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Zujkowski"},"license":"MIT","homepage":"https://github.com/nexus-substrate/nexus-agents#readme","keywords":["mcp","model-context-protocol","ai","agents","multi-agent","governance","code-review","consensus","audit","orchestration","claude","codex","openai","gemini","opencode","ollama","llm","workflow"],"repository":{"url":"git+https://github.com/nexus-substrate/nexus-agents.git","type":"git"},"description":"Governance substrate for AI coding agents — adversarial PR review, drift-detected rules, tamper-evident audit, and closed-loop outcome routing for Claude, Codex, Gemini, and OpenCode","maintainers":[{"name":"williamzujkowski","email":"william.zujkowski@gmail.com"}],"readme":"# Nexus Agents\n\n> Governance substrate for your AI coding agents — adversarial review, drift-detected rules, tamper-evident append-only audit chain, human-gated closed-loop tuning (autonomous demotion, earned promotion)\n\n[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)\n[![Node.js Version](https://img.shields.io/badge/node-%3E%3D22.0.0-brightgreen)](https://nodejs.org)\n[![TypeScript](https://img.shields.io/badge/TypeScript-5.9+-blue)](https://www.typescriptlang.org)\n[![MCP Protocol](https://img.shields.io/badge/MCP-2025--11--25-purple)](https://modelcontextprotocol.io)\n[![npm version](https://img.shields.io/npm/v/nexus-agents)](https://www.npmjs.com/package/nexus-agents)\n\n---\n\n## Overview\n\nNexus Agents is a governance layer that sits above your AI coding agents — Claude, Codex, Gemini, and OpenCode. The agents do the engineering; nexus-agents enforces the rules they follow, reviews their work adversarially before it ships, audits everything they touch, and routes the next task based on what actually worked (LinUCB bandit + TOPSIS scoring fed by an outcome store). It connects to any MCP-compatible editor. Routing is a means to the governance end, not the product.\n\n### Key Capabilities\n\n- **Intelligent Routing** — Multi-stage CompositeRouter (TOPSIS, LinUCB bandit, distilled-rule short-circuit, weather-aware penalties). Learns from outcomes.\n- **Multi-Expert Orchestration** — Specialized expert agents (code, architecture, security, testing, docs, devops, research, PM, UX, infrastructure, QA, data-visualization) coordinated by an Orchestrator.\n- **Consensus Voting** — Six aggregation strategies: simple/super-majority, unanimous, higher-order Bayesian, opinion-wise, proof-of-learning.\n- **Development Pipeline** — Research → Plan → Vote → Decompose → Implement → QA → Security. Autonomous, harness, and dry-run modes.\n- **Memory & Learning** — Multiple backends (session, belief, adaptive, routing, graph, hybrid, agentic, typed) with cross-session persistence.\n- **MCP Tools** — Agent management, workflow execution, research, memory, codebase intelligence, repo analysis, consensus, operations. See [docs/ENTRYPOINTS.md](https://github.com/nexus-substrate/nexus-agents/blob/main/docs/ENTRYPOINTS.md) for the canonical list.\n- **Research System** — Discovery across arXiv, GitHub, Semantic Scholar, and other sources with auto-catalog and synthesis.\n- **Security** — Sandboxing, trust classification, SARIF parsing, input sanitization, red team pipeline.\n\n---\n\n## Quick Start\n\n### Installation\n\n```bash\n# Install the package\nnpm install nexus-agents\n\n# Or install globally for CLI usage\nnpm install -g nexus-agents\n```\n\n### CLI Usage\n\nStart the MCP server:\n\n```bash\n# If installed globally\nnexus-agents\n\n# Or with npx\nnpx nexus-agents\n```\n\n### Programmatic Usage\n\n```typescript\nimport { startStdioServer, ExpertFactory, createClaudeAdapter } from 'nexus-agents';\n\n// Start MCP server (recommended — used by Claude Code, Claude Desktop, etc.)\nconst result = await startStdioServer({\n  name: 'my-server',\n  version: '1.0.0',\n});\n\n// Or use programmatically with model adapters\nconst adapter = createClaudeAdapter({\n  model: 'claude-sonnet-4-6',\n});\n\n// Create experts dynamically\nconst factory = new ExpertFactory(adapter);\nconst codeExpert = factory.create({ type: 'code' });\nconst securityExpert = factory.create({ type: 'security' });\n```\n\n### Claude Desktop Integration\n\nAdd to your Claude Desktop configuration (`~/Library/Application Support/Claude/claude_desktop_config.json` on macOS):\n\n```json\n{\n  \"mcpServers\": {\n    \"nexus-agents\": {\n      \"command\": \"npx\",\n      \"args\": [\"nexus-agents\"],\n      \"env\": {\n        \"ANTHROPIC_API_KEY\": \"sk-ant-...\"\n      }\n    }\n  }\n}\n```\n\n---\n\n## Features\n\n### Multi-Agent Orchestration\n\nThe Orchestrator agent analyzes incoming tasks and delegates to specialized experts:\n\n| Expert                        | Specialization                                         |\n| ----------------------------- | ------------------------------------------------------ |\n| **Code Expert**               | Implementation, debugging, optimization, refactoring   |\n| **Architecture Expert**       | System design, patterns, trade-offs, scalability       |\n| **Security Expert**           | Vulnerability analysis, secure coding, threat modeling |\n| **Documentation Expert**      | Technical writing, API docs, code comments             |\n| **Testing Expert**            | Test strategies, coverage analysis, test generation    |\n| **DevOps Expert**             | CI/CD, deployment, containerization                    |\n| **Research Expert**           | Literature review, state-of-the-art analysis           |\n| **PM Expert**                 | Product management, requirements, priorities           |\n| **UX Expert**                 | User experience, usability, accessibility              |\n| **Infrastructure Expert**     | Server management, bare metal, networking              |\n| **QA Expert**                 | Quality gates, test-plan review, defect triage         |\n| **Data-Visualization Expert** | Charts, diagrams, dashboards, data presentation        |\n\nAll twelve expert types can collaborate on complex tasks. The Orchestrator combines their outputs into a single response.\n\n### Model Adapters\n\nUse different AI models through unified interfaces:\n\n| Provider     | CLI      | Best For                           |\n| ------------ | -------- | ---------------------------------- |\n| **Claude**   | claude   | Complex reasoning, analysis        |\n| **Gemini**   | gemini   | Long context, multimodal           |\n| **Codex**    | codex    | Code generation, reasoning         |\n| **OpenCode** | opencode | Custom OpenAI-compatible endpoints |\n\nModel selection uses composite routing: Budget → Zero-cost → Preference → TOPSIS → LinUCB bandit.\n\n### Workflow Engine\n\nDefine reusable workflows in YAML:\n\n```yaml\nname: code-review\ndescription: Comprehensive code review workflow\nsteps:\n  - agent: security_expert\n    action: scan_vulnerabilities\n    output: security_report\n\n  - agent: code_expert\n    action: review_quality\n    input: ${security_report}\n    output: quality_report\n\n  - agent: testing_expert\n    action: analyze_coverage\n    parallel: true\n\n  - agent: documentation_expert\n    action: check_documentation\n    parallel: true\n```\n\n### MCP Tools\n\nThe server exposes 47 MCP tools for integration. Key tools include:\n\n| Tool                 | Description                                    |\n| -------------------- | ---------------------------------------------- |\n| `orchestrate`        | Analyze task and coordinate expert execution   |\n| `create_expert`      | Create a specialized expert agent              |\n| `execute_expert`     | Execute a task using a created expert          |\n| `run_workflow`       | Execute a workflow template                    |\n| `delegate_to_model`  | Route task to optimal model                    |\n| `consensus_vote`     | Multi-model consensus voting on proposals      |\n| `research_discover`  | Discover papers/repos from external sources    |\n| `memory_query`       | Query across all memory backends               |\n| `issue_triage`       | Triage GitHub issues with trust classification |\n| `repo_analyze`       | Analyze GitHub repository structure            |\n| `repo_security_plan` | Generate security scanning pipeline for a repo |\n\nSee the [root README](https://github.com/nexus-substrate/nexus-agents/blob/main/README.md) for the complete tool list.\n\n---\n\n## Architecture\n\n```\nnexus-agents/\n├── packages/\n│   └── nexus-agents/         # Main package\n│       ├── src/\n│       │   ├── core/         # Shared types, Result<T,E>, errors, logger\n│       │   ├── config/       # Configuration, model registry, timeouts\n│       │   ├── adapters/     # Model adapters (Claude, OpenAI, Gemini, Ollama)\n│       │   ├── agents/       # Agent framework (Orchestrator, Experts)\n│       │   ├── workflows/    # Workflow engine and YAML templates\n│       │   ├── mcp/          # MCP server and tool definitions\n│       │   ├── cli-adapters/ # External CLI integration (Claude/Gemini/Codex/OpenCode)\n│       │   ├── context/      # Token counting, work balancing\n│       │   ├── consensus/    # Multi-agent voting with higher-order aggregation\n│       │   ├── memory/       # 8 memory backends (session, belief, adaptive, routing, graph, hybrid, agentic, typed)\n│       │   ├── security/     # Input sanitization, trust classification, policy gate\n│       │   ├── orchestration/# Graph workflows, AOrchestra, worker dispatch\n│       │   ├── pipeline/     # Task contracts, plugin registry, event bus\n│       │   ├── index.ts      # Main exports\n│       │   └── cli.ts        # CLI entry point\n│       └── package.json\n├── .claude/\n│   ├── rules/                # Claude Code rules\n│   └── skills/               # Project-specific skills\n└── pnpm-workspace.yaml\n```\n\nSee [docs/architecture/README.md](https://github.com/nexus-substrate/nexus-agents/blob/main/docs/architecture/README.md) for detailed module descriptions.\n\n### Dependency Flow\n\n```\nMCP Server (external boundary)\n    ↓\nOrchestration Layer (workflows, graph execution, worker dispatch)\n    ↓\nAgents Layer (Orchestrator, 12 Expert types)\n    ↓\nAdapters Layer (Claude, Gemini, Codex, OpenCode CLIs)\n    ↓\nCore Layer (Types, Result<T,E>, Errors, Logger)\n```\n\n### Core Interfaces\n\n```typescript\n// Unified model interaction\ninterface IModelAdapter {\n  complete(request: CompletionRequest): Promise<Result<Response, ModelError>>;\n  stream(request: CompletionRequest): AsyncIterable<StreamChunk>;\n  countTokens(text: string): Promise<number>;\n}\n\n// Base agent contract\ninterface IAgent {\n  readonly id: string;\n  readonly role: AgentRole;\n  execute(task: Task): Promise<Result<TaskResult, AgentError>>;\n  handleMessage(msg: AgentMessage): Promise<Result<AgentResponse, AgentError>>;\n}\n\n// Workflow execution\ninterface IWorkflowEngine {\n  loadTemplate(path: string): Promise<Result<WorkflowDefinition, ParseError>>;\n  execute(\n    workflow: WorkflowDefinition,\n    inputs: unknown\n  ): Promise<Result<WorkflowResult, WorkflowError>>;\n}\n```\n\n---\n\n## Configuration\n\n### Environment Variables\n\n| Variable            | Description                       | Required                              |\n| ------------------- | --------------------------------- | ------------------------------------- |\n| `ANTHROPIC_API_KEY` | Claude API key                    | Yes (for Claude)                      |\n| `OPENAI_API_KEY`    | OpenAI API key                    | For OpenAI models                     |\n| `GOOGLE_AI_API_KEY` | Google AI API key                 | For Gemini models                     |\n| `OLLAMA_HOST`       | Ollama server URL                 | For Ollama (default: localhost:11434) |\n| `NEXUS_LOG_LEVEL`   | Log level (debug/info/warn/error) | No                                    |\n\n---\n\n## API Reference\n\n### Adapters\n\n```typescript\nimport {\n  createClaudeAdapter,\n  createOpenAIAdapter,\n  createGeminiAdapter,\n  createOllamaAdapter,\n  AdapterFactory,\n} from 'nexus-agents';\n\n// Create individual adapters\nconst claude = createClaudeAdapter({ model: 'claude-sonnet-4-6' });\nconst openai = createOpenAIAdapter({ model: 'gpt-4o' });\nconst gemini = createGeminiAdapter({ model: 'gemini-3-pro' });\nconst ollama = createOllamaAdapter({ model: 'llama3:8b' });\n\n// Or use the factory\nconst factory = new AdapterFactory();\nconst adapter = factory.create({ provider: 'anthropic', model: 'claude-sonnet-4-6' });\n```\n\n### Agents\n\n```typescript\nimport { ExpertFactory } from 'nexus-agents';\n\n// Create experts for specific domains\nconst factory = new ExpertFactory(adapter);\nconst codeExpert = factory.create({ type: 'code' });\nconst securityExpert = factory.create({ type: 'security' });\nconst infraExpert = factory.create({ type: 'infrastructure' });\n```\n\n### MCP Server\n\n```typescript\nimport { createServer, startStdioServer, registerTools } from 'nexus-agents';\n\n// Create and start server\nconst result = await startStdioServer({\n  name: 'my-server',\n  version: '1.0.0',\n});\n\nif (result.ok) {\n  const { server } = result.value;\n  // Server is running with stdio transport\n}\n```\n\n---\n\n## Development\n\n### Prerequisites\n\n- Node.js 22.x LTS\n- pnpm 9.x\n- TypeScript 5.9+\n\n### Setup\n\n```bash\n# Clone the repository\ngit clone https://github.com/nexus-substrate/nexus-agents.git\ncd nexus-agents\n\n# Install dependencies\npnpm install\n\n# Build the package\npnpm build\n\n# Run tests\npnpm test\n\n# Start development mode\npnpm dev\n```\n\n### Commands\n\n```bash\n# Development\npnpm dev              # Start dev server with watch mode\npnpm build            # Build the package\npnpm clean            # Clean build artifacts\n\n# Quality\npnpm lint             # Run ESLint\npnpm lint:fix         # Fix linting issues\npnpm typecheck        # Run TypeScript type checking\npnpm test             # Run all tests\npnpm test:coverage    # Run tests with coverage\n```\n\n---\n\n## Contributing\n\nWe welcome contributions! Please see our guidelines:\n\n1. **Fork** the repository\n2. **Create** a feature branch (`git checkout -b feat/amazing-feature`)\n3. **Commit** with conventional commits (`git commit -m 'feat(agents): add amazing feature'`)\n4. **Push** to your branch (`git push origin feat/amazing-feature`)\n5. **Open** a Pull Request\n\n### Code Standards\n\n- Files must be under 400 lines\n- Functions must be under 50 lines\n- Coverage thresholds: 60% statements/functions/lines, 50% branches (`vitest.config.ts`)\n- All code must pass linting and type checking\n\nSee [CODING_STANDARDS.md](https://github.com/nexus-substrate/nexus-agents/blob/main/CODING_STANDARDS.md) for detailed guidelines.\nSee [CONTRIBUTING.md](https://github.com/nexus-substrate/nexus-agents/blob/main/CONTRIBUTING.md) for contribution workflow.\n\n### Commit Convention\n\nWe use [Conventional Commits](https://www.conventionalcommits.org/):\n\n```\nfeat(scope): add new feature\nfix(scope): fix bug\nrefactor(scope): refactor code\ndocs(scope): update documentation\ntest(scope): add tests\nchore(scope): maintenance tasks\n```\n\n---\n\n## License\n\nMIT - See [LICENSE](https://github.com/nexus-substrate/nexus-agents/blob/main/LICENSE) for details.\n\n---\n\n---\n\nBuilt with Claude Code\n","readmeFilename":"README.md"}