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dependencies](https://david-dm.org/wtsi-npg/npg_ranger.svg)](https://david-dm.org/wtsi-npg/npg_ranger)\n\n## Introduction\n\nThis project is a contribution towards development of the streaming API under the\n[GA4GH](http://ga4gh.org) initiative (GA4GH Directory API and Streaming). The project has\na server and a compatible command-line http client; both conform to [GA4GH API](https://github.com/samtools/hts-specs/blob/master/htsget.md)\n\n## Package structure\n\n```\n bin - node.js scripts, server and client\n lib - application libraries\n test - tests\n docker - scripts for deploying a server in docker containers in a cloud \n docs - technical manuals\n docs/api - generated API (run \"grunt doc\" to generate)\n package.json - npm package definition\n Gruntfile.js - grunt runner specification\n```\n\n# Related projects\n\n - OAuth2 authorization server https://github.com/wtsi-npg/npg_sentry\n - GA4GH-compatible genome browser (biodalliance) extension https://github.com/wtsi-npg/dalliance","readmeFilename":"README.md","gitHead":"2dd5d7190067319513678d759c54b570ae877e84","_id":"npg_ranger@3.0.0-beta","_nodeVersion":"10.16.3","_npmVersion":"6.9.0","dist":{"integrity":"sha512-VCZdvsYOQMaUGMIX2myaoEOyd9EEdMFEW4UAnKOfUQkKFSAypFEA0m0cLOm6U9Qd+wAwy1V6SAZ0frV8EBJcqA==","shasum":"45cc4d9789bb5fef8b2380ee7a80a4250bc07c0c","tarball":"https://registry.npmjs.org/npg_ranger/-/npg_ranger-3.0.0-beta.tgz","fileCount":67,"unpackedSize":641648,"npm-signature":"-----BEGIN PGP SIGNATURE-----\r\nVersion: OpenPGP.js v3.0.4\r\nComment: https://openpgpjs.org\r\n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\njETt\r\n=zbcy\r\n-----END PGP SIGNATURE-----\r\n","signatures":[{"keyid":"SHA256:jl3bwswu80PjjokCgh0o2w5c2U4LhQAE57gj9cz1kzA","sig":"MEYCIQCx2XSV30qJ9JOhDRvZc/IX/LV2UGuDiWh3nZ7xju1adQIhAMLDhUaQOKMk78EkAvAYdcOFk8FFXYy7qP+J6tycyT6Q"}]},"maintainers":[{"name":"david_j","email":"david.jackson+npmjs@sanger.ac.uk"},{"name":"jmtcsngr","email":"jmtc@sanger.ac.uk"},{"name":"mgcam","email":"mg8@sanger.ac.uk"}],"_npmUser":{"name":"jmtcsngr","email":"jmtc@sanger.ac.uk"},"directories":{},"_npmOperationalInternal":{"host":"s3://npm-registry-packages","tmp":"tmp/npg_ranger_3.0.0-beta_1569850511105_0.7224720560579796"},"_hasShrinkwrap":false},"3.0.0-beta.1":{"name":"npg_ranger","title":"npg_ranger","version":"3.0.0-beta.1","description":"Streaming service for bioinformatics data.","homepage":"https://github.com/wtsi-npg/npg_ranger","license":"SEE LICENSE IN LICENSE","private":false,"engines":{"node":">=10.16.2","npm":">=6.9.0"},"repository":{"type":"git","url":"git+https://github.com/wtsi-npg/npg_ranger.git"},"bugs":{"url":"https://github.com/wtsi-npg/npg_ranger/issues","email":"npg@sanger.ac.uk"},"contributors":[{"name":"Marina Gourtovaia"},{"name":"David Jackson"},{"name":"Andrew Nowak"},{"name":"Jaime Tovar Corona"},{"name":"Grisha Hushchyn"}],"keywords":["data streaming","NGS data","chromosome ranges"],"bin":{"npg_ranger_server":"bin/server.js","npg_ranger_client":"bin/client.js"},"main":"./lib/main.js","dependencies":{"@prantlf/jsonlint":"8.0.2","async":"3.1.0","commander":"2.20.0","config-chain":"1.1.12","fs-extra":"8.1.0","http-shutdown":"1.2.1","js-md5":"0.7.3","moment":"2.24.0","mongodb":"2.2.36","node-getopt":"0.3.2","request":"2.88.0","semver":"6.3.0","send":"0.17.1","winston":"2.4.4"},"devDependencies":{"browserify":"16.5.0","decache":"4.5.1","dev-null":"0.1.1","grunt":"1.0.4","grunt-browserify":"5.3.0","grunt-cli":"*","grunt-contrib-clean":"2.0.0","grunt-contrib-jshint":"*","grunt-contrib-watch":"*","grunt-jasmine-nodejs":"1.6.1","grunt-jscs":"3.0.1","grunt-jsdoc":"2.4.0","grunt-jsonlint":"2.0.0","load-grunt-tasks":"5.1.0","pem":"1.14.3","tmp":"0.1.0"},"readme":"# npg_ranger project\n\n[![Build Status](https://travis-ci.org/wtsi-npg/npg_ranger.svg?branch=master)](https://travis-ci.org/wtsi-npg/npg_ranger)\n[![NPM dependencies](https://david-dm.org/wtsi-npg/npg_ranger.svg)](https://david-dm.org/wtsi-npg/npg_ranger)\n\n## Introduction\n\nThis project is a contribution towards development of the streaming API under the\n[GA4GH](http://ga4gh.org) initiative (GA4GH Directory API and Streaming). The project has\na server and a compatible command-line http client; both conform to [GA4GH API](https://github.com/samtools/hts-specs/blob/master/htsget.md)\n\n## Package structure\n\n```\n bin - node.js scripts, server and client\n lib - application libraries\n test - tests\n docker - scripts for deploying a server in docker containers in a cloud \n docs - technical manuals\n docs/api - generated API (run \"grunt doc\" to generate)\n package.json - npm package definition\n Gruntfile.js - grunt runner specification\n```\n\n# Related projects\n\n - OAuth2 authorization server https://github.com/wtsi-npg/npg_sentry\n - GA4GH-compatible genome browser (biodalliance) extension https://github.com/wtsi-npg/dalliance","readmeFilename":"README.md","gitHead":"8c636da8acb7b4e30a1448bab18f849e17d6937c","_id":"npg_ranger@3.0.0-beta.1","_nodeVersion":"10.16.3","_npmVersion":"6.9.0","dist":{"integrity":"sha512-DVwOrus0Vjq+mWULNAdsG6M3HbUQW0TEpRYHiBo7mkC74w69VAEcAd/MrUrirTZC7HwiQ4MVFU67Q7i2MegIiw==","shasum":"de99316c1270c7da8a66eaf570c19f5828c0dbd4","tarball":"https://registry.npmjs.org/npg_ranger/-/npg_ranger-3.0.0-beta.1.tgz","fileCount":72,"unpackedSize":688531,"npm-signature":"-----BEGIN PGP SIGNATURE-----\r\nVersion: OpenPGP.js v3.0.4\r\nComment: https://openpgpjs.org\r\n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\ngxAN\r\n=w0Ji\r\n-----END PGP SIGNATURE-----\r\n","signatures":[{"keyid":"SHA256:jl3bwswu80PjjokCgh0o2w5c2U4LhQAE57gj9cz1kzA","sig":"MEQCICICqBq65fYjZlxbIblnfWfFSB2fObi8JIq1eX/QjWzRAiAwhtPCV02eKOHlnBTs3Wf6bMuP2y8qedxXKXkodrRzEw=="}]},"maintainers":[{"name":"david_j","email":"david.jackson+npmjs@sanger.ac.uk"},{"name":"jmtcsngr","email":"jmtc@sanger.ac.uk"},{"name":"mgcam","email":"mg8@sanger.ac.uk"}],"_npmUser":{"name":"jmtcsngr","email":"jmtc@sanger.ac.uk"},"directories":{},"_npmOperationalInternal":{"host":"s3://npm-registry-packages","tmp":"tmp/npg_ranger_3.0.0-beta.1_1580735003905_0.6769167506239924"},"_hasShrinkwrap":false},"3.0.0-beta.2":{"name":"npg_ranger","title":"npg_ranger","version":"3.0.0-beta.2","description":"Streaming service for bioinformatics data.","homepage":"https://github.com/wtsi-npg/npg_ranger","license":"SEE LICENSE IN LICENSE","private":false,"engines":{"node":">=10.16.2","npm":">=6.9.0"},"repository":{"type":"git","url":"git+https://github.com/wtsi-npg/npg_ranger.git"},"bugs":{"url":"https://github.com/wtsi-npg/npg_ranger/issues","email":"npg@sanger.ac.uk"},"contributors":[{"name":"Marina Gourtovaia"},{"name":"David Jackson"},{"name":"Andrew Nowak"},{"name":"Jaime Tovar Corona"},{"name":"Grisha Hushchyn"}],"keywords":["data streaming","NGS data","chromosome ranges"],"bin":{"npg_ranger_server":"bin/server.js","npg_ranger_client":"bin/client.js"},"main":"./lib/main.js","dependencies":{"@prantlf/jsonlint":"8.0.2","async":"3.1.0","commander":"2.20.0","config-chain":"1.1.12","fs-extra":"8.1.0","http-shutdown":"1.2.1","js-md5":"0.7.3","moment":"2.24.0","mongodb":"2.2.36","node-getopt":"0.3.2","request":"2.88.0","semver":"6.3.0","send":"0.17.1","winston":"2.4.4"},"devDependencies":{"browserify":"16.5.0","decache":"4.5.1","dev-null":"0.1.1","grunt":"1.0.4","grunt-browserify":"5.3.0","grunt-cli":"*","grunt-contrib-clean":"2.0.0","grunt-contrib-jshint":"*","grunt-contrib-watch":"*","grunt-jasmine-nodejs":"1.6.1","grunt-jscs":"3.0.1","grunt-jsdoc":"2.4.0","grunt-jsonlint":"2.0.0","load-grunt-tasks":"5.1.0","pem":"1.14.3","tmp":"0.1.0"},"readme":"# npg_ranger project\n\n[![Build Status](https://travis-ci.org/wtsi-npg/npg_ranger.svg?branch=master)](https://travis-ci.org/wtsi-npg/npg_ranger)\n[![NPM dependencies](https://david-dm.org/wtsi-npg/npg_ranger.svg)](https://david-dm.org/wtsi-npg/npg_ranger)\n\n## Introduction\n\nThis project is a contribution towards development of the streaming API under the\n[GA4GH](http://ga4gh.org) initiative (GA4GH Directory API and Streaming). The project has\na server and a compatible command-line http client; both conform to [GA4GH API](https://github.com/samtools/hts-specs/blob/master/htsget.md)\n\n## Package structure\n\n```\n bin - node.js scripts, server and client\n lib - application libraries\n test - tests\n docker - scripts for deploying a server in docker containers in a cloud \n docs - technical manuals\n docs/api - generated API (run \"grunt doc\" to generate)\n package.json - npm package definition\n Gruntfile.js - grunt runner specification\n```\n\n## File merging pipeline\n\nWe are using a light version of our samtools pipeline for merging by default, but the heavy version is available in the code, located inside `lib/server/model.js`.\nThis is because most of our data can work with the light pipeline, and the heavy version may be considerably more computationally taxing due to collating, fixmate, and sorting.\n\n# Related projects\n\n - OAuth2 authorization server https://github.com/wtsi-npg/npg_sentry\n - 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