About

PathwayMapper 2.0

i-Vis information Visualization Lab

Bilkent University, Ankara, Turkey

Memorial Sloan-Kettering Cancer Center

New York, USA

https://github.com/iVis-at-Bilkent/pathway-mapper

Quick Help

  • To add a node: Drag and drop from node palette
  • To add an interaction: Click on interaction type; then click on small circle on source node and release on target node
  • To add a node into a container (family, complex, compartment or process): Drag the node into its container node or select nodes to be contained and right click on container node and choose "Add Selected Into This"
  • To delete nodes/interactions: Select and perform Edit > Delete Selected
  • To overlay experiment data: Select Alteration % > Load From cBioPortal...

Interaction Legend

Node Legend

PathwayMapper
  • Network
    • New
    • Properties...
    • Import...
    • TCGA
    • Merge With...
    • Export
    • Export As
      • JPEG
      • PNG
      • SVG
      • SIFNX
  • Edit
    • Add Node
      • Gene
      • Family
      • Complex
      • Compartment
      • Process
    • Add Interaction
      • Activates
      • Inhibits
      • Induces
      • Represses
      • Binds
    • Delete Selected
    • Resize Nodes To Content
    • Undo
    • Redo
  • View
    • Align Selected
      • Vertical
        • Left
        • Center
        • Right
      • Horizontal
        • Top
        • Middle
        • Bottom
    • Grid...
    • Hide Selected Nodes
    • Show All Nodes
  • Highlight
    • Search Genes By Name...
    • Highlight Selected
    • Highlight Neighbors Of Selected
    • Identify Invalid Genes
    • Remove All Highlights
  • Alteration %
    • Load From File...
    • Load From cBioPortal...
    • Load Sample
    • View Settings...
    • Remove Data
  • Layout
    • Perform Layout
    • Layout Properties...
  • Help
    • Quick Help
    • How To Use
    • About
    Select Network
Network
Node Palette
Interaction Palette
Activates
Inhibits
Induces
Represses
Binds

Profile Data from cBioPortal