public benchmark grades agents on\n*your* data, and runs as a reinforcement-learning environment for tuning small\nmodels on it.\n\n```bash\n# Generate a verified task suite from your catalog, with a train/eval split\ngraphjin eval create --demo --writable --scale 500 --composition coverage --split 0.8\n\n# Serve it: pooled isolated worlds, one graded episode per request\ngraphjin env serve --path ./graphjin-demo --suite eval/suite.yml --pool 4 \\\n  --split eval/suite.split.json --side train --freeze-time 2026-08-01T12:00:00Z\n```\n\n- **Tasks come from your schema, and the reward comes from the database.** Each\n  task carries a hidden oracle — a read-only query that computes the answer —\n  so being plausible earns nothing. Writes are graded by the state the database\n  ended in *and* by every other row staying put.\n- **Worlds are isolated and resettable.** An episode leases one, so a task that\n  writes changes only the world it was given.\n- **Your real schema, without your real data.** `graphjin env clone` learns a\n  running server's schema from its catalog and writes a local synthetic copy.\n  No rows are read; the only real values that cross over are the closed sets\n  the catalog already publishes.\n\nThree ways to drive an episode — GraphJin calls your endpoint, you supply each\ncompletion, or you bring the whole agent over MCP — all grading through the same\ncontract.\n\n**→ [The GraphJin Agent Environment](https://graphjin.com/environment/)**\n\n## JS Workflows (GraphQL + REST)\n\nWorkflows let an LLM run multi-step logic in JavaScript while still using GraphJin MCP tools for DB-aware operations.\n\nCreate a file in `./workflows`, for example `./workflows/customer_insights.js`:\n\n```js\nfunction main(input) {\n  const tables = gj.tools.queryCatalog({\n    where: { kind: { eq: \"table\" } }\n  }).cards;\n  const top = gj.tools.executeSavedQuery({\n    name: \"top_customers\",\n    variables: { limit: input.limit || 5 }\n  });\n  return { tables, top };\n}\n```\n\n### Run via GraphQL\n\n```graphql\nmutation {\n  gj_workflow_execution(insert: {\n    workflow_name: \"customer_insights\"\n    variables: { limit: 5 }\n  }) {\n    status\n    result_json\n    error\n  }\n}\n```\n\nLegacy MCP clients can call `execute_workflow` only when `mcp.legacy_discovery: true`.\n\n### Run via REST\n\nThis legacy HTTP endpoint is available in legacy database mode, or in source mode only when `mcp.legacy_discovery: true`.\n\n- `POST /api/v1/workflows/<name>` with JSON body\n- `GET /api/v1/workflows/<name>?variables={...json...}`\n\nBoth map variables to the same workflow input object.\n\n## Chat Walkthroughs\n\nReal conversations showing how an AI assistant uses GraphJin MCP tools to help you go from zero to running queries.\n\n### \"I have databases running but don't know the details\"\n\n> **You:** I have some databases running locally but I'm not sure about the ports or connection details. Can you help me set up GraphJin?\n\n> **Claude:** Let me scan your system to find running databases.\n>\n> *calls `discover_databases`*\n>\n> I found 2 databases on your system:\n> - **PostgreSQL** on localhost:5432 (TCP) — listening, auth: ok (user: postgres), databases: `myapp`, `myapp_test`\n> - **MySQL** on localhost:3306 (TCP) — listening, auth: auth_failed — default credentials failed, provide username and password\n>\n> The PostgreSQL instance has databases `myapp` and `myapp_test`. Which one would you like to configure GraphJin with?\n\n> **You:** Let's go with the \"myapp\" database on Postgres.\n\n> **Claude:** I'll configure GraphJin to connect to your PostgreSQL database.\n>\n> *calls `update_current_config` with databases: {\"main\": {type: \"postgres\", host: \"localhost\", port: 5432, user: \"postgres\", dbname: \"myapp\"}}*\n>\n> Connected successfully! Let me discover the catalog surface.\n>\n> *calls `query_catalog` with `where: {kind: {eq: \"table\"}}`*\n>\n> Your database has these tables: `users`, `orders`, `products`, `reviews`. Want me to write a query?\n\n> **You:** Show me users with their orders.\n\n> **Claude:** *calls `query_catalog` with `search: \"join users orders\", where: {kind: {eq: \"relationship\"}}`, then `query_catalog(id: \"<relationship_id>\")`, then `execute_graphql` if raw execution is listed*\n> ```graphql\n> { users { id name email orders { id total status } } }\n> ```\n> Here are the results — 24 users returned, each with their associated orders.\n\n### \"I have a Docker Compose project with MySQL\"\n\n> **You:** I'm running a Docker Compose stack with MySQL. Help me connect GraphJin to it.\n\n> **Claude:** Let me check what database containers you have running.\n>\n> *calls `discover_databases`*\n>\n> Found a MySQL Docker container:\n> - **MySQL** via Docker — container `myapp-db-1`, image `mysql:8.0`, port mapped to localhost:13306\n>\n> I'll configure GraphJin with the discovered connection details.\n>\n> *calls `update_current_config` with databases: {\"main\": {type: \"mysql\", host: \"localhost\", port: 13306, user: \"root\", dbname: \"\"}}*\n>\n> What's the database name and password for your MySQL instance?\n\n> **You:** Database is \"shop_db\", password is \"secret123\".\n\n> **Claude:** *calls `update_current_config` with the full credentials*\n>\n> Connected! Let me explore the catalog.\n>\n> *calls `query_catalog` with `where: {kind: {eq: \"table\"}}`*\n>\n> Tables found: `customers`, `products`, `orders`, `order_items`, `categories`. Let me check how they relate.\n>\n> *calls `query_catalog` with `search: \"join orders customers order_items products\", where: {kind: {eq: \"relationship\"}}`, then `query_catalog(id: \"<relationship_id>\")` for the relevant relationship items*\n>\n> `orders` connects to `customers` (via customer_id) and `order_items` (via order_id), and `order_items` links to `products`. Here's a nested query:\n>\n> ```graphql\n> { orders { id total customer { name email } order_items { quantity product { name price } } } }\n> ```\n\n### \"I want to query my SQLite app database\"\n\n> **You:** I have a SQLite database file in my project. Can GraphJin work with it?\n\n> **Claude:** Absolutely! Let me scan your project directory for SQLite files.\n>\n> *calls `discover_databases` with scan_dir: \".\"*\n>\n> Found 1 SQLite database:\n> - **data/app.sqlite3** — file found\n>\n> I'll configure GraphJin to use it.\n>\n> *calls `update_current_config` with databases: {\"main\": {type: \"sqlite\", path: \"data/app.sqlite3\"}}*\n>\n> Connected! Let me see your tables.\n>\n> *calls `query_catalog` with `where: {kind: {eq: \"table\"}}`*\n>\n> Tables: `tasks`, `projects`, `tags`, `task_tags`. Want to query something?\n\n> **You:** Show me all tasks with their project name, sorted by due date.\n\n> **Claude:** *calls `query_catalog` with `search: \"join tasks projects\", where: {kind: {eq: \"relationship\"}}`, then `query_catalog(id: \"<relationship_id>\")`, then `execute_graphql` if raw execution is listed*\n> ```graphql\n> { tasks(order_by: {due_date: asc}) { id title due_date completed project { name } } }\n> ```\n> Here are your 12 tasks sorted by due date, each showing the parent project name.\n\n## Database Support\n\n| Database | Queries | Mutations | Subscriptions | Full-Text | GIS | Schema DDL |\n|----------|---------|-----------|---------------|-----------|-----|------------|\n| PostgreSQL | Yes | Yes | Yes | Yes | PostGIS | Yes |\n| MySQL | Yes | Yes | Yes | Yes | 8.0+ | Yes |\n| MariaDB | Yes | Yes | Yes | Yes | Yes | Yes |\n| MSSQL | Yes | Yes | Yes | No | Yes | Yes |\n| Oracle | Yes | Yes | Yes | No | Yes | Yes |\n| SQLite | Yes | Yes | Yes | FTS5 | SpatiaLite | Yes |\n| MongoDB | Yes | Yes | Yes | Yes | Yes | No |\n| Cassandra / Keyspaces | CQL-native | Single-table PK | Partition-bound polling | No | No | No |\n| Snowflake | Yes | Yes | No | No | No | Yes |\n| Redshift | Experimental queries | Experimental PK writes | Experimental batched polling | Limited search | Limited | Experimental basic DDL |\n| BigQuery | Yes (experimental) | No | No | No | No | No |\n| CockroachDB | Yes | Yes | Yes | Yes | No | No |\n\nAlso works with AWS Aurora/RDS, Google Cloud SQL, and YugabyteDB. Snowflake supports key pair (JWT) authentication and SHOW-based catalog discovery/paging. Redshift support is experimental: queries/discovery, single-table primary-key writes, batched polling subscriptions, limited `ILIKE` search over configured `full_text` columns, limited spatial filters, and basic generated DDL. Redshift subscriptions are polling-based warehouse queries, not native change streams. BigQuery support is experimental and query-focused. Cassandra / Keyspaces support CQL-native queries, partition-bound polling subscriptions, and single-table primary-key writes; aggregates, full scans, OR-style cross-partition filters, full-text, and GIS remain outside the generic surface.\n\n## Production Security\n\n**Query allow-lists** - In production, only saved queries can run. AI models call `execute_saved_query` with pre-approved queries. No arbitrary SQL injection possible.\n\n**Source-mode access** - New multi-user deployments should use `sources:` with request-wide `identity` and source-level access defaults. GraphJin compiles those defaults into the existing qcode/SQL enforcement path, so account filters and trusted mutation presets are enforced by the generated database query.\n\n```yaml\nidentity:\n  user_id_claim: sub\n  role_claims: [role, roles]\n  namespace_claim: account_id\n\nsources:\n  - name: app\n    kind: database\n    access:\n      read: account\n      write: blocked\n      delete: blocked\n      namespace_column: account_id\n```\n\nSee [SECURITY.md](SECURITY.md) for the security model and [Source Mode Migration](docs/SOURCE-MODE-MIGRATION.md) for legacy `roles[].tables` migration steps. In source mode, user-written `roles[].tables` rules are rejected intentionally.\n\n**JWT authentication** - Supports Auth0, Firebase, JWKS endpoints.\n\n**Response caching** - Redis with in-memory fallback. Automatic cache invalidation on mutations. **Stale-while-revalidate** support: serve cached responses immediately while a background worker refreshes the entry — concurrent refreshes for the same key are deduplicated via singleflight, and the worker pool is bounded so a thundering herd can't spawn unbounded goroutines.\n\n```yaml\ncaching:\n  ttl: 3600          # hard expiry in seconds\n  fresh_ttl: 300     # soft expiry — entries past this trigger SWR refresh\n```\n\n## Also a GraphQL API\n\nGraphJin works as a traditional API too - use it from Go or as a standalone service.\n\n### Go\n```bash\ngo get github.com/dosco/graphjin/core/v3\n```\n```go\ndb, _ := sql.Open(\"pgx\", \"postgres://localhost/myapp\")\ngj, _ := core.NewGraphJin(nil, db)\nres, _ := gj.GraphQL(ctx, `{ users { id email } }`, nil, nil)\n```\n\n### Standalone Service\n```bash\nbrew install dosco/graphjin/graphjin  # Mac\ngraphjin serve new myapp && cd myapp\ngraphjin serve\n```\n\nBuilt-in web UI at `http://localhost:8080` for query development.\n\n## Documentation\n\n- [Configuration Reference](CONFIG.md)\n- [Feature Reference](FEATURES.md)\n- [Agent Environment](https://graphjin.com/environment/) — train and measure agents\n- [Agent Evaluation](https://graphjin.com/agentic/evaluation/) — gate a release\n- [Go Examples](https://pkg.go.dev/github.com/dosco/graphjin/core#pkg-examples)\n\n## Get in Touch\n\n[Twitter @dosco](https://twitter.com/dosco) | [Discord](https://discord.gg/6pSWCTZ)\n\n## License\n\n[Apache Public License 2.0](https://opensource.org/licenses/Apache-2.0)\n","readmeFilename":"README.md"}