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Interactive Circos","maintainers":[{"name":"ibowankenobi","email":"tanyalcin.ibrahim@gmail.com"}],"readme":"# I-PV <img src=\"https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/logo.png?raw=true\" width='70' height='auto' style='float:right;'>\n\n[![NPM](https://nodei.co/npm/ibowankenobi-i-pv.png)](https://nodei.co/npm/ibowankenobi-i-pv/)\n\n[![I-PV Website](https://img.shields.io/badge/ipv-website-orange)](http://www.i-pv.org/)\n[![Readme](https://img.shields.io/badge/ipv-readme-azure\n)](https://github.com/IbrahimTanyalcin/I-PV/tree/master/i-pv)\n[![Readme-Docker](https://img.shields.io/badge/ipv-docker-azure\n)](https://github.com/IbrahimTanyalcin/I-PV/tree/master/docker)\n[![Changelog](https://img.shields.io/badge/ipv-changelog-azure\n)](https://github.com/IbrahimTanyalcin/I-PV/blob/master/CHANGELOG.md)\n\n\n## Read the article\n\n[![link](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/i-pv_article.jpeg?raw=true)](https://academic.oup.com/bioinformatics/article/32/3/447/1743584)\n\n## Interactive Protein Sequence VIsualization/Viewer\n\nI-PV aims to unify protein features in a single interactive figure. It is easy to generate and\nhighly customizable. Data is checked and then plotted. When you publish figures with I-PV, I recommed you also\npost the files in the datatracks folder as supplementary. \n\nIn I-PV is designed to convey complex proteomics information to the audience in an interesting format. \n\nBelow are some [sample outputs](http://i-pv.org/EGFR.html).\n\n![alt tag](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/sample.png?raw=true)\n\n![alt tag 2](https://github.com/IbrahimTanyalcin/I-PV/blob/master/img/sample2.png?raw=true)\n\n## Readme\n[![Readme](https://img.shields.io/badge/ipv-readme-azure\n)](https://github.com/IbrahimTanyalcin/I-PV/tree/master/i-pv)\n\n## Changelog\n[![Changelog](https://img.shields.io/badge/ipv-changelog-azure\n)](https://github.com/IbrahimTanyalcin/I-PV/blob/master/CHANGELOG.md)\n\n## Todo\n[![Changelog](https://img.shields.io/badge/ipv-todo-azure\n)](https://github.com/IbrahimTanyalcin/I-PV/blob/master/TODO.md)\n\n## Publishing\n\n- Run one of the publish scripts within `package.json`:\n\n```\nnpm run publishPatchNPM\n```\n- The `gitTag.js` inside `/utils` can both update `npm` version and `org_ipv` version. \n- If you change peripheral files only, increment `npm` version. \n- If you change `SNPtoAA.pl`, increment both `npm` version and `org_ipv` version.\n- Choose the right publish script based on above.\n\n## Mirrorring\n\n- Publish scripts automatically run `syncMirror`. For it to work, you must have `mirror.conf.json` that has `path` key, which points to the folder of the mirror. Both root folder and mirror folders are recursively searched with a depth of `5`.\n- `azure.yaml` syncs a private azure repository. You can use it for other projects by changing the `REMOTE_ADDR` variable.\n- `sync-public.yml` is the `azure.yaml` equivalent of syncing public remote master with your fork. For it work, create a remote branch with name `public` and add `GIT_USER_NAME` and `GIT_USER_EMAIL` secrets to your repo.","readmeFilename":"README.md"}