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playwright\nnpx playwright install chromium\n```\n\n## Tools (150+)\n\nCore = 52 Qwen-tuned tools; 130+ extended tools lazy-load via `tool_search` / `tool_load`.\n\nThe authoritative live tool list is available through the `nexus://tools` resource.\n\n### 🌐 Web (5 tools)\n`web_search`, `web_search_dashscope`, `web_fetch`, `web_scrape`, `url_extract`\n`web_search`, `web_fetch`, `web_scrape`, `url_extract`\n\n### 📁 Filesystem (6 tools)\n`fs_read`, `fs_write`, `fs_list`, `fs_search`, `fs_delete`, `fs_info`\n\n### 💻 Terminal (2 tools)\n`cmd_execute`, `cmd_spawn` (real streaming via spawn)\n\n### 🔀 Git (10 tools)\n`git_status`, `git_log`, `git_diff`, `git_branches`, `git_commit`, `git_clone`,\n`git_push`, `git_pull`, `git_checkout`, `git_add`\n\n### 🧠 Memory — Basic (5 tools)\n`mem_store`, `mem_recall`, `mem_list`, `mem_delete`, `mem_stats`\n\n### 🧠 Memory — Advanced (14 tools)\n**Episodic** (store complete experiences):\n`memory_episodic_store`, `memory_episodic_recall`, `memory_episodic_stats`\n\n**Semantic** (vector search):\n`memory_semantic_store`, `memory_semantic_search`, `memory_semantic_list`\n\n**Procedural** (reusable how-to knowledge):\n`memory_procedural_save`, `memory_procedural_find`, `memory_procedural_execute`, `memory_procedural_list`\n\n**Knowledge Graph** (entities and relationships):\n`memory_kg_add_entity`, `memory_kg_add_relation`, `memory_kg_query`, `memory_kg_stats`\n\n### 🧠 Reasoning (5 tools)\n`reason_tot` (Tree-of-Thought: explore multiple reasoning paths)\n`reason_react` (ReAct Loop: Think → Act → Observe)\n`reason_plan` (Plan-and-Execute: decompose and execute complex goals)\n`reason_reflect` (Reflection: analyze failures and generate corrections)\n`reason_reflect_single` (Quick correction for a single failure)\n\n### 🤖 Multi-Agent Orchestration (5 tools)\n`agent_route` (Route tasks to specialized agents)\n`agent_pipeline` (Sequential agent execution)\n`agent_parallel` (Concurrent agent execution)\n`agent_fanout` (Decompose + parallel execution)\n`agent_hierarchical` (Manager-worker delegation)\n\n### 🎭 Agents (8 tools)\n`agent_catalog`, `agent_search`, `agent_load`, `agent_domains`,\n`agent_create`, `agent_delegate`, `agent_list`, `agent_delete`\n\n### ⚙️ System (4 tools)\n`sys_info`, `sys_env`, `sys_health`, `sys_echo`\n\n### 🛠️ Dev Intelligence (21 tools)\n**Workflows:** `workflow_create`, `workflow_execute`, `workflow_step_done`, `workflow_status`, `workflow_list`\n**Tasks:** `task_start`, `task_checkpoint`, `task_restore`, `task_list`\n**Skills:** `skill_save`, `skill_search`, `skill_load`, `skill_list`, `skill_crystalize`\n**Chains:** `chain_create`, `chain_execute`, `chain_step_done`, `chain_status`, `chain_list`\n**Review:** `review_code`\n\n### 🚀 Autopilot (4 tools)\n`autopilot_start` (goal → persisted multi-step plan + auto-execution via bg_agent + checkpoints), `autopilot_resume`, `autopilot_status`, `autopilot_cancel`\n\n### 📦 Sandbox (4 tools)\n`sandbox_run` (isolated execution, `use_docker: auto|on|off` — Docker container when available, local fallback otherwise), `sandbox_node`, `sandbox_python`, `sandbox_status`\n\n### 📊 Intelligence (6 tools)\n`status`, `status_loop_check`, `status_summarize`, `status_history`, `context_save`, `context_restore`\n\n### 💾 Session (5 tools)\n`session_save`, `session_auto_save`, `session_resume`, `session_list`, `session_restore`\n\n### 🧠 Context (3 tools)\n`context_summarize`, `context_trim`, `context_status`\n\n### 👁️ Vision (1 tool)\n`vision_analyze` (Qwen-VL via DashScope, optional key)\n\n### 📐 Project (4 tools)\n`project_analyze`, `project_scan`, `project_pack`, `project_suggest`\n\n### 🐙 GitHub (4 tools)\n`github_issues`, `github_pr`, `github_search`, `github_content`\n*(Set `GITHUB_TOKEN` env var for private repos)*\n\n### 🔒 Security (3 tools)\n`scan_secrets`, `scan_injection`, `scan_deps`\n\n### 🔌 MCP Connect (6 tools)\n`mcp_connect` (stdio **or** HTTP(S)), `mcp_servers`, `mcp_tools`, `mcp_call`, `mcp_disconnect`, `mcp_proxy_status`\n*(stdio commands are allowlisted — see `NEXUS_ALLOWED_MCP_COMMANDS`)*\n\n### 📦 Catalog (3 tools)\n`catalog_fetch`, `catalog_search`, `catalog_status`\n\n### 🌐 Browser Automation (3 engines, 17 tools)\n\n**Playwright** (natif, headless, rapide) :\n`browser_pw_navigate`, `browser_pw_screenshot`, `browser_pw_extract`, `browser_pw_status`\n\n**Chrome DevTools MCP** (Google, debugging, performance) :\n`browser_devtools_navigate`, `browser_devtools_screenshot`, `browser_devtools_performance`, `browser_devtools_status`\n\n**browser-act** (anti-bot, stealth, multi-session) :\n`browser_act_status`, `browser_act_navigate`, `browser_act_extract`, `browser_act_screenshot`, `browser_act_list`, `browser_act_state`, `browser_act_click`, `browser_act_input`\n\n### 🤖 Automation (6 tools)\n`browse`, `browse_status`, `browse_screenshot`, `browse_click`, `schedule`, `schedule_list`\n\n## Resources (9)\n\n`nexus://info`, `nexus://filesystem/{path}`, `nexus://memory`, `nexus://project`,\n`nexus://system`, `nexus://workflows`, `nexus://skills`, `nexus://tasks`, `nexus://tools`\n\n## Prompts (7)\n\n`prompt_nexus_system`, `prompt_code_review`, `prompt_debug`, `prompt_audit`, `prompt_setup`,\n`prompt_skill_crystalize`, `prompt_plan`\n\n## Environment Variables\n\n| Variable | Description | Default |\n|----------|-------------|---------|\n| `NEXUS_DATA_DIR` | Where to store state files | `~/.nexus/` |\n| `WORKSPACE_DIR` | Default workspace path | `process.cwd()` |\n| `NEXUS_ALLOWED_DIRS` | Semicolon/comma-separated allowlist for filesystem access | workspace + home |\n| `NEXUS_ALLOW_OUTSIDE_WORKSPACE` | Set to `1` to allow filesystem access outside the workspace without an explicit allowlist entry | unset |\n| `NEXUS_ALLOW_SHELL` | Set to `1` to explicitly allow shell execution for `cmd_*`, `bg_*`, `agent_loop` | `0` |\n| `NEXUS_ALLOWED_ENV` | Comma-separated allowlist for extra environment variables readable via `sys_env` | safe defaults only |\n| `NEXUS_ALLOWED_MCP_COMMANDS` | Semicolon/comma-separated allowlist for extra MCP server commands (`mcp_connect` stdio) | common local commands |\n| `NEXUS_TOOL_TIMEOUT_MS` | Global anti-hang timeout per tool call (long-running tools get 20 min) | `120000` |\n| `NEXUS_LOG_FILE` | Optional log file path (redacted secrets, 5 MiB rotation) | none (stderr only) |\n| `NEXUS_STDOUT_GUARD` | Set to `0` to disable the stdout JSON-RPC purity guard | `1` (enabled) |\n| `NEXUS_CONTEXT_COMPACT` | Set to `1` to use reduced context defaults (project_pack ~12K tokens, tighter summarize/trim windows) | unset |\n| `NEXUS_CONTEXT_TRACK` | Set to `0` to disable context history tracking | `1` (enabled) |\n| `NEXUS_REASONING` | `native` (default, Qwen reasons itself — simulated `reason_*` tools stay lazy) or `simulated` (restore `reason_*` as core tools) | `native` |\n| `DASHSCOPE_API_KEY` | Optional DashScope key enabling `vision_analyze` (Qwen-VL) and `web_search_dashscope` (Qwen integrated search) | none |\n| `NEXUS_VISION_MODEL` | Vision model used by `vision_analyze` | `qwen-vl-max` |\n| `NEXUS_SEARCH_MODEL` | Model used by `web_search_dashscope` | `qwen3-max` |\n| `GITHUB_TOKEN` | GitHub API token for private repos (`github_*`, `cicd_*`) | none |\n| `GH_TOKEN` | Alias for `GITHUB_TOKEN` | none |\n| `DEFAULT_LLM_PROVIDER` | LLM provider (informational, for agent tooling) | `ollama` |\n| `DEFAULT_LLM_MODEL` | Default model (informational, for agent tooling) | `qwen2.5-coder:7b` |\n\n## Features\n\n- **Zero required API keys** — starts instantly for local/core workflows; optional tokens unlock private GitHub and external services\n- **Qwen3.8-Max ready** — cache-aware stable prefix, context sliding window, token-budgeted project packing, native reasoning passthrough, optional Qwen-VL vision & integrated web search\n- **Advanced reasoning** — Tree-of-Thought, ReAct loops, Plan-and-Execute, Reflection (legacy/lazy by default — Qwen reasons natively)\n- **Multi-agent orchestration** — Route, pipeline, parallel, fanout, and hierarchical agent coordination\n- **Autopilot missions** — persisted multi-step goals with checkpoints, resume after restart\n- **Isolated sandbox** — run code in Docker containers when available, local fallback otherwise\n- **MCP proxy** — connect to external MCP servers over stdio **or HTTP(S)** and call their tools\n- **Persistent memory** — Episodic, semantic (vector search), procedural, and knowledge graph\n- **Workflow engine** — DAG-based multi-step execution with checkpoints\n- **Skill crystallization** — learn from experience, reuse patterns\n- **Agent chains** — pipeline multiple AI agents in sequence\n- **Anti-loop detection** — detects and warns about repeated tool calls\n- **Security scanning** — find secrets, injection risks, and vulnerable deps\n- **MCP proxy** — connect to other MCP servers and use their tools\n- **Cross-platform** — works on Windows, macOS, and Linux\n- **Session save/restore** — persist entire state (memory, workflows, tasks) to disk\n- **Triple browser engine** — Playwright (fast), Chrome DevTools (debug/performance), browser-act (anti-bot/stealth)\n- **100% free browser automation** — no API keys required for any browser engine\n- **Rate monitoring** — sliding window rate tracker warns on excessive tool usage (120 RPM default)\n- **Circuit breaker** — automatically stops calling failing tools after 3 consecutive errors, resets after 30s\n- **Fully async I/O** — all memory operations are async, never block the event loop on long sessions\n\n## Security model\n\nNEXUS keeps agent autonomy while avoiding unsafe shell patterns by default:\n\n- `cmd_execute`, `cmd_spawn`, and `bg_start` parse command strings into executable + arguments instead of running a shell.\n- Shell mode is disabled unless `NEXUS_ALLOW_SHELL=1` is set explicitly.\n- Filesystem tools resolve paths against allowed roots (`WORKSPACE_DIR`, current directory, home, and `NEXUS_ALLOWED_DIRS`).\n- `sys_env` only exposes safe environment variables unless `NEXUS_ALLOWED_ENV` explicitly allows more.\n- Tool history redacts secrets before writing `.nexus/tool_history.json`.\n- `mcp_connect` only allows common local MCP commands unless `NEXUS_ALLOWED_MCP_COMMANDS` adds more.\n- Persistence uses atomic JSON writes for core state files.\n\n## Qwen3.8-Max cache-aware mode (v1.7.0)\n\nQwen3.8-Max bills input tokens per call, but a **byte-identical prefix** is\ncached across calls in the same session — hitting the cache drops input cost\nby up to **−90%**. NEXUS is designed to maximize that hit rate:\n\n- **Stable system prefix**: use `prompt_nexus_system` and pin its output\n  verbatim at the start of every conversation. It never contains timestamps,\n  paths, or other dynamic content, so the cache always matches.\n- **Context tools**: `context_summarize` / `context_trim` keep the window\n  tight during long agent loops — smaller working set, higher cache hit rate.\n- **Compact mode**: set `NEXUS_CONTEXT_COMPACT=1` to cut defaults — `project_pack`\n  targets ~12K tokens instead of 28K, summarize/trim keep fewer entries.\n- **Token-aware packing**: `project_pack` reports its own size (`chars/4` ≈\n  tokens) so you can size prompts deliberately instead of overflowing.\n\nCost rule of thumb: keep the prefix short but *identical*, and compress the\nmiddle — never the prefix. A 500-token stable prefix + cache ≈ 50 billed\ntokens per subsequent call.\n\n## Qwen3.8-Max adaptation (v1.7.0)\n\nNEXUS is tuned for Qwen3.8-Max's ~1M context and native capabilities:\n\n- **Cache-aware prompting** (see above): stable `prompt_nexus_system` prefix, context tools, compact mode.\n- **Context management**: `context_summarize` (compress older history into a summary block), `context_trim` (hard drop), `context_status` — persisted in `~/.nexus/context.json`. Run `context_summarize` every ~30 tool calls to keep the window tight.\n- **Project packing**: `project_pack` returns a token-budgeted tree + key files (default 28K tokens, 12K with `NEXUS_CONTEXT_COMPACT=1`).\n- **Native reasoning**: Qwen3.8-Max reasons natively, so the simulated `reason_plan` / `reason_react` / `reason_reflect` / `reason_tree_of_thought` loops are **legacy**: lazy-loadable but not core. Set `NEXUS_REASONING=simulated` to restore them for models without native reasoning.\n- **Multimodal**: `vision_analyze` sends a local image, URL, or `data:` URI to Qwen-VL (DashScope OpenAI-compatible API, `DASHSCOPE_API_KEY`). `browse_screenshot` already returns `data:image/jpeg;base64,...` — feed it straight into `vision_analyze`.\n- **Web search**: `web_search` (DuckDuckGo, no key) stays the default; `web_search_dashscope` uses Qwen's integrated search when `DASHSCOPE_API_KEY` is present.\n\n## Phase C expansion (v1.8.0)\n\n- **Autopilot missions**: `autopilot_start` turns a goal into a persisted multi-step plan executed through `bg_agent`, with checkpoints and crash-safe resume (`autopilot_resume` after restart). Interrupted missions auto-heal: steps are re-run idempotently, not lost.\n- **Real multi-agent tools**: `agent_pipeline`, `agent_parallel`, `agent_fanout` (N parallel workers via background tasks, `{index}` templating), and `agent_hierarchical` now execute real work (managed sessions, status/aggregate actions) instead of canned text. `reason_plan`, `reason_react`, `reason_reflect`, `reason_tot` are fully functional with bug fixes (nil `dependsOn`, reflection thresholds).\n- **Docker sandbox**: `sandbox_run` executes code in an isolated container (`docker run --rm --network none`, `node:22-alpine` / `python:3.12-alpine`) when Docker is available; `use_docker: auto|on|off` controls it, `sandbox_status` reports Docker presence.\n- **Skill crystallization**: `skill_crystalize` turns a solved task into a reusable structured skill (prompt template + tools + pattern, persisted in `skills.json`); 3 example skills are seeded on first run and shown in `catalog_status`.\n- **Wider MCP proxy**: `mcp_connect` now supports **HTTP(S)** transports (`transport=\"http\" url=\"http://host:port/mcp\"`) in addition to stdio; new `mcp_proxy_status` gives the full proxy health view (transports, endpoints, tool counts).\n\n## Phase D rebuild (v2.0.0)\r\n\r\n- **Core/extended split**: 36 plugins classified (`core` = validated modules: fs, shell, git, memory, bg, session, web, vision, autopilot, sandbox, MCP proxy... ; `extended` = the rest, documented, still lazy-loadable). Zero fake tools — every tool runs real code or returns an honest error.\r\n- **Single source of truth**: `src/core/tool-manifest.ts` snapshots the live SDK registry at startup (`tools/list` is the only truth). No hardcoded tool lists or counts anywhere — verified by tests.\r\n- **Comprehensive tests**: 142 unit + integration tests (memory CRUD, session lifecycle, bg tasks, autopilot, sandbox, MCP proxy HTTP, registry coherence...) and `npm test` now includes the full E2E MCP harness.\r\n- **CI/CD**: `.github/workflows/ci.yml` (typecheck → unit → build → E2E → Windows exe build+E2E) and `release.yml` (tag `v*` → npm publish + GitHub Release with `nexus-server.exe`).\r\n- **Docs**: complete env-var table, `docs/man.md` (usage exe/npx/HTTP, CLI flags, troubleshooting), `docs/qwen-tuning.md` (Qwen3.8-Max cache/context/cost tuning).\r\n\r\n## Windows shell fix (v2.0.1)\r\n\r\n- **Shell resolution**: `cmd_execute`/`cmd_spawn`/`bg_start` now resolve the best available Windows shell (`pwsh` first — supports `&&`/`||` — then `powershell.exe`, then `cmd.exe`) instead of hardcoding `powershell.exe`, which broke `&&` chains on PowerShell 5.1 and failed when `powershell.exe` was not on the client's PATH.\r\n- **Test stability**: vitest now runs files sequentially with a 60s timeout (integration tests spawn real OS processes); fixed a restart race in the autopilot test (wait for disk persistence before reload). Suite is 144/144, stable across repeated runs.\n\n## Reliability (v1.7.0)\n- **Mono-binary**: `npm run build:exe` produces `nexus-server.exe` (Bun-compiled) that runs with zero Node/npm/npx on the machine — immune to stale-global/npx-resolution failures. Run it directly from any MCP client.\n- **STDOUT Guardian**: only well-formed JSON-RPC lines may reach stdout; stray writes are blocked and logged to stderr, so the MCP channel can never be corrupted.\n- **Global tool timeout**: every tool call is guarded (`NEXUS_TOOL_TIMEOUT_MS`, default 120s; long-running tools get 20min). Runaway calls return a structured error instead of hanging the session.\n- **Input guard**: frames over 1 MiB are rejected with `-32000`; requests before `initialize` get `-32002` per spec.\n- **Write-Ahead Journal**: background tasks and tool history are journaled to `*.wal` + compacted into snapshots, so a crash between writes never loses state.\n- **Redaction + rotation**: logs redact API keys/tokens (incl. `DASHSCOPE_API_KEY`, `Bearer`); optional `NEXUS_LOG_FILE` with 5 MiB rotation.\n\n## Metrics & Monitoring\n\nNEXUS includes built-in middleware for long-running sessions:\n\n- **Rate Monitor**: sliding 60s window per tool, logs a warning at 120+ calls/minute. Does not block — observes and warns.\n- **Circuit Breaker**: after 3 consecutive failures on any tool, it returns a graceful error message instead of calling the tool again. Resets automatically after 30s of no failures.\n- **Tool History**: all tool calls are recorded into `tool_history.json` with timestamps, arguments (redacted), and success/failure status. Access via `status_history` tool.\n- **Global Timeout**: any tool exceeding `NEXUS_TOOL_TIMEOUT_MS` (default 120s, 20min for long-running tools) is aborted with a structured error instead of hanging the connection.\n\n## Architecture\n\n```\n┌─────────────────────────────────────────────────────────────┐\n│                    NEXUS MCP Server                          │\n├─────────────────────────────────────────────────────────────┤\n│  Middleware Layer                                            │\n│  ├─ Rate Monitor (120 RPM per tool)    ├─ Circuit Breaker   │\n│  └─ Call Logging + Metrics Collection                       │\n├─────────────────────────────────────────────────────────────┤\n│  Plugin Registry (auto-discover 27 tool modules)            │\n├─────────────────────────────────────────────────────────────┤\n│  Reasoning Layer                                            │\n│  ├─ Tree-of-Thought    ├─ ReAct Loop                        │\n│  ├─ Plan-and-Execute   └─ Reflection                        │\n├─────────────────────────────────────────────────────────────┤\n│  Multi-Agent Orchestration                                  │\n│  ├─ Router             ├─ Pipeline                          │\n│  ├─ Parallel           └─ Hierarchical                      │\n├─────────────────────────────────────────────────────────────┤\n│  Advanced Memory (fully async I/O)                          │\n│  ├─ Episodic             ├─ Semantic (Vector DB)            │\n│  ├─ Procedural           └─ Knowledge Graph                 │\n├─────────────────────────────────────────────────────────────┤\n│  Core Tools                                                 │\n│  ├─ Filesystem    ├─ Git       ├─ Terminal    ├─ Web        │\n│  ├─ GitHub        ├─ Security  ├─ Agents      └─ System     │\n├─────────────────────────────────────────────────────────────┤\n│  Dev Intelligence                                           │\n│  ├─ Workflows     ├─ Tasks     ├─ Skills      ├─ Chains     │\n│  └─ Session Save/Restore                                    │\n└─────────────────────────────────────────────────────────────┘\n```\n\n## License\n\nMIT\n\r\n","readmeFilename":"README.md"}