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database on top of a flumelog with automatic index generation and maintenance","homepage":"https://github.com/ssb-ngi-pointer/jitdb","repository":{"type":"git","url":"git://github.com/ssb-ngi-pointer/jitdb.git"},"author":{"name":"Anders Rune Jensen","email":"arj03@protonmail.ch"},"bugs":{"url":"https://github.com/ssb-ngi-pointer/jitdb/issues"},"license":"LGPL-3.0","readme":"<!--\nSPDX-FileCopyrightText: 2021 Anders Rune Jensen\n\nSPDX-License-Identifier: CC0-1.0\n-->\n\n# JITDB\n\nA database on top of [async-append-only-log] with automatic index generation and\nmaintenance.\n\nThe motivation for this database is that it should be:\n\n- fast\n- easy to understand\n- run in the browser and in node\n\nAsync append only log takes care of persistance of the main log. It is\nexpected to use [bipf] to encode data. On top of this, JITDB lazily\ncreates and maintains indexes based on the way the data is queried.\nMeaning if you search for messages of type `post` an author `x` two\nindexes will be created the first time. One for type and one for\nauthor. Specific indexes will only updated when it is queried again.\nThese indexes are tiny compared to normal [flume] indexes. An index of\ntype `post` is 80kb.\n\nFor this to be feasible it must be really fast to do a full log scan.\nIt turns out that the combination of push streams and bipf makes\nstreaming the full log not much slower than reading the file. Meaning\na 350mb log can be scanned in a few seconds.\n\nWhile this is mainly aimed as a query engine, it is possible to base\nother indexes types on top of this, such as a reduce index on contact\nmessages.\n\n## API\n\n### Setup\n\nBefore using JITDB, you have to setup an instance of\n[async-append-only-log] located at a certain path. Then you can\ninstantiate JITDB, and it requires a **path to the directory where the\nindexes** will live.\n\n```js\nconst Log = require('async-append-only-log')\nconst JITDB = require('jitdb')\n\nconst raf = Log('/home/me/path/to/async-log', {\n  blockSize: 64 * 1024,\n})\nconst db = JITDB(raf, '/home/me/path/to/indexes')\n\ndb.onReady(() => {\n  // The db is ready to be queried\n})\n```\n\n### Operators\n\nJITDB comes with a set of composable \"operators\" that allow you to\nquery the database. You can load these operators from\n`require('jitdb/operators')`.\n\n```js\nconst Log = require('async-append-only-log')\nconst JITDB = require('jitdb')\nconst {query, fromDB, where, slowEqual, toCallback} = require('jitdb/operators')\n\nconst raf = Log('/home/me/path/to/async-log', {\n  blockSize: 64 * 1024,\n})\nconst db = JITDB(raf, '/home/me/path/to/indexes')\n\ndb.onReady(() => {\n  query(\n    fromDB(db),\n    where(slowEqual('value.content.type', 'post')),\n    toCallback((err, msgs) => {\n      console.log(msgs)\n    })\n  )\n})\n```\n\nThe essential operators are `fromDB`, `query`, and `toCallback`.\n\n- **fromDB** specifies which JITDB instance we are interested in\n- **query** wraps all the operators, chaining them together\n- **where** wraps *descriptor operators* (see below) that narrow down the data\n- **toCallback** delivers the results of the query to a callback\n\nThen there are *descriptor operator* that help scope down the results to your\ndesired set of messages: `and`, `or`, `not`, `equal`, `slowEqual`, and others.\n\n- `and(...args)` filters for messages that satisfy **all** `args`\n- `or(...args)` filters for messages that satisfy **at least one** of the `args`\n- `not(arg)` filters for messages that do not safisfy `arg`\n- `equal(seek, value, opts)` filters for messages where a `seek`ed _field_\n  matches a specific _value_:\n  - `seek` is a function that takes a [bipf] buffer as input and uses\n    `bipf.seekKey` to return a pointer to the _field_\n  - `value` is a string or buffer which is the value we want the _field_'s value to match\n  - `opts` are additional configurations:\n    - `indexType` is a name used to identify the index produced by this query\n    - `prefix` boolean or number `32` that tells this query to use [prefix indexes](#prefix-indexes)\n- `slowEqual(objPath, value, opts)` is a more ergonomic (but slower) way of performing `equal`:\n  - `objPath` a string in the shape `\"foo.bar.baz\"` which specifies the nested field `\"baz\"` inside `\"bar\"` inside `\"foo\"`\n  - `value` is the same as `value` in the `equal` operator\n  - `opts` same as the opts for `equal()`\n- `includes(seek, value, opts)` filters for messages where a `seek`ed _field_\n  is an array and includes a specific _value_\n- `slowIncludes(objPath, value, opts)` is to `includes` what `slowEqual` is to\n  `equal`\n- `predicate(seek, fn, opts)` filters for messages where a `seek`ed _field_ is\n  passed to a predicate function `fn` and the `fn` returns true\n  - `opts` are additional configurations such as `indexType` and `name`. You\n  SHOULD pass `opts.name` as a simple string uniquely identifying the predicate,\n  OR the `fn` function should be a named function\n- `slowPredicate(objPath, fn, opts)` is to `predicate` what `slowEqual` is to\n  `equal`\n- `absent(seek, opts)` filters for messages where a `seek`ed _field_ does not\n  exist in the message\n- `slowAbsent(objPath)` is to `absent` what `slowEqual` is to `equal`\n\nSome examples:\n\n**Get all messages of type `post`:**\n\n```js\nquery(\n  fromDB(db),\n  where(slowEqual('value.content.type', 'post')),\n  toCallback((err, msgs) => {\n    console.log('There are ' + msgs.length + ' messages of type \"post\"')\n  })\n)\n```\n\n**Same as above but faster performance (recommended in production):**\n\n```js\nquery(\n  fromDB(db),\n  where(equal(seekType, 'post', { indexType: 'type' })),\n  toCallback((err, msgs) => {\n    console.log('There are ' + msgs.length + ' messages of type \"post\"')\n  })\n)\n\n// The `seekType` function takes a buffer and uses `bipf` APIs to search for\n// the fields we want.\nconst bValue = Buffer.from('value') // better for performance if defined outside\nconst bContent = Buffer.from('content')\nconst bType = Buffer.from('type')\nfunction seekType(buffer) {\n  var p = 0 // p stands for \"position\" in the buffer, offset from start\n  p = bipf.seekKey(buffer, p, bValue)\n  if (p < 0) return\n  p = bipf.seekKey(buffer, p, bContent)\n  if (p < 0) return\n  return bipf.seekKey(buffer, p, bType)\n}\n```\n\n**Get all messages of type `contact` from Alice or Bob:**\n\n```js\nquery(\n  fromDB(db),\n  where(\n    and(\n      slowEqual('value.content.type', 'contact'),\n      or(slowEqual('value.author', aliceId), slowEqual('value.author', bobId))\n    )\n  ),\n  toCallback((err, msgs) => {\n    console.log('There are ' + msgs.length + ' messages')\n  })\n)\n```\n\n**Same as above but faster performance (recommended in production):**\n\n```js\nquery(\n  fromDB(db),\n  where(\n    and(\n      equal(seekType, 'contact', 'type')\n      or(\n        equal(seekAuthor, aliceId, { indexType: 'author' }),\n        equal(seekAuthor, bobId, { indexType: 'author' })\n      )\n    )\n  ),\n  toCallback((err, msgs) => {\n    console.log('There are ' + msgs.length + ' messages')\n  })\n)\n\n// where seekAuthor is\nconst bValue = Buffer.from('value') // better for performance if defined outside\nconst bAuthor = Buffer.from('author')\nfunction seekAuthor(buffer) {\n  var p = 0\n  p = bipf.seekKey(buffer, p, bValue)\n  if (p < 0) return\n  return bipf.seekKey(buffer, p, bAuthor)\n}\n```\n\n#### Pagination\n\nIf you use `toCallback`, it gives you all results in one go. If you\nwant to get results in batches, you should use **`toPullStream`**,\n**`paginate`**, and optionally `startFrom` and `descending`.\n\n- **toPullStream** creates a [pull-stream] source to stream the results\n- **paginate** configures the size of each array sent to the pull-stream source\n- **startFrom** configures the beginning seq from where to start streaming\n- **descending** configures the pagination stream to order results\n  from newest to oldest (otherwise the default order is oldest to\n  newest) based on timestamp\n\nExample, **stream all messages of type `contact` from Alice or Bob in pages of size 10:**\n\n```js\nconst pull = require('pull-stream')\n\nconst source = query(\n  fromDB(db),\n  where(\n    and(\n      slowEqual('value.content.type', 'contact')\n      or(slowEqual('value.author', aliceId), slowEqual('value.author', bobId)),\n    ),\n  ),\n  paginate(10),\n  toPullStream()\n)\n\npull(\n  source,\n  pull.drain((msgs) => {\n    console.log('next page')\n    console.log(msgs)\n  })\n)\n```\n\n**Stream all messages of type `contact` from Alice or Bob in pages of\nsize 10, starting from the 15th message, sorted from newest to\noldest:**\n\n```js\nconst pull = require('pull-stream')\n\nconst source = query(\n  fromDB(db),\n  where(\n    and(\n      slowEqual('value.content.type', 'contact')\n      or(slowEqual('value.author', aliceId), slowEqual('value.author', bobId)),\n    ),\n  ),\n  paginate(10),\n  startFrom(15),\n  descending(),\n  toPullStream()\n)\n\npull(\n  source,\n  pull.drain((msgs) => {\n    console.log('next page:')\n    console.log(msgs)\n  })\n)\n```\n\n**Batching** with the operator `batch()` is similar to pagination in terms of\nperformance, but the messages are delivered one-by-one to the final pull-stream,\ninstead of as any array. Example:\n\n```js\nconst pull = require('pull-stream')\n\nconst source = query(\n  fromDB(db),\n  where(\n    and(\n      slowEqual('value.content.type', 'contact')\n      or(slowEqual('value.author', aliceId), slowEqual('value.author', bobId)),\n    ),\n  ),\n  batch(10), // Note `batch` instead of `paginate`\n  descending(),\n  toPullStream()\n)\n\npull(\n  source,\n  // Note the below drain is `msg`, not `msgs` array:\n  pull.drain((msg) => {\n    console.log('next message:')\n    console.log(msg)\n  })\n)\n```\n\n#### async/await\n\nThere are also operators that support getting the values using\n`await`. **`toPromise`** is like `toCallback`, delivering all results\nat once:\n\n```js\nconst msgs = await query(\n  fromDB(db),\n  where(\n    and(\n      slowEqual('value.content.type', 'contact')\n      or(slowEqual('value.author', aliceId), slowEqual('value.author', bobId)),\n    ),\n  ),\n  toPromise()\n)\n\nconsole.log('There are ' + msgs.length + ' messages')\n```\n\nWith pagination, **`toAsyncIter`** is like **`toPullStream`**, streaming the results in batches:\n\n```js\nconst results = query(\n  fromDB(db),\n  where(\n    and(\n      slowEqual('value.content.type', 'contact')\n      or(slowEqual('value.author', aliceId), slowEqual('value.author', bobId)),\n    ),\n  ),\n  paginate(10),\n  startFrom(15),\n  toAsyncIter()\n)\n\nfor await (let msgs of results) {\n  console.log('next page:')\n  console.log(msgs)\n}\n```\n\n#### Custom indexes and `deferred` operator\n\nThere may be custom indexes external to JITDB, in which case you\nshould convert the results from those indexes to `offsets()` or\n`seqs()` (read more about these in the low level API section). In\nthose cases, the `OFFSETS` or `SEQS` are often received\nasynchronously. To support piping these async results in the `query`\nchain, we have the `deferred()` operator which postpones the fetching\nof results from your custom index, but allows you to compose\noperations nevertheless.\n\n```js\n// operator\ndeferred(task)\n```\n\nwhere `task` is any function of the format\n\n```js\nfunction task(meta, cb[, onAbort])\n```\n\nwhere `meta` is an object containing an instance of JITDB and other\nmetadata, and `onAbort` is an optional function that you can pass an\nabort listener (i.e. `onAbort(() => { /* cancel my stuff */ })`).\n\nAs an example, suppose you have a custom index that returns seqs\n`11`, `13` and `17`, and you want to include these results into your\noperator chain, to `AND` them with a specific author. Use `deferred`\nlike this:\n\n```js\nquery(\n  fromDB(db),\n  deferred((meta, cb) => {\n    // do something asynchronously, then deliver results to cb\n    cb(null, seqs([11, 13, 17]))\n  }),\n  where(slowEqual('value.author', aliceId)),\n  toCallback((err, results) => {\n    console.log(results)\n  })\n)\n```\n\n#### All operators\n\nThis is a list of all the operators supported so far:\n\n```js\nconst {\n  fromDB,\n  query,\n  where,\n  and,\n  or,\n  not,\n  equal,\n  slowEqual,\n  predicate,\n  slowPredicate,\n  absent,\n  slowAbsent,\n  includes,\n  slowIncludes,\n  gt,\n  gte,\n  lt,\n  lte,\n  deferred,\n  liveSeqs,\n  seqs,\n  offsets,\n  count,\n  paginate,\n  batch,\n  startFrom,\n  descending,\n  asOffsets,\n  sortByArrival,\n  debug,\n  toCallback,\n  toPullStream,\n  toPromise,\n  toAsyncIter,\n} = require('jitdb/operators')\n```\n\n## Prefix indexes\n\nMost indexes in JITDB are bitvectors, which are suitable for answering\nboolean queries such as \"is this msg a post?\" or \"is this msg from\nauthor A?\". For each of these queries, JITDB creates one file.\n\nThis is fine for several cases, but some queries are not\nboolean. Queries on bitvectors such as \"is this msg a reply to msg X?\"\ncan end up generating `N` files if the \"msg X\" can have N different\nvalues. The creation of indexes is this case becomes the overhead.\n\n**Prefix indexes** help in that case because they can answer\nnon-boolean queries with multiple different values but using just one\nindex file. For example, for N different values of \"msg X\", just one\nprefix index is enough for answering \"is this msg a reply to msg X?\".\n\nThe way prefix indexes work is that for each message in the log, it\npicks the first 32 bits of a field in the message (hence 'prefix') and\nthen compares your desired value with all of these prefixes. It\ndoesn't store the whole value because that could turn out wasteful in\nstorage and memory as the log scales (to 1 million or more\nmessages). Storing just a prefix is not enough for uniqueness, though,\nas different values will have the same prefix, so queries on prefix\nindexes will create false positives, but JITDB does an additional\ncheck so in the resulting query, **you will not get false positives**.\n\n_Rule of thumb_: use prefix indexes in an EQUAL operation only when\nthe target `value` of your EQUAL can dynamically assume many (more\nthan a dozen) possible values.\n\nAn additional option `useMap` can be provided that will store the\nprefix as a map instead of an array. The map can be seen as an\ninverted index that allows for faster queries at the cost of extra\nspace. Maps don't store empty values meaning they are also a good fit\nfor sparce indexes such as vote links.\n\nIt is possible specifiy where in the target the prefix buffer should\nbe constructed from using `prefixOffset`. This is useful for targets\nthat starts with a common prefix such as % in order to increase the\ninformation amount.\n\n## Low-level API\n\nFirst some terminology: offset refers to the byte position in the log\nof a message. Seq refers to the 0-based position of a message in the\nlog.\n\n### paginate(operation, seq, limit, descending, onlyOffset, sortBy, latestMsgKeyPrecompaction, cb)\n\nQuery the database returning paginated results. If one or more indexes\ndoesn't exist or are outdated, the indexes will be updated before the\nquery is run. `onlyOffset` can be used to return offset instead of the\nactual messages. `sortBy` determines what timestamp to use for\nordering messages. Can take values `declared` or `arrival`. `declared`\nrefers to the timestamp for when a message was created, while\n`arrival` refers to when a message was added to the database. This can\nbe important for messages from other peers that might arrive out of\norder compared when they were created.\n\n`latestMsgKeyPrecompaction` is used internally, and it's safe to just pass\n`null` as its value when you're calling `paginate`.\n\nThe result is an object with the fields:\n\n- `data`: the actual messages\n- `total`: the total number of messages\n- `duration`: the number of ms the query took\n\nOperation can be of the following types:\n\n| type          | data                                         |\n| ------------- | -------------------------------------------- |\n| EQUAL         | { seek, value, indexType, indexAll, prefix } |\n| GT,GTE,LT,LTE | { indexName, value }                         |\n| OFFSETS       | { offsets }                                  |\n| SEQS          | { seqs }                                     |\n| NOT           | [operation]                                  |\n| AND           | [operation, operation]                       |\n| OR            | [operation, operation]                       |\n\n`seek` is a function that takes a buffer from the database as input\nand returns an index in the buffer from where a value can be compared\nto the `value` given. `value` must be a bipf encoded value, usually\nthe `equal` operator will take care of that. A field not being defined\nat a point in the buffer is equal to `undefined`. `prefix` enables the\nuse of prefix indexes for this operation. `indexType` is used to group\nindexes of the same type. If `indexAll` is specified and no index of\nthe type and value exists, then instead of only this index being\ncreated, missing indexes for all possible values given the seek\npointer will be created. This can be particular useful for data where\nthere number of different values are rather small, but still larger\nthan a few. One example is author or feeds in SSB, a typical database\nof 1 million records will have roughly 700 authors. The biggest cost\nin creating the indexes is traversing the database, so creating all\nindexes in one go instead of several hundreds is a lot faster.\n\nFor `GT`, `GTE`, `LT` and `LTE`, `indexName` can be either `sequence`\nor `timestamp`.\n\n`SEQS` and `OFFSETS` allow one to use seq and offset (respectively)\npositions into the log file as query operators. This is useful for\ninterfacing with data indexed by something else than JITDB. Seqs\nare faster as they can be combined in queries directly.\n\nExample\n\n```\n{\n  type: 'AND',\n  data: [\n    { type: 'EQUAL', data: { seek: db.seekType, value: 'post', indexType: \"type\" } },\n    { type: 'EQUAL', data: { seek: db.seekAuthor, value: '@6CAxOI3f+LUOVrbAl0IemqiS7ATpQvr9Mdw9LC4+Uv0=.ed25519', indexType: \"author\" } }\n  ]\n}\n```\n\nI considered adding an option to return raw buffers in order to do\nsome after processing that you wouldn't create and index for, but the\noverhead of decoding the buffers is small enough that I don't think it\nmakes sense.\n\n### all(operation, seq, descending, onlyOffset, sortBy, cb)\n\nSimilar to `paginate` except there is no `limit` argument and the result\nwill be the messages directly.\n\n### count(operation, seq, descending, cb)\n\nSimilar to `all` except it does not fetch records from the log, it only responds with a number that tells the total amount of records matching the operation.\n\n### prepare(operation, cb)\n\nEnsures that the indexes in the `operation` are up-to-date by creating or\nupdating them, if necessary. This is not a query, as it won't return any\nresults. When done, the callback `cb` is just called with the \"duration\" of\nindex preparation as the second argument.\n\n### lookup(operation, seq, cb)\n\nGiven one `seq`, lookup its corresponding value on the index specified by\n`operation`, which is either an operation object or a string for the name of a\ncore index, such as `'seq'` and `'timestamp'`. The callback `cb` is called with\nthe index's value (at that `seq` position) in the 2nd arg.\n\n### live(operation, cb)\n\nWill setup a pull stream and this in `cb`. The pull stream will emit\nnew values as they are added to the underlying log. This is meant to\nrun after `paginate` or `all`.\n\nPlease note the index is _not_ updated when using this method and only\none live seqs stream is supported.\n\n### reindex(offset, cb)\n\nReset all indexes to start from `offset`. This means that on the next\nquery, messages from that offset and forward will be reindexed.\n\n### onReady(cb)\n\nWill call when all existing indexes have been loaded.\n\n[flume]: https://github.com/flumedb/\n[async-append-only-log]: https://github.com/ssb-ngi-pointer/async-append-only-log\n[bipf]: https://github.com/dominictarr/bipf/\n[pull-stream]: https://github.com/pull-stream/pull-stream\n","readmeFilename":"README.md","contributors":[{"name":"Andre Staltz","email":"contact@staltz.com"}]}